CuGenDBv2

Gene ID	PI0001290
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chr01:14552119..14554428
RNA-Seq Expression	PI0001290
Synteny	PI0001290
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0026071.1 uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa]

2.4e-42

62.42

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Query:  VRLTHLTFTDDLMIFCVVDASSIGFVQEALHQFGDLSGLVANLEKSSMFVAGVDREDATVLANNMGFALGTLPVRYLGLPLLSGRLRLR-----IARLSF
        V+LTHLTF DDLMIFC  D  SI F+++ L +FG+LSGL AN  KSS+FVAGV+ E+A+ LA  MGFA G LPVRYLGLPLL+GRLR       I R++ 
Subjt:  VRLTHLTFTDDLMIFCVVDASSIGFVQEALHQFGDLSGLVANLEKSSMFVAGVDREDATVLANNMGFALGTLPVRYLGLPLLSGRLRLR-----IARLSF

Query:  SVLLVRFGLGLSFAGRLQLVRSVLQSFQVYWTSVFVLSVGVHHEVDRILMSYLW-GKKEGRGGMQ
         +      + LSFAGRLQLVRSVL+S QVYW SVFVL   VH+EVD+IL SYLW GK+EGRGG++
Subjt:  SVLLVRFGLGLSFAGRLQLVRSVLQSFQVYWTSVFVLSVGVHHEVDRILMSYLW-GKKEGRGGMQ

KAA0059752.1 F17F8.5 [Cucumis melo var. makuwa]

1.2e-41

61.82

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Query:  VRLTHLTFTDDLMIFCVVDASSIGFVQEALHQFGDLSGLVANLEKSSMFVAGVDREDATVLANNMGFALGTLPVRYLGLPLLSGRLRLR-----IARLSF
        V+LT+LTF DDLMIFC  D  SI F++E L +FG+LSGL AN  KSS+FVAGV+ E+A+ LA  MGF  G LP+RYLGLPLL+GRLR       I R++ 
Subjt:  VRLTHLTFTDDLMIFCVVDASSIGFVQEALHQFGDLSGLVANLEKSSMFVAGVDREDATVLANNMGFALGTLPVRYLGLPLLSGRLRLR-----IARLSF

Query:  SVLLVRFGLGLSFAGRLQLVRSVLQSFQVYWTSVFVLSVGVHHEVDRILMSYLW-GKKEGRGGMQ
        S +       LSFAGRLQLVR VL+S QVYW SVFVL   VHHEVD+IL+SYLW GK+EGRGG++
Subjt:  SVLLVRFGLGLSFAGRLQLVRSVLQSFQVYWTSVFVLSVGVHHEVDRILMSYLW-GKKEGRGGMQ

KAA0062318.1 uncharacterized protein E6C27_scaffold154G00690 [Cucumis melo var. makuwa]

6.0e-41

61.82

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Query:  VRLTHLTFTDDLMIFCVVDASSIGFVQEALHQFGDLSGLVANLEKSSMFVAGVDREDATVLANNMGFALGTLPVRYLGLPLLSGRLRLR-----IARLSF
        V+LTHLTF DDLMIFC  +  SI F++E L +FG+LSGL AN  KSS+FVAGV+ E+A+ LA  MGF  G L VRYLGLPLL+GRLR       I R++ 
Subjt:  VRLTHLTFTDDLMIFCVVDASSIGFVQEALHQFGDLSGLVANLEKSSMFVAGVDREDATVLANNMGFALGTLPVRYLGLPLLSGRLRLR-----IARLSF

Query:  SVLLVRFGLGLSFAGRLQLVRSVLQSFQVYWTSVFVLSVGVHHEVDRILMSYLW-GKKEGRGGMQ
        S +       LSFAGRLQLV SVL+SFQVYW SVFVL   VH+EVD+IL SYLW GK+EGRGG++
Subjt:  SVLLVRFGLGLSFAGRLQLVRSVLQSFQVYWTSVFVLSVGVHHEVDRILMSYLW-GKKEGRGGMQ

KAA0062333.1 putative reverse transcriptase [Cucumis melo var. makuwa]

6.0e-41

60.61

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Query:  VRLTHLTFTDDLMIFCVVDASSIGFVQEALHQFGDLSGLVANLEKSSMFVAGVDREDATVLANNMGFALGTLPVRYLGLPLLSGRLRLR-----IARLSF
        V+L HLTF DDLMIFC  D SS+ F++E L +FG+LSGL  NL K+SMFVAGV+ E A+ LA +MGF LG LPVRYLGLPLLSGRLR       I R++ 
Subjt:  VRLTHLTFTDDLMIFCVVDASSIGFVQEALHQFGDLSGLVANLEKSSMFVAGVDREDATVLANNMGFALGTLPVRYLGLPLLSGRLRLR-----IARLSF

Query:  SVLLVRFGLGLSFAGRLQLVRSVLQSFQVYWTSVFVLSVGVHHEVDRILMSYLW-GKKEGRGGMQ
        S +   F    SFAGRLQL+R VL+S QV+W SVFVL   VH++VD+IL SYLW  K+EGRGG++
Subjt:  SVLLVRFGLGLSFAGRLQLVRSVLQSFQVYWTSVFVLSVGVHHEVDRILMSYLW-GKKEGRGGMQ

TYK28099.1 uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]

2.4e-42

62.42

Show/hide

Query:  VRLTHLTFTDDLMIFCVVDASSIGFVQEALHQFGDLSGLVANLEKSSMFVAGVDREDATVLANNMGFALGTLPVRYLGLPLLSGRLRLR-----IARLSF
        V+LTHLTF DDLMIFC  D  SI F+++ L +FG+LSGL AN  KSS+FVAGV+ E+A+ LA  MGFA G LPVRYLGLPLL+GRLR       I R++ 
Subjt:  VRLTHLTFTDDLMIFCVVDASSIGFVQEALHQFGDLSGLVANLEKSSMFVAGVDREDATVLANNMGFALGTLPVRYLGLPLLSGRLRLR-----IARLSF

Query:  SVLLVRFGLGLSFAGRLQLVRSVLQSFQVYWTSVFVLSVGVHHEVDRILMSYLW-GKKEGRGGMQ
         +      + LSFAGRLQLVRSVL+S QVYW SVFVL   VH+EVD+IL SYLW GK+EGRGG++
Subjt:  SVLLVRFGLGLSFAGRLQLVRSVLQSFQVYWTSVFVLSVGVHHEVDRILMSYLW-GKKEGRGGMQ

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SPE5 Reverse transcriptase domain-containing protein

1.2e-42

62.42

Show/hide

Query:  VRLTHLTFTDDLMIFCVVDASSIGFVQEALHQFGDLSGLVANLEKSSMFVAGVDREDATVLANNMGFALGTLPVRYLGLPLLSGRLRLR-----IARLSF
        V+LTHLTF DDLMIFC  D  SI F+++ L +FG+LSGL AN  KSS+FVAGV+ E+A+ LA  MGFA G LPVRYLGLPLL+GRLR       I R++ 
Subjt:  VRLTHLTFTDDLMIFCVVDASSIGFVQEALHQFGDLSGLVANLEKSSMFVAGVDREDATVLANNMGFALGTLPVRYLGLPLLSGRLRLR-----IARLSF

Query:  SVLLVRFGLGLSFAGRLQLVRSVLQSFQVYWTSVFVLSVGVHHEVDRILMSYLW-GKKEGRGGMQ
         +      + LSFAGRLQLVRSVL+S QVYW SVFVL   VH+EVD+IL SYLW GK+EGRGG++
Subjt:  SVLLVRFGLGLSFAGRLQLVRSVLQSFQVYWTSVFVLSVGVHHEVDRILMSYLW-GKKEGRGGMQ

A0A5A7UV01 F17F8.5

5.8e-42

61.82

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Query:  VRLTHLTFTDDLMIFCVVDASSIGFVQEALHQFGDLSGLVANLEKSSMFVAGVDREDATVLANNMGFALGTLPVRYLGLPLLSGRLRLR-----IARLSF
        V+LT+LTF DDLMIFC  D  SI F++E L +FG+LSGL AN  KSS+FVAGV+ E+A+ LA  MGF  G LP+RYLGLPLL+GRLR       I R++ 
Subjt:  VRLTHLTFTDDLMIFCVVDASSIGFVQEALHQFGDLSGLVANLEKSSMFVAGVDREDATVLANNMGFALGTLPVRYLGLPLLSGRLRLR-----IARLSF

Query:  SVLLVRFGLGLSFAGRLQLVRSVLQSFQVYWTSVFVLSVGVHHEVDRILMSYLW-GKKEGRGGMQ
        S +       LSFAGRLQLVR VL+S QVYW SVFVL   VHHEVD+IL+SYLW GK+EGRGG++
Subjt:  SVLLVRFGLGLSFAGRLQLVRSVLQSFQVYWTSVFVLSVGVHHEVDRILMSYLW-GKKEGRGGMQ

A0A5A7V2L9 Putative reverse transcriptase

2.9e-41

60.61

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Query:  VRLTHLTFTDDLMIFCVVDASSIGFVQEALHQFGDLSGLVANLEKSSMFVAGVDREDATVLANNMGFALGTLPVRYLGLPLLSGRLRLR-----IARLSF
        V+L HLTF DDLMIFC  D SS+ F++E L +FG+LSGL  NL K+SMFVAGV+ E A+ LA +MGF LG LPVRYLGLPLLSGRLR       I R++ 
Subjt:  VRLTHLTFTDDLMIFCVVDASSIGFVQEALHQFGDLSGLVANLEKSSMFVAGVDREDATVLANNMGFALGTLPVRYLGLPLLSGRLRLR-----IARLSF

Query:  SVLLVRFGLGLSFAGRLQLVRSVLQSFQVYWTSVFVLSVGVHHEVDRILMSYLW-GKKEGRGGMQ
        S +   F    SFAGRLQL+R VL+S QV+W SVFVL   VH++VD+IL SYLW  K+EGRGG++
Subjt:  SVLLVRFGLGLSFAGRLQLVRSVLQSFQVYWTSVFVLSVGVHHEVDRILMSYLW-GKKEGRGGMQ

A0A5A7V3Z0 Reverse transcriptase domain-containing protein

2.9e-41

61.82

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Query:  VRLTHLTFTDDLMIFCVVDASSIGFVQEALHQFGDLSGLVANLEKSSMFVAGVDREDATVLANNMGFALGTLPVRYLGLPLLSGRLRLR-----IARLSF
        V+LTHLTF DDLMIFC  +  SI F++E L +FG+LSGL AN  KSS+FVAGV+ E+A+ LA  MGF  G L VRYLGLPLL+GRLR       I R++ 
Subjt:  VRLTHLTFTDDLMIFCVVDASSIGFVQEALHQFGDLSGLVANLEKSSMFVAGVDREDATVLANNMGFALGTLPVRYLGLPLLSGRLRLR-----IARLSF

Query:  SVLLVRFGLGLSFAGRLQLVRSVLQSFQVYWTSVFVLSVGVHHEVDRILMSYLW-GKKEGRGGMQ
        S +       LSFAGRLQLV SVL+SFQVYW SVFVL   VH+EVD+IL SYLW GK+EGRGG++
Subjt:  SVLLVRFGLGLSFAGRLQLVRSVLQSFQVYWTSVFVLSVGVHHEVDRILMSYLW-GKKEGRGGMQ

A0A5D3DXE4 Reverse transcriptase domain-containing protein

1.2e-42

62.42

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Query:  VRLTHLTFTDDLMIFCVVDASSIGFVQEALHQFGDLSGLVANLEKSSMFVAGVDREDATVLANNMGFALGTLPVRYLGLPLLSGRLRLR-----IARLSF
        V+LTHLTF DDLMIFC  D  SI F+++ L +FG+LSGL AN  KSS+FVAGV+ E+A+ LA  MGFA G LPVRYLGLPLL+GRLR       I R++ 
Subjt:  VRLTHLTFTDDLMIFCVVDASSIGFVQEALHQFGDLSGLVANLEKSSMFVAGVDREDATVLANNMGFALGTLPVRYLGLPLLSGRLRLR-----IARLSF

Query:  SVLLVRFGLGLSFAGRLQLVRSVLQSFQVYWTSVFVLSVGVHHEVDRILMSYLW-GKKEGRGGMQ
         +      + LSFAGRLQLVRSVL+S QVYW SVFVL   VH+EVD+IL SYLW GK+EGRGG++
Subjt:  SVLLVRFGLGLSFAGRLQLVRSVLQSFQVYWTSVFVLSVGVHHEVDRILMSYLW-GKKEGRGGMQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

6.2e-12

40.74

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Query:  VAGVDREDATVLANNMGFALGTLPVRYLGLPLLSGRLRLRIARLSFSVLLVRFG----LGLSFAGRLQLVRSVLQSFQVYWTSVFVLSVGVHHEVDRILM
        +AGV   D   + ++  FA G LPVRYLGLPLL+ ++           + VR G      LSFAGRLQL+ SV+ S   +W S F L      E+D I  
Subjt:  VAGVDREDATVLANNMGFALGTLPVRYLGLPLLSGRLRLRIARLSFSVLLVRFG----LGLSFAGRLQLVRSVLQSFQVYWTSVFVLSVGVHHEVDRILM

Query:  SYLWGKKE
        S+LW   E
Subjt:  SYLWGKKE

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAGAATGGAACTTCATTATTCTACCTGAAAGGCCACAATAACTTGTATTTCTACAAGTTATCAGCCCAACATGAGGTTGAGCGAGATCTTGGTCCTGTTGAGGTTGT
CGTCAAGCTGGGCTTGCTACTGAGGCTTTCTGTTTGTTCTCGTATTAGTCATAATAATTTACTCTATGTTGTGGACTCTGATGGTATTCGTGTGACCTCCCATGATGGGC
TGGTTCGTTTGACCCATCTGACCTTCACTGATGATCTTATGATTTTTTGTGTTGTTGATGCCTCATCCATTGGGTTTGTGCAAGAGGCTCTCCATCAGTTTGGGGATTTA
TCGGGGCTGGTTGCTAATCTGGAGAAGAGCTCTATGTTTGTTGCAGGGGTTGACCGTGAGGATGCTACTGTGTTGGCGAATAATATGGGGTTTGCTCTGGGTACTCTTCC
TGTTCGTTACCTGGGTCTTCCCTTACTCTCTGGTAGGTTGCGTCTACGGATTGCACGCCTCTCATTTAGCGTATTACTAGTCAGATTCGGTCTTGGTCTGTCCTTTGCTG
GGAGACTTCAACTGGTGCGTTCTGTGTTGCAGAGTTTTCAGGTTTATTGGACTAGTGTGTTTGTTTTGTCGGTGGGTGTGCATCATGAGGTTGATAGGATTTTGATGTCG
TATCTTTGGGGTAAGAAGGAAGGTAGAGGGGGGATGCAAAGGTCGCTTGGGTGGAGCTGTGTCGCCTAA

mRNA sequence

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Protein sequence

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MENGTSLFYLKGHNNLYFYKLSAQHEVERDLGPVEVVVKLGLLLRLSVCSRISHNNLLYVVDSDGIRVTSHDGLVRLTHLTFTDDLMIFCVVDASSIGFVQEALHQFGDL
SGLVANLEKSSMFVAGVDREDATVLANNMGFALGTLPVRYLGLPLLSGRLRLRIARLSFSVLLVRFGLGLSFAGRLQLVRSVLQSFQVYWTSVFVLSVGVHHEVDRILMS
YLWGKKEGRGGMQRSLGWSCVA

PI0001290 (gene) of Melon (PI 482460) v1 genome