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PI0001260 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0001260
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr02:15273993..15274496
RNA-Seq ExpressionPI0001260
SyntenyPI0001260
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040193.1 gag/pol protein [Cucumis melo var. makuwa]6.1e-6173.05Show/hide
Query:  MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYDGWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQE
        MSSSIIAL K ++LT  NY TWKS LNMILVI DLR ILME+CPPFP +NASQ+V++AYD WTK N+K R+YIL SM ++LSKKHE MVTARQIMDS++E
Subjt:  MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYDGWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL
        MFGQPSIQI+ EAIKYVYN  +KE QSVREHVLDM+V FN+AE N  V DE+SQVS+IL+SL KSFL
Subjt:  MFGQPSIQIRHEAIKYVYNARIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL

KAA0063887.1 gag/pol protein [Cucumis melo var. makuwa]1.8e-6576.65Show/hide
Query:  MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYDGWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQE
        MSSSIIAL K ++LT +NYATWKS LNMILVI DLRF+LMEECPPFP +NASQ+V++AYD WTKAN+K  +Y+LAS+S++LSKKHE MVTARQIMDSL+E
Subjt:  MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYDGWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL
        MFGQPSIQI+ EAIKYVYNAR+KEGQSVREHVL M+V FNVAE N A+ DE+SQVS+IL+SL KSFL
Subjt:  MFGQPSIQIRHEAIKYVYNARIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL

TYK15919.1 gag/pol protein [Cucumis melo var. makuwa]1.8e-6576.65Show/hide
Query:  MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYDGWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQE
        MSSSIIAL K ++LT +NYATWKS LNMILVI DLRF+LMEECPPFP +NASQ+V++AYD WTKAN+K  +Y+LAS+S++LSKKHE MVTARQIMDSL+E
Subjt:  MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYDGWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL
        MFGQPSIQI+ EAIKYVYNAR+KEGQSVREHVL M+V FNVAE N A+ DE+SQVS+IL+SL KSFL
Subjt:  MFGQPSIQIRHEAIKYVYNARIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL

XP_022158197.1 uncharacterized protein LOC111024734 [Momordica charantia]1.8e-6070.66Show/hide
Query:  MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYDGWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQE
        MS+SIIAL   +KL  +NY  WKSNLN ILVIDDLRF+L E+CP  PV NA+  VRNAYD W K+N+K +VYILAS+S+VL+KKHE  VT ++IMDSLQ 
Subjt:  MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYDGWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL
        MFGQPS+Q RHEA+K+VYN+R+KEG SVREHVL++MV FNVAE+NG VIDEQSQ SFILESLPK+FL
Subjt:  MFGQPSIQIRHEAIKYVYNARIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL

XP_038882358.1 uncharacterized protein LOC120073622 [Benincasa hispida]4.4e-5968.26Show/hide
Query:  MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYDGWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQE
        M+SSII L  +EKL  DNY+ WKSNLN ILV+DDLRF+L EECP  P  NA++TVR AYD W KANEK R+YILASMS+VL+KKHES+ TA++I+DSL+E
Subjt:  MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYDGWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL
        +FGQPS  +RHEAIK++Y  R+KEG SVREHVLDMM+ FN+AE NG  IDE +Q SFIL+SLPKSF+
Subjt:  MFGQPSIQIRHEAIKYVYNARIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein4.7e-5967.66Show/hide
Query:  MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYDGWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQE
        M+S+ + +   +KL  +NYA+WK+ +N +L+IDDLRF+L+EECP  P  NA++TVR  Y+ W KANEK R YILAS+S VL+KKHESM+TAR+IMDSLQE
Subjt:  MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYDGWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL
        MFGQ S QI+H+A+KY+YNAR+ EG SVREHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFL
Subjt:  MFGQPSIQIRHEAIKYVYNARIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL

A0A5A7VA67 Gag/pol protein8.9e-6676.65Show/hide
Query:  MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYDGWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQE
        MSSSIIAL K ++LT +NYATWKS LNMILVI DLRF+LMEECPPFP +NASQ+V++AYD WTKAN+K  +Y+LAS+S++LSKKHE MVTARQIMDSL+E
Subjt:  MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYDGWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL
        MFGQPSIQI+ EAIKYVYNAR+KEGQSVREHVL M+V FNVAE N A+ DE+SQVS+IL+SL KSFL
Subjt:  MFGQPSIQIRHEAIKYVYNARIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL

A0A5D3D0D9 Gag/pol protein8.9e-6676.65Show/hide
Query:  MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYDGWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQE
        MSSSIIAL K ++LT +NYATWKS LNMILVI DLRF+LMEECPPFP +NASQ+V++AYD WTKAN+K  +Y+LAS+S++LSKKHE MVTARQIMDSL+E
Subjt:  MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYDGWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL
        MFGQPSIQI+ EAIKYVYNAR+KEGQSVREHVL M+V FNVAE N A+ DE+SQVS+IL+SL KSFL
Subjt:  MFGQPSIQIRHEAIKYVYNARIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL

A0A5D3DQJ2 Gag/pol protein3.0e-6173.05Show/hide
Query:  MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYDGWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQE
        MSSSIIAL K ++LT  NY TWKS LNMILVI DLR ILME+CPPFP +NASQ+V++AYD WTK N+K R+YIL SM ++LSKKHE MVTARQIMDS++E
Subjt:  MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYDGWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL
        MFGQPSIQI+ EAIKYVYN  +KE QSVREHVLDM+V FN+AE N  V DE+SQVS+IL+SL KSFL
Subjt:  MFGQPSIQIRHEAIKYVYNARIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL

A0A6J1DWL0 uncharacterized protein LOC1110247348.6e-6170.66Show/hide
Query:  MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYDGWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQE
        MS+SIIAL   +KL  +NY  WKSNLN ILVIDDLRF+L E+CP  PV NA+  VRNAYD W K+N+K +VYILAS+S+VL+KKHE  VT ++IMDSLQ 
Subjt:  MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYDGWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL
        MFGQPS+Q RHEA+K+VYN+R+KEG SVREHVL++MV FNVAE+NG VIDEQSQ SFILESLPK+FL
Subjt:  MFGQPSIQIRHEAIKYVYNARIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCCTCAATTATAGCACTGTTTAAAAATGAAAAATTAACCGCTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTT
CATCTTAATGGAGGAATGTCCTCCTTTCCCTGTTCGAAATGCATCCCAGACCGTCAGGAATGCATATGACGGCTGGACAAAGGCCAATGAAAAGACCCGAGTCTACATCT
TGGCCAGTATGTCCAACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGG
CACGAGGCTATTAAATACGTTTATAATGCCCGTATAAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGC
GGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCCTCAATTATAGCACTGTTTAAAAATGAAAAATTAACCGCTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTT
CATCTTAATGGAGGAATGTCCTCCTTTCCCTGTTCGAAATGCATCCCAGACCGTCAGGAATGCATATGACGGCTGGACAAAGGCCAATGAAAAGACCCGAGTCTACATCT
TGGCCAGTATGTCCAACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGG
CACGAGGCTATTAAATACGTTTATAATGCCCGTATAAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGC
GGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTCTAA
Protein sequenceShow/hide protein sequence
MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYDGWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQEMFGQPSIQIR
HEAIKYVYNARIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL