CuGenDBv2

Gene ID	PI0001392
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	NADH-ubiquinone oxidoreductase chain 6
Genome location	chr10:1805121..1805695
RNA-Seq Expression	PI0001392
Synteny	PI0001392
Gene Ontology terms	GO:0005739 - mitochondrion (cellular component) GO:0031090 - organelle membrane (cellular component) GO:0031967 - organelle envelope (cellular component) GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function)
InterPro domains	IPR001457 - NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 IPR042106 - NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ

Homology

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GenBank top hits

e value

%identity

Alignment

AUD57050.1 NADH dehydrogenase subunit 6 [Pentas lanceolata]

1.9e-54

67.32

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Query:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK
        MILSVL SP LVSGLMVVRAKN V               LLLLLGL+ FAMIFPVVHIGAI V FLF+VMMF           LRYLP+SGIIGLIFWW+
Subjt:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK

Query:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTIIRRMTE
        M FILDNESIPLLPTQRNTTSLRYT+Y GKV+SWTNLE L NL YTYYFV  LV SLILL AMI A              D FRRNA+DFRRTI+RR T+
Subjt:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTIIRRMTE

Query:  PLTIY
        PLTIY
Subjt:  PLTIY

QJD13509.1 NADH dehydrogenase subunit 6 [Catharanthus roseus]

7.2e-54

67.32

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Query:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK
        MILSVL SP LVSGLMVVRAKN V               LLLLLGL+ FAMIF VV+IGAI VLFLF+VMMF           LRYLP+SGIIGLIFWW+
Subjt:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK

Query:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTIIRRMTE
        M FILDNESIPLLPTQRNTTSLRYT+Y GKV+SWTNLE L NL YTYYFV  LVSSLILL AMI A              D FRRNA+DFRRTI+RR T+
Subjt:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTIIRRMTE

Query:  PLTIY
        PLTIY
Subjt:  PLTIY

QYA18239.1 NADH dehydrogenase subunit 6 [Tetragonia tetragonoides]

5.5e-54

66.83

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Query:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK
        MILSVL SP LVSGLMVVRAKN V               LLLLLGL+ FAMIFPVV+IGAI V FLF+VMMF           LRYLP+SGIIGLIFWW+
Subjt:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK

Query:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTIIRRMTE
        M FILDNE+IPLLPTQRNTTSLRYT+Y GKV+SWTNLE L NL YTYYFV  LVSSLILL AMI A              D FRRNA+DFRRTI+RR T+
Subjt:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTIIRRMTE

Query:  PLTIY
        PLTIY
Subjt:  PLTIY

YP_009041169.1 NADH dehydrogenase subunit 6 [Rhazya stricta]

3.2e-54

67.32

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Query:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK
        MILSVL SP LVSGLMVVRAKN V               LLLLLGL+ FAMIFPVVHIGAI VLFLF+VMMF           LRYLP+SGIIGLIFWW+
Subjt:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK

Query:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTIIRRMTE
        M FILDNESIPLLPTQRNTTSLRYT+Y GKV+SWTNLE L NL YTYY V  LV SLILL AMI A              D FRRNA+DFRRTI+RR T+
Subjt:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTIIRRMTE

Query:  PLTIY
        PLTIY
Subjt:  PLTIY

YP_010026745.1 NADH dehydrogenase subunit 6 [Rhododendron simsii]

4.2e-54

67.32

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Query:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK
        MILSVL SP LVSGLMVVRAKN V               LLLLLGL+ FAMIFPVVHIGAI V FLF+VMMF           LRYLP+SGIIGLIFWW+
Subjt:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK

Query:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTIIRRMTE
        M FILDNESIPLLPTQRNTTSLRYT+Y GKV+SWTNLE L NL YTYY V  LVSSLILL AMI A              D FRRNA+DFRRTI+RR T+
Subjt:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTIIRRMTE

Query:  PLTIY
        PLTIY
Subjt:  PLTIY

TrEMBL top hits

e value

%identity

Alignment

A0A060D950 NADH-ubiquinone oxidoreductase chain 6

1.6e-54

67.32

Show/hide

Query:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK
        MILSVL SP LVSGLMVVRAKN V               LLLLLGL+ FAMIFPVVHIGAI VLFLF+VMMF           LRYLP+SGIIGLIFWW+
Subjt:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK

Query:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTIIRRMTE
        M FILDNESIPLLPTQRNTTSLRYT+Y GKV+SWTNLE L NL YTYY V  LV SLILL AMI A              D FRRNA+DFRRTI+RR T+
Subjt:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTIIRRMTE

Query:  PLTIY
        PLTIY
Subjt:  PLTIY

A0A2H4YAP8 NADH-ubiquinone oxidoreductase chain 6

9.2e-55

67.32

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Query:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK
        MILSVL SP LVSGLMVVRAKN V               LLLLLGL+ FAMIFPVVHIGAI V FLF+VMMF           LRYLP+SGIIGLIFWW+
Subjt:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK

Query:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTIIRRMTE
        M FILDNESIPLLPTQRNTTSLRYT+Y GKV+SWTNLE L NL YTYYFV  LV SLILL AMI A              D FRRNA+DFRRTI+RR T+
Subjt:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTIIRRMTE

Query:  PLTIY
        PLTIY
Subjt:  PLTIY

A0A3G1SU34 NADH-ubiquinone oxidoreductase chain 6

1.6e-54

67.32

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Query:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK
        MILSVL SP LVSGLMVVRAKN V               LLLLLGL+ FAMIFPVVHIGAI VLFLF+VMMF           LRYLP+SGIIGLIFWW+
Subjt:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK

Query:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTIIRRMTE
        M FILDNESIPLLPTQRNTTSLRYT+Y GKV+SWTNLE L NL YTYY V  LV SLILL AMI A              D FRRNA+DFRRTI+RR T+
Subjt:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTIIRRMTE

Query:  PLTIY
        PLTIY
Subjt:  PLTIY

A0A481X4G7 NADH-ubiquinone oxidoreductase chain 6

1.6e-54

67.32

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Query:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK
        MILSVL SP LVSGLMVVRAKN V               LLLLLGL+ FAMIFPVVHIGAI VLFLF+VMMF           LRYLP+SGIIGLIFWW+
Subjt:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK

Query:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTIIRRMTE
        M FILDNESIPLLPTQRNTTSLRYT+Y GKV+SWTNLE L NL YTYY V  LV SLILL AMI A              D FRRNA+DFRRTI+RR T+
Subjt:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTIIRRMTE

Query:  PLTIY
        PLTIY
Subjt:  PLTIY

A0A6M3RFD9 NADH-ubiquinone oxidoreductase chain 6

1.6e-54

67.32

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Query:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK
        MILSVL SP LVSGLMVVRAKN V               LLLLLGL+ FAMIFPVVHIGAI VLFLF+VMMF           LRYLP+SGIIGLIFWW+
Subjt:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK

Query:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTIIRRMTE
        M FILDNESIPLLPTQRNTTSLRYT+Y GKV+SWTNLE L NL YTYY V  LV SLILL AMI A              D FRRNA+DFRRTI+RR T+
Subjt:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTIIRRMTE

Query:  PLTIY
        PLTIY
Subjt:  PLTIY

SwissProt top hits

e value

%identity

Alignment

P26850 NADH-ubiquinone oxidoreductase chain 6

4.0e-31

48.45

Show/hide

Query:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK
        ++  V +   LVSG MV+RAKN V               LL+LLGL+ FAMIF VV++GAI VLFLF+VMM            LRYLP+ GIIGLIF  +
Subjt:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK

Query:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTI
        +  ++DN+ IP+LPT+ + T L YT+Y GK+ SWTNLE L NL YT YF   LVSSLILL A+I A              D F +NA+DF+ TI
Subjt:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTI

P60497 NADH-ubiquinone oxidoreductase chain 6

5.2e-55

66.34

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Query:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK
        MILSVL S  LVSGLMVVRAKN V               LLLLLGL+ FAMIF VV+IGAI VLFLF+VMMF           LRYLP+SGIIGLIFWW+
Subjt:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK

Query:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTIIRRMTE
        M FILDNESIPLLPTQRNTTSLRYT+Y GKV+SWTNLE L NL YTYYFV  LV SLILL AMI A              D FRRNA+DFRRTI+RR T+
Subjt:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTIIRRMTE

Query:  PLTIY
        PLTIY
Subjt:  PLTIY

P60498 NADH-ubiquinone oxidoreductase chain 6

6.2e-56

66.34

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Query:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK
        MILSVL SP LVSGLMV RAKN V               LLLLLGL+ FAMIFPVVHIGAI V FLF+VMMF           LRYLP+SGIIGLIFWW+
Subjt:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK

Query:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTIIRRMTE
        M FILDNESIPLLPTQRNTTSLRYT+Y GKV+SWTNLE L NL YTYY V  LV SLILL AMI A              D FRRNA+DFRRTI+RR T+
Subjt:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTIIRRMTE

Query:  PLTIY
        PLTIY
Subjt:  PLTIY

Q02500 NADH-ubiquinone oxidoreductase chain 6

6.2e-48

62.19

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Query:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK
        MILSVL SP LVSGLMVVRAKN V               LL+LLGL+  AMI PVVHIGAI V FLF+VMMF           LRYLP+SGIIGLIFWW+
Subjt:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK

Query:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTIIRRMTE
        M FILDNE+IPLLPT RNTTSLRYT+Y GKV+SWTNLE L NL YTYY V  LVSSLILL AMI A              D FRRNALD R  I+ R   
Subjt:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTIIRRMTE

Query:  P
        P
Subjt:  P

Q37626 NADH-ubiquinone oxidoreductase chain 6

1.3e-16

37.06

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Query:  VLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWKMLFI
        +  S TL+SG +V++A+N V               LL+LLGL+ FA+IF VV++GAI VLFLF+VMM            LRYLP+ G++G++F +++  +
Subjt:  VLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWKMLFI

Query:  LDNESIPLLPTQRNTTSLRYTIYVGKVQSWT-------NLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTI
        +DN+ IPLL      T+L           W         ++ L +L YTYYF   LV+SLILL AMI A                F +N  DF +TI
Subjt:  LDNESIPLLPTQRNTTSLRYTIYVGKVQSWT-------NLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTI

Arabidopsis top hits

e value

%identity

Alignment

ATMG00270.1 NADH dehydrogenase 6

4.4e-57

66.34

Show/hide

Query:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK
        MILSVL SP LVSGLMV RAKN V               LLLLLGL+ FAMIFPVVHIGAI V FLF+VMMF           LRYLP+SGIIGLIFWW+
Subjt:  MILSVLLSPTLVSGLMVVRAKNLVR--------------LLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMF----------FLRYLPMSGIIGLIFWWK

Query:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTIIRRMTE
        M FILDNESIPLLPTQRNTTSLRYT+Y GKV+SWTNLE L NL YTYY V  LV SLILL AMI A              D FRRNA+DFRRTI+RR T+
Subjt:  MLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSWTNLERLDNLFYTYYFVRLLVSSLILLAAMIEA--------------DAFRRNALDFRRTIIRRMTE

Query:  PLTIY
        PLTIY
Subjt:  PLTIY

Sequences

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CDS sequence

Show/hide CDS sequence

ATGATACTTTCAGTTTTGTTGAGCCCAACTTTGGTATCTGGATTGATGGTTGTACGTGCTAAAAATTTGGTACGCTTACTTCTTTTGTTAGGTCTCAATATCTTCGCTAT
GATCTTTCCAGTAGTTCATATAGGAGCTATAGTCGTTTTATTTCTATTTATTGTTATGATGTTCTTCTTGCGCTATTTACCAATGAGTGGTATTATTGGACTGATCTTTT
GGTGGAAAATGTTGTTCATTTTGGATAACGAAAGCATTCCATTACTACCAACCCAAAGAAATACGACCTCTCTTAGATATACGATTTATGTTGGAAAGGTACAAAGTTGG
ACTAATTTGGAAAGACTGGACAATTTATTTTATACCTACTATTTTGTTAGGTTGTTAGTTTCTAGTCTGATTTTATTAGCAGCCATGATTGAGGCAGATGCATTCCGAAG
AAATGCTTTAGATTTTAGGAGGACTATAATAAGGAGGATGACAGAACCACTCACGATCTACTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MILSVLLSPTLVSGLMVVRAKNLVRLLLLLGLNIFAMIFPVVHIGAIVVLFLFIVMMFFLRYLPMSGIIGLIFWWKMLFILDNESIPLLPTQRNTTSLRYTIYVGKVQSW
TNLERLDNLFYTYYFVRLLVSSLILLAAMIEADAFRRNALDFRRTIIRRMTEPLTIY

PI0001392 (gene) of Melon (PI 482460) v1 genome