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PI0001404 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0001404
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr10:1311212..1311865
RNA-Seq ExpressionPI0001404
SyntenyPI0001404
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031748.1 uncharacterized protein E6C27_scaffold506G00110 [Cucumis melo var. makuwa]1.5e-1039.38Show/hide
Query:  PSSSFDH-SDSDSNERDNVCLATLFRRAYFSTSFKISNEHIASVNTFSPKSPSLMREQPVSSQDVH------PNSAESDPLPSTVEPNIPPCSTSQEVP-
        PS S  H  + DS+E+ +V LA L ++ +          ++AS  + +P   S   ++  SS+DV        ++++ +P PS   P I     + E P 
Subjt:  PSSSFDH-SDSDSNERDNVCLATLFRRAYFSTSFKISNEHIASVNTFSPKSPSLMREQPVSSQDVH------PNSAESDPLPSTVEPNIPPCSTSQEVP-

Query:  -SEKVSPPFIPNTEFTGSNEPPVPSFSSSISPPCPGHENIVPLPKKPKVSSKRPRVITIKAGRKKLLLNIPSVPIDGISFHLEENVQRWKYVV
          E V P    NT+ T   EP V       +   PG    V  PK  K    R R IT K GRKK+ LNIPSVPIDGISFHLEENVQRWKYVV
Subjt:  -SEKVSPPFIPNTEFTGSNEPPVPSFSSSISPPCPGHENIVPLPKKPKVSSKRPRVITIKAGRKKLLLNIPSVPIDGISFHLEENVQRWKYVV

KAA0035674.1 uncharacterized protein E6C27_scaffold285G003740 [Cucumis melo var. makuwa]7.4e-1036.14Show/hide
Query:  PPVSNPSSSFDHSDSD----SNERDNVCLATLFRRAYFSTSFKISNEHIASVNTFSPKSPSLMREQPVSSQDVHPNSAESDPLPSTVEPNIPPCSTSQEV
        PP      SF+ S +D    S++ DNV LA L ++             +A+ + F+ KS       PV S  VH   + S        P +   S+ +  
Subjt:  PPVSNPSSSFDHSDSD----SNERDNVCLATLFRRAYFSTSFKISNEHIASVNTFSPKSPSLMREQPVSSQDVHPNSAESDPLPSTVEPNIPPCSTSQEV

Query:  PSEKVSPPFIPNTEFTGSNEPPVPSFSSSISPPCPGHENIV---------PLPKKPKVSSKRPRVITIKAGRKKLLLNIPSVPIDGISFHLEENVQRWKY
        PS    P   P T+   SN+P        + P   G+E++V           P + KV   R R IT K GRKK+ LNIPSVPIDGISFHLEE+VQRWK+
Subjt:  PSEKVSPPFIPNTEFTGSNEPPVPSFSSSISPPCPGHENIV---------PLPKKPKVSSKRPRVITIKAGRKKLLLNIPSVPIDGISFHLEENVQRWKY

Query:  VV
        VV
Subjt:  VV

KAA0053559.1 uncharacterized protein E6C27_scaffold190G001250 [Cucumis melo var. makuwa]1.4e-0846.34Show/hide
Query:  TEFTGSNEPPVPSFSSSISPPCPGHENIVPLPKKPKVSSKRP-RVITIKAGRKKLLLNIPSVPIDGISFHLEENVQRWKYVV
        TE    + PP+      I+P C G       PK PK  +++  R +T K GRKK+  N+PSVPIDG+SFH E+NVQRWK+V+
Subjt:  TEFTGSNEPPVPSFSSSISPPCPGHENIVPLPKKPKVSSKRP-RVITIKAGRKKLLLNIPSVPIDGISFHLEENVQRWKYVV

KAA0066044.1 uncharacterized protein E6C27_scaffold21G00170 [Cucumis melo var. makuwa]6.3e-0937.06Show/hide
Query:  PSSSFDH-SDSDSNERDNVCLATLFRRAY-FSTSFKISNEHIASVNT-FSPKSPSLMR--EQPVSSQDVH--PNSAESDPLPSTVEPNIPPCSTSQEVPS
        P+ S DH S  DS++ D+V L  L ++        K S +H  S +T  S  S  ++   +  V   D H  P +A S P+  T        + S+E P 
Subjt:  PSSSFDH-SDSDSNERDNVCLATLFRRAY-FSTSFKISNEHIASVNT-FSPKSPSLMR--EQPVSSQDVH--PNSAESDPLPSTVEPNIPPCSTSQEVPS

Query:  EKVS--PPFIPNTEFTGSNEPPVPSFSSSISPPCPGHENIVPLPKKPKVSSKR----PRVITIKAGRKKLLLNIPSVPIDGISFHLEENVQRWKYVV
        + V    P  P     G +   VP  + ++ P  P  +   P+P +PK + K+     R IT K GRKK+ LNIPSVPI+GISFHLEENV+RWK+VV
Subjt:  EKVS--PPFIPNTEFTGSNEPPVPSFSSSISPPCPGHENIVPLPKKPKVSSKR----PRVITIKAGRKKLLLNIPSVPIDGISFHLEENVQRWKYVV

TYK22185.1 uncharacterized protein E5676_scaffold333G00540 [Cucumis melo var. makuwa]1.4e-0833.51Show/hide
Query:  PSSSFDH---------SDSDSNERDNVCLATLFRRAYFSTSFKISNE-HIASVNTFSPKSPSLMREQPVSSQDVHPNSAESDPLPSTVEPNIPPCSTSQE
        P+SS  H         SD DSN+ D+V LA L +         +SN+ H+   ++F  +     +   + +  + P+++   P PS   P   P   S  
Subjt:  PSSSFDH---------SDSDSNERDNVCLATLFRRAYFSTSFKISNE-HIASVNTFSPKSPSLMREQPVSSQDVHPNSAESDPLPSTVEPNIPPCSTSQE

Query:  VPSEKVSPPFIPNTEFTGSNEPPVPSFSSSISPPCPGHENIVPLPKKPKVSSKRPRVITIKAGRKKLLLNIPSVPIDGISFHLEENVQRWKYVV
        V + +  P  +P     G + P VP  S+ I         +   P + K   KR   IT K  RKK+  NIPSVPIDGISFH EE+VQRWK+V+
Subjt:  VPSEKVSPPFIPNTEFTGSNEPPVPSFSSSISPPCPGHENIVPLPKKPKVSSKRPRVITIKAGRKKLLLNIPSVPIDGISFHLEENVQRWKYVV

TrEMBL top hitse value%identityAlignment
A0A5A7SM94 Uncharacterized protein7.2e-1139.38Show/hide
Query:  PSSSFDH-SDSDSNERDNVCLATLFRRAYFSTSFKISNEHIASVNTFSPKSPSLMREQPVSSQDVH------PNSAESDPLPSTVEPNIPPCSTSQEVP-
        PS S  H  + DS+E+ +V LA L ++ +          ++AS  + +P   S   ++  SS+DV        ++++ +P PS   P I     + E P 
Subjt:  PSSSFDH-SDSDSNERDNVCLATLFRRAYFSTSFKISNEHIASVNTFSPKSPSLMREQPVSSQDVH------PNSAESDPLPSTVEPNIPPCSTSQEVP-

Query:  -SEKVSPPFIPNTEFTGSNEPPVPSFSSSISPPCPGHENIVPLPKKPKVSSKRPRVITIKAGRKKLLLNIPSVPIDGISFHLEENVQRWKYVV
          E V P    NT+ T   EP V       +   PG    V  PK  K    R R IT K GRKK+ LNIPSVPIDGISFHLEENVQRWKYVV
Subjt:  -SEKVSPPFIPNTEFTGSNEPPVPSFSSSISPPCPGHENIVPLPKKPKVSSKRPRVITIKAGRKKLLLNIPSVPIDGISFHLEENVQRWKYVV

A0A5A7SWH6 Uncharacterized protein3.6e-1036.14Show/hide
Query:  PPVSNPSSSFDHSDSD----SNERDNVCLATLFRRAYFSTSFKISNEHIASVNTFSPKSPSLMREQPVSSQDVHPNSAESDPLPSTVEPNIPPCSTSQEV
        PP      SF+ S +D    S++ DNV LA L ++             +A+ + F+ KS       PV S  VH   + S        P +   S+ +  
Subjt:  PPVSNPSSSFDHSDSD----SNERDNVCLATLFRRAYFSTSFKISNEHIASVNTFSPKSPSLMREQPVSSQDVHPNSAESDPLPSTVEPNIPPCSTSQEV

Query:  PSEKVSPPFIPNTEFTGSNEPPVPSFSSSISPPCPGHENIV---------PLPKKPKVSSKRPRVITIKAGRKKLLLNIPSVPIDGISFHLEENVQRWKY
        PS    P   P T+   SN+P        + P   G+E++V           P + KV   R R IT K GRKK+ LNIPSVPIDGISFHLEE+VQRWK+
Subjt:  PSEKVSPPFIPNTEFTGSNEPPVPSFSSSISPPCPGHENIV---------PLPKKPKVSSKRPRVITIKAGRKKLLLNIPSVPIDGISFHLEENVQRWKY

Query:  VV
        VV
Subjt:  VV

A0A5A7VFF7 Uncharacterized protein3.0e-0937.06Show/hide
Query:  PSSSFDH-SDSDSNERDNVCLATLFRRAY-FSTSFKISNEHIASVNT-FSPKSPSLMR--EQPVSSQDVH--PNSAESDPLPSTVEPNIPPCSTSQEVPS
        P+ S DH S  DS++ D+V L  L ++        K S +H  S +T  S  S  ++   +  V   D H  P +A S P+  T        + S+E P 
Subjt:  PSSSFDH-SDSDSNERDNVCLATLFRRAY-FSTSFKISNEHIASVNT-FSPKSPSLMR--EQPVSSQDVH--PNSAESDPLPSTVEPNIPPCSTSQEVPS

Query:  EKVS--PPFIPNTEFTGSNEPPVPSFSSSISPPCPGHENIVPLPKKPKVSSKR----PRVITIKAGRKKLLLNIPSVPIDGISFHLEENVQRWKYVV
        + V    P  P     G +   VP  + ++ P  P  +   P+P +PK + K+     R IT K GRKK+ LNIPSVPI+GISFHLEENV+RWK+VV
Subjt:  EKVS--PPFIPNTEFTGSNEPPVPSFSSSISPPCPGHENIVPLPKKPKVSSKR----PRVITIKAGRKKLLLNIPSVPIDGISFHLEENVQRWKYVV

A0A5D3D6K3 Uncharacterized protein6.8e-0946.34Show/hide
Query:  TEFTGSNEPPVPSFSSSISPPCPGHENIVPLPKKPKVSSKRP-RVITIKAGRKKLLLNIPSVPIDGISFHLEENVQRWKYVV
        TE    + PP+      I+P C G       PK PK  +++  R +T K GRKK+  N+PSVPIDG+SFH E+NVQRWK+V+
Subjt:  TEFTGSNEPPVPSFSSSISPPCPGHENIVPLPKKPKVSSKRP-RVITIKAGRKKLLLNIPSVPIDGISFHLEENVQRWKYVV

A0A5D3DF71 Uncharacterized protein6.8e-0933.51Show/hide
Query:  PSSSFDH---------SDSDSNERDNVCLATLFRRAYFSTSFKISNE-HIASVNTFSPKSPSLMREQPVSSQDVHPNSAESDPLPSTVEPNIPPCSTSQE
        P+SS  H         SD DSN+ D+V LA L +         +SN+ H+   ++F  +     +   + +  + P+++   P PS   P   P   S  
Subjt:  PSSSFDH---------SDSDSNERDNVCLATLFRRAYFSTSFKISNE-HIASVNTFSPKSPSLMREQPVSSQDVHPNSAESDPLPSTVEPNIPPCSTSQE

Query:  VPSEKVSPPFIPNTEFTGSNEPPVPSFSSSISPPCPGHENIVPLPKKPKVSSKRPRVITIKAGRKKLLLNIPSVPIDGISFHLEENVQRWKYVV
        V + +  P  +P     G + P VP  S+ I         +   P + K   KR   IT K  RKK+  NIPSVPIDGISFH EE+VQRWK+V+
Subjt:  VPSEKVSPPFIPNTEFTGSNEPPVPSFSSSISPPCPGHENIVPLPKKPKVSSKRPRVITIKAGRKKLLLNIPSVPIDGISFHLEENVQRWKYVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGATCATCCACCTGTCTCAAATCCTTCTTCATCCTTTGATCACTCTGATTCTGATTCGAATGAAAGGGATAATGTTTGTCTGGCTACACTATTTCGTCGAGCTTA
TTTTTCAACATCCTTTAAAATTTCTAATGAGCATATTGCTTCTGTTAACACATTTAGCCCTAAATCACCTTCTTTAATGAGAGAACAACCTGTTTCTTCTCAAGATGTGC
ATCCAAATTCTGCAGAATCTGATCCATTACCATCGACTGTTGAACCTAATATTCCTCCTTGTTCCACCTCTCAGGAAGTTCCTTCTGAGAAAGTTTCACCTCCTTTTATT
CCAAATACTGAGTTTACCGGTTCTAATGAGCCTCCAGTTCCTTCTTTTTCCTCGTCTATCTCTCCTCCATGTCCTGGTCATGAAAATATTGTTCCTCTTCCTAAAAAACC
CAAAGTTTCTTCCAAAAGACCAAGAGTAATAACTATCAAAGCTGGTCGAAAAAAGTTGCTCCTCAATATTCCATCTGTTCCCATTGATGGCATCTCTTTTCATCTTGAAG
AGAATGTCCAAAGATGGAAATATGTTGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCATGATCATCCACCTGTCTCAAATCCTTCTTCATCCTTTGATCACTCTGATTCTGATTCGAATGAAAGGGATAATGTTTGTCTGGCTACACTATTTCGTCGAGCTTA
TTTTTCAACATCCTTTAAAATTTCTAATGAGCATATTGCTTCTGTTAACACATTTAGCCCTAAATCACCTTCTTTAATGAGAGAACAACCTGTTTCTTCTCAAGATGTGC
ATCCAAATTCTGCAGAATCTGATCCATTACCATCGACTGTTGAACCTAATATTCCTCCTTGTTCCACCTCTCAGGAAGTTCCTTCTGAGAAAGTTTCACCTCCTTTTATT
CCAAATACTGAGTTTACCGGTTCTAATGAGCCTCCAGTTCCTTCTTTTTCCTCGTCTATCTCTCCTCCATGTCCTGGTCATGAAAATATTGTTCCTCTTCCTAAAAAACC
CAAAGTTTCTTCCAAAAGACCAAGAGTAATAACTATCAAAGCTGGTCGAAAAAAGTTGCTCCTCAATATTCCATCTGTTCCCATTGATGGCATCTCTTTTCATCTTGAAG
AGAATGTCCAAAGATGGAAATATGTTGTGTAA
Protein sequenceShow/hide protein sequence
MHDHPPVSNPSSSFDHSDSDSNERDNVCLATLFRRAYFSTSFKISNEHIASVNTFSPKSPSLMREQPVSSQDVHPNSAESDPLPSTVEPNIPPCSTSQEVPSEKVSPPFI
PNTEFTGSNEPPVPSFSSSISPPCPGHENIVPLPKKPKVSSKRPRVITIKAGRKKLLLNIPSVPIDGISFHLEENVQRWKYVV