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PI0001325 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0001325
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr04:17233531..17235226
RNA-Seq ExpressionPI0001325
SyntenyPI0001325
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037189.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.6e-8279.4Show/hide
Query:  GDITKPIKPTPPRKNISQDTIENVDANLSDVTIHETTAEDVKYIEKLKDWDSKNHQIITWLGNTSILAIHTQFDAFDTAKELWDFLFIHFQSIGLAHYYQ
        GDITKPIKPT P KNI         AN SDV IHETTAED+KYIE+L+DWDSKNHQIITWLGNTSI AIHTQ D+FDTAKELWDFL   FQSIGLAHYYQ
Subjt:  GDITKPIKPTPPRKNISQDTIENVDANLSDVTIHETTAEDVKYIEKLKDWDSKNHQIITWLGNTSILAIHTQFDAFDTAKELWDFLFIHFQSIGLAHYYQ

Query:  LHSRLVSLNQEVGQSVNEYFATFQPIWTQLDHAKISSDHIRLIKVLMGLRPEYKSVCAALLHCNPLPSLDAVIQEILFEEKRLGNVFSLPSDVALATTH
        L+S L++LNQEVGQSVNEY AT QPIWTQLD  KI+ DHIRLIKVLMGLRPEY+SV AALLH NPLPSLDA +QEILFEEKRLG V +LPSDVALATT+
Subjt:  LHSRLVSLNQEVGQSVNEYFATFQPIWTQLDHAKISSDHIRLIKVLMGLRPEYKSVCAALLHCNPLPSLDAVIQEILFEEKRLGNVFSLPSDVALATTH

KAA0047794.1 putative mitochondrial protein [Cucumis melo var. makuwa]7.0e-8679.6Show/hide
Query:  VTGDITKPIKPTPPRKNISQDTIENVDANLSDVTIHETTAEDVKYIEKLKDWDSKNHQIITWLGNTSILAIHTQFDAFDTAKELWDFLFIHFQSIGLAHY
        VTGDITKP+KPT P KN S++  E+ DAN SD+ +HE T ED++YIE+L+DWDSKNHQIITWLGNTSI AIHTQFD FD+AKELW+FL+  FQSIGLAHY
Subjt:  VTGDITKPIKPTPPRKNISQDTIENVDANLSDVTIHETTAEDVKYIEKLKDWDSKNHQIITWLGNTSILAIHTQFDAFDTAKELWDFLFIHFQSIGLAHY

Query:  YQLHSRLVSLNQEVGQSVNEYFATFQPIWTQLDHAKISSDHIRLIKVLMGLRPEYKSVCAALLHCNPLPSLDAVIQEILFEEKRLGNVFSLPSDVALATT
        YQLHS LV+LNQEVGQSVNEY  TFQPIWTQLD AKIS DHIRLIKVLMGLR EY+SV AALLH NPLPSLDA +QEILFEEKRLG V SLPSDVALATT
Subjt:  YQLHSRLVSLNQEVGQSVNEYFATFQPIWTQLDHAKISSDHIRLIKVLMGLRPEYKSVCAALLHCNPLPSLDAVIQEILFEEKRLGNVFSLPSDVALATT

Query:  H
        H
Subjt:  H

KAA0053979.1 Integrase, catalytic core [Cucumis melo var. makuwa]2.9e-7976Show/hide
Query:  VTGDITKPIKPTPPRKNISQDTIENVDANLSDVTIHETTAEDVKYIEKLKDWDSKNHQIITWLGNTSILAIHTQFDAFDTAKELWDFLFIHFQSIGLAHY
        VTGDITKP+KP PP ++  Q++IE+     +D+  H+TTAED+KYIE+L+DWD KNHQIITWLGNTSI  IHTQFDAFDTAKELWDFL+  FQSIGLAHY
Subjt:  VTGDITKPIKPTPPRKNISQDTIENVDANLSDVTIHETTAEDVKYIEKLKDWDSKNHQIITWLGNTSILAIHTQFDAFDTAKELWDFLFIHFQSIGLAHY

Query:  YQLHSRLVSLNQEVGQSVNEYFATFQPIWTQLDHAKISSDHIRLIKVLMGLRPEYKSVCAALLHCNPLPSLDAVIQEILFEEKRLGNVFSLPSDVALATT
        YQLHS LVSLNQEVGQSVNEY AT QPIWTQL+ AKIS DHI LIKVLMGLRPEY+SV AALLH NPLPSLD  IQ+ILFEEKRL    SLPSDVAL T+
Subjt:  YQLHSRLVSLNQEVGQSVNEYFATFQPIWTQLDHAKISSDHIRLIKVLMGLRPEYKSVCAALLHCNPLPSLDAVIQEILFEEKRLGNVFSLPSDVALATT

XP_016901896.1 PREDICTED: uncharacterized protein LOC107991463 [Cucumis melo]3.3e-8379.6Show/hide
Query:  VTGDITKPIKPTPPRKNISQDTIENVDANLSDVTIHETTAEDVKYIEKLKDWDSKNHQIITWLGNTSILAIHTQFDAFDTAKELWDFLFIHFQSIGLAHY
        VTGDITKPIKPT P KNI         AN SDV IHETTAED+KYIE+L+DWDSKNHQIITWLGNTSI AIHTQ D+FDTAKELWDFL   FQSIGLAHY
Subjt:  VTGDITKPIKPTPPRKNISQDTIENVDANLSDVTIHETTAEDVKYIEKLKDWDSKNHQIITWLGNTSILAIHTQFDAFDTAKELWDFLFIHFQSIGLAHY

Query:  YQLHSRLVSLNQEVGQSVNEYFATFQPIWTQLDHAKISSDHIRLIKVLMGLRPEYKSVCAALLHCNPLPSLDAVIQEILFEEKRLGNVFSLPSDVALATT
        YQL+S L++LNQEVGQSVNEY AT QPIWTQLD  KI+ DHIRLIKVLMGLRPEY+SV AALLH NPLPSLDA +QEILFEEKRLG V +LPSDVALATT
Subjt:  YQLHSRLVSLNQEVGQSVNEYFATFQPIWTQLDHAKISSDHIRLIKVLMGLRPEYKSVCAALLHCNPLPSLDAVIQEILFEEKRLGNVFSLPSDVALATT

Query:  H
        +
Subjt:  H

XP_031739694.1 uncharacterized protein LOC105434738 [Cucumis sativus]2.3e-8481.59Show/hide
Query:  VTGDITKPIKPTPPRKNISQDTIENVDANLSDVTIHETTAEDVKYIEKLKDWDSKNHQIITWLGNTSILAIHTQFDAFDTAKELWDFLFIHFQSIGLAHY
        VTGDITKP+KPTP       DT EN+D + SDVT+ ETTAE  KYIE+L+DWDSKNHQIITWLGNTSI AIHTQFDAFDTAKELWDFL   FQSIGLAHY
Subjt:  VTGDITKPIKPTPPRKNISQDTIENVDANLSDVTIHETTAEDVKYIEKLKDWDSKNHQIITWLGNTSILAIHTQFDAFDTAKELWDFLFIHFQSIGLAHY

Query:  YQLHSRLVSLNQEVGQSVNEYFATFQPIWTQLDHAKISSDHIRLIKVLMGLRPEYKSVCAALLHCNPLPSLDAVIQEILFEEKRLGNVFSLPSDVALATT
        YQLHSRLVSLNQE GQSVNEY AT QPIWTQLD AKI+ +HIRLIKVLMGLRPEY+SV AALLH NPLPSLDA IQEILFEE RLG V SLPSDVALATT
Subjt:  YQLHSRLVSLNQEVGQSVNEYFATFQPIWTQLDHAKISSDHIRLIKVLMGLRPEYKSVCAALLHCNPLPSLDAVIQEILFEEKRLGNVFSLPSDVALATT

Query:  H
        H
Subjt:  H

TrEMBL top hitse value%identityAlignment
A0A1S4E0Y9 uncharacterized protein LOC1079914631.6e-8379.6Show/hide
Query:  VTGDITKPIKPTPPRKNISQDTIENVDANLSDVTIHETTAEDVKYIEKLKDWDSKNHQIITWLGNTSILAIHTQFDAFDTAKELWDFLFIHFQSIGLAHY
        VTGDITKPIKPT P KNI         AN SDV IHETTAED+KYIE+L+DWDSKNHQIITWLGNTSI AIHTQ D+FDTAKELWDFL   FQSIGLAHY
Subjt:  VTGDITKPIKPTPPRKNISQDTIENVDANLSDVTIHETTAEDVKYIEKLKDWDSKNHQIITWLGNTSILAIHTQFDAFDTAKELWDFLFIHFQSIGLAHY

Query:  YQLHSRLVSLNQEVGQSVNEYFATFQPIWTQLDHAKISSDHIRLIKVLMGLRPEYKSVCAALLHCNPLPSLDAVIQEILFEEKRLGNVFSLPSDVALATT
        YQL+S L++LNQEVGQSVNEY AT QPIWTQLD  KI+ DHIRLIKVLMGLRPEY+SV AALLH NPLPSLDA +QEILFEEKRLG V +LPSDVALATT
Subjt:  YQLHSRLVSLNQEVGQSVNEYFATFQPIWTQLDHAKISSDHIRLIKVLMGLRPEYKSVCAALLHCNPLPSLDAVIQEILFEEKRLGNVFSLPSDVALATT

Query:  H
        +
Subjt:  H

A0A5A7TXR0 Putative mitochondrial protein3.4e-8679.6Show/hide
Query:  VTGDITKPIKPTPPRKNISQDTIENVDANLSDVTIHETTAEDVKYIEKLKDWDSKNHQIITWLGNTSILAIHTQFDAFDTAKELWDFLFIHFQSIGLAHY
        VTGDITKP+KPT P KN S++  E+ DAN SD+ +HE T ED++YIE+L+DWDSKNHQIITWLGNTSI AIHTQFD FD+AKELW+FL+  FQSIGLAHY
Subjt:  VTGDITKPIKPTPPRKNISQDTIENVDANLSDVTIHETTAEDVKYIEKLKDWDSKNHQIITWLGNTSILAIHTQFDAFDTAKELWDFLFIHFQSIGLAHY

Query:  YQLHSRLVSLNQEVGQSVNEYFATFQPIWTQLDHAKISSDHIRLIKVLMGLRPEYKSVCAALLHCNPLPSLDAVIQEILFEEKRLGNVFSLPSDVALATT
        YQLHS LV+LNQEVGQSVNEY  TFQPIWTQLD AKIS DHIRLIKVLMGLR EY+SV AALLH NPLPSLDA +QEILFEEKRLG V SLPSDVALATT
Subjt:  YQLHSRLVSLNQEVGQSVNEYFATFQPIWTQLDHAKISSDHIRLIKVLMGLRPEYKSVCAALLHCNPLPSLDAVIQEILFEEKRLGNVFSLPSDVALATT

Query:  H
        H
Subjt:  H

A0A5A7UKE6 Integrase, catalytic core1.4e-7976Show/hide
Query:  VTGDITKPIKPTPPRKNISQDTIENVDANLSDVTIHETTAEDVKYIEKLKDWDSKNHQIITWLGNTSILAIHTQFDAFDTAKELWDFLFIHFQSIGLAHY
        VTGDITKP+KP PP ++  Q++IE+     +D+  H+TTAED+KYIE+L+DWD KNHQIITWLGNTSI  IHTQFDAFDTAKELWDFL+  FQSIGLAHY
Subjt:  VTGDITKPIKPTPPRKNISQDTIENVDANLSDVTIHETTAEDVKYIEKLKDWDSKNHQIITWLGNTSILAIHTQFDAFDTAKELWDFLFIHFQSIGLAHY

Query:  YQLHSRLVSLNQEVGQSVNEYFATFQPIWTQLDHAKISSDHIRLIKVLMGLRPEYKSVCAALLHCNPLPSLDAVIQEILFEEKRLGNVFSLPSDVALATT
        YQLHS LVSLNQEVGQSVNEY AT QPIWTQL+ AKIS DHI LIKVLMGLRPEY+SV AALLH NPLPSLD  IQ+ILFEEKRL    SLPSDVAL T+
Subjt:  YQLHSRLVSLNQEVGQSVNEYFATFQPIWTQLDHAKISSDHIRLIKVLMGLRPEYKSVCAALLHCNPLPSLDAVIQEILFEEKRLGNVFSLPSDVALATT

A0A5D3CPU5 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-8279.4Show/hide
Query:  GDITKPIKPTPPRKNISQDTIENVDANLSDVTIHETTAEDVKYIEKLKDWDSKNHQIITWLGNTSILAIHTQFDAFDTAKELWDFLFIHFQSIGLAHYYQ
        GDITKPIKPT P KNI         AN SDV IHETTAED+KYIE+L+DWDSKNHQIITWLGNTSI AIHTQ D+FDTAKELWDFL   FQSIGLAHYYQ
Subjt:  GDITKPIKPTPPRKNISQDTIENVDANLSDVTIHETTAEDVKYIEKLKDWDSKNHQIITWLGNTSILAIHTQFDAFDTAKELWDFLFIHFQSIGLAHYYQ

Query:  LHSRLVSLNQEVGQSVNEYFATFQPIWTQLDHAKISSDHIRLIKVLMGLRPEYKSVCAALLHCNPLPSLDAVIQEILFEEKRLGNVFSLPSDVALATTH
        L+S L++LNQEVGQSVNEY AT QPIWTQLD  KI+ DHIRLIKVLMGLRPEY+SV AALLH NPLPSLDA +QEILFEEKRLG V +LPSDVALATT+
Subjt:  LHSRLVSLNQEVGQSVNEYFATFQPIWTQLDHAKISSDHIRLIKVLMGLRPEYKSVCAALLHCNPLPSLDAVIQEILFEEKRLGNVFSLPSDVALATTH

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-945.8e-7875.62Show/hide
Query:  VTGDITKPIKPTPPRKNISQDTIENVDANLSDVTIHETTAEDVKYIEKLKDWDSKNHQIITWLGNTSILAIHTQFDAFDTAKELWDFLFIHFQSIGLAHY
        VTGDITKP+KP                       +HET+AED++YIE+L+DWDSKNHQIITWLGNTSI AIHTQFDAFD+AKELWDFL+  FQSIGLAHY
Subjt:  VTGDITKPIKPTPPRKNISQDTIENVDANLSDVTIHETTAEDVKYIEKLKDWDSKNHQIITWLGNTSILAIHTQFDAFDTAKELWDFLFIHFQSIGLAHY

Query:  YQLHSRLVSLNQEVGQSVNEYFATFQPIWTQLDHAKISSDHIRLIKVLMGLRPEYKSVCAALLHCNPLPSLDAVIQEILFEEKRLGNVFSLPSDVALATT
        YQLHS LVSLNQE+GQSVNEY AT QPIWTQLD AKIS DHIRLIKVLMGLRPEY+SV AALLH NPLPSLDA +QEILFEEKRLG V SL SDVALATT
Subjt:  YQLHSRLVSLNQEVGQSVNEYFATFQPIWTQLDHAKISSDHIRLIKVLMGLRPEYKSVCAALLHCNPLPSLDAVIQEILFEEKRLGNVFSLPSDVALATT

Query:  H
        H
Subjt:  H

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGCAGGCTGCAGAAAAATACCTGCCATCAGATTCGTCCACTACGACCCTCACTCCTGAAACCCACTTTCAGATCGTGACTTTCCAGCTCTCCTCCGCCTCTGTGTC
GAACGATTTCATCGTTCCAGATCTTCGACACCATCGCTCCAGATCTTTGATTCCATCGTTCCAAATTTCATTGCCTTTCTTTGTTCCAGACTTCTTTTACTCTGTCATTC
TCACGTTGTTTCGAGTTACTGGAGATATCACCAAACCTATCAAACCCACTCCTCCTAGGAAAAACATCAGTCAGGACACCATTGAGAATGTTGATGCAAACCTTTCTGAT
GTCACTATTCACGAGACTACTGCAGAAGACGTCAAGTACATTGAAAAACTTAAGGATTGGGATAGCAAAAATCATCAAATCATCACTTGGTTGGGTAACACTTCTATTTT
GGCTATTCATACTCAATTTGATGCATTTGATACTGCAAAAGAACTTTGGGATTTTCTGTTCATACATTTTCAGTCTATTGGGCTTGCTCATTATTATCAATTACATTCTC
GACTTGTTAGTCTAAACCAGGAGGTCGGACAATCTGTGAATGAATATTTTGCTACTTTTCAGCCTATTTGGACTCAGTTAGACCATGCAAAAATCAGCTCTGACCATATT
CGCCTCATCAAAGTCCTCATGGGACTCCGTCCAGAGTATAAATCAGTTTGTGCTGCTCTGTTACATTGCAACCCTTTGCCATCTCTCGACGCTGTCATTCAGGAGATTTT
ATTTGAGGAGAAAAGACTTGGCAATGTCTTCTCTCTGCCATCTGATGTCGCTCTTGCAACCACTCATCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGCAGGCTGCAGAAAAATACCTGCCATCAGATTCGTCCACTACGACCCTCACTCCTGAAACCCACTTTCAGATCGTGACTTTCCAGCTCTCCTCCGCCTCTGTGTC
GAACGATTTCATCGTTCCAGATCTTCGACACCATCGCTCCAGATCTTTGATTCCATCGTTCCAAATTTCATTGCCTTTCTTTGTTCCAGACTTCTTTTACTCTGTCATTC
TCACGTTGTTTCGAGTTACTGGAGATATCACCAAACCTATCAAACCCACTCCTCCTAGGAAAAACATCAGTCAGGACACCATTGAGAATGTTGATGCAAACCTTTCTGAT
GTCACTATTCACGAGACTACTGCAGAAGACGTCAAGTACATTGAAAAACTTAAGGATTGGGATAGCAAAAATCATCAAATCATCACTTGGTTGGGTAACACTTCTATTTT
GGCTATTCATACTCAATTTGATGCATTTGATACTGCAAAAGAACTTTGGGATTTTCTGTTCATACATTTTCAGTCTATTGGGCTTGCTCATTATTATCAATTACATTCTC
GACTTGTTAGTCTAAACCAGGAGGTCGGACAATCTGTGAATGAATATTTTGCTACTTTTCAGCCTATTTGGACTCAGTTAGACCATGCAAAAATCAGCTCTGACCATATT
CGCCTCATCAAAGTCCTCATGGGACTCCGTCCAGAGTATAAATCAGTTTGTGCTGCTCTGTTACATTGCAACCCTTTGCCATCTCTCGACGCTGTCATTCAGGAGATTTT
ATTTGAGGAGAAAAGACTTGGCAATGTCTTCTCTCTGCCATCTGATGTCGCTCTTGCAACCACTCATCCATGA
Protein sequenceShow/hide protein sequence
MWQAAEKYLPSDSSTTTLTPETHFQIVTFQLSSASVSNDFIVPDLRHHRSRSLIPSFQISLPFFVPDFFYSVILTLFRVTGDITKPIKPTPPRKNISQDTIENVDANLSD
VTIHETTAEDVKYIEKLKDWDSKNHQIITWLGNTSILAIHTQFDAFDTAKELWDFLFIHFQSIGLAHYYQLHSRLVSLNQEVGQSVNEYFATFQPIWTQLDHAKISSDHI
RLIKVLMGLRPEYKSVCAALLHCNPLPSLDAVIQEILFEEKRLGNVFSLPSDVALATTHP