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PI0001410 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0001410
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein
Genome locationchr07:13420288..13420590
RNA-Seq ExpressionPI0001410
SyntenyPI0001410
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MCH92231.1 hypothetical protein [Trifolium medium]3.2e-2670.37Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFDDLKQRLVSTPILQSPN
        D AKIDVI  LP+PTC++++RSFLG AGFYRRFIKDFSKIALPL++LLQKD+ F  DDKCK+AFD LK+ L STP++Q P+
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFDDLKQRLVSTPILQSPN

XP_021603241.1 uncharacterized protein LOC110608326 [Manihot esculenta]1.9e-2669.14Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFDDLKQRLVSTPILQSPN
        DKAK+DVI+ LPYPTC++D+RSFLG AGFYRRFIKDFS+IA PL  LLQKDVPF  D++C++AF+ LK++LV+ PI+Q+PN
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFDDLKQRLVSTPILQSPN

XP_028797073.1 LOW QUALITY PROTEIN: uncharacterized protein LOC114752508 [Prosopis alba]1.9e-2672.84Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFDDLKQRLVSTPILQSPN
        DKAKID+I  LPYP+C+KDVRSFLG AGFYRRFI+DFSKIALPL+ LLQKDV FV DD C+ A+D+LK+RL + PI+Q PN
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFDDLKQRLVSTPILQSPN

XP_028798815.1 LOW QUALITY PROTEIN: uncharacterized protein LOC114754213 [Prosopis alba]1.9e-2672.84Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFDDLKQRLVSTPILQSPN
        DKAKID+I  LPYP+C+KDVRSFLG AGFYRRFI+DFSKIALPL+ LLQKDV FV DD C+ A+D+LK+RL + PI+Q PN
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFDDLKQRLVSTPILQSPN

XP_028802716.1 uncharacterized protein LOC114757797 [Prosopis alba]1.5e-2672.84Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFDDLKQRLVSTPILQSPN
        DKAKID+I  LPYP+C+KDVRSFLG AGFYRRFI+DFSKIALPL+ LLQKDV FV DD C+ A+D+LK+RL + PI+Q PN
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFDDLKQRLVSTPILQSPN

TrEMBL top hitse value%identityAlignment
A0A0L9TXH6 Reverse transcriptase3.9e-2567.9Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFDDLKQRLVSTPILQSPN
        D AKI VI +LPYP+C+++VRSFLG AGFYRRFIKDFSK  LPL+ LLQKD+ F  DD+CK+AFD LKQ L++TPI+Q+P+
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFDDLKQRLVSTPILQSPN

A0A151QL68 Transposon Ty3-G Gag-Pol polyprotein1.3e-2570.37Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFDDLKQRLVSTPILQSPN
        DKAKI+VI  LPYPTC+K++RSFLG AGFYRRFIKDFSKIA PL+ LLQKD  F  ++ C+ AFD+LK RLVS PIL +PN
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFDDLKQRLVSTPILQSPN

A0A2K3NDP5 RT_RNaseH_2 domain-containing protein (Fragment)1.0e-2571.6Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFDDLKQRLVSTPILQSPN
        D AKI+V   LPYP+C+ ++RSFLG AGFY RFIKDFSKIALPL++LLQKDV F  DDKCKKAFD LK  L STPI+Q PN
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFDDLKQRLVSTPILQSPN

A0A2U1NRI2 Reverse transcriptase3.0e-2570.37Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFDDLKQRLVSTPILQSPN
        DKAK+DVI KLP PT +K +RSFLG AGFYRRFIKDFSKIA PLT LL+KD+PF  DD+C+KAF+ LK++L  TPI+ SPN
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFDDLKQRLVSTPILQSPN

A0A392MXJ5 Uncharacterized protein (Fragment)1.6e-2670.37Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFDDLKQRLVSTPILQSPN
        D AKIDVI  LP+PTC++++RSFLG AGFYRRFIKDFSKIALPL++LLQKD+ F  DDKCK+AFD LK+ L STP++Q P+
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFDDLKQRLVSTPILQSPN

SwissProt top hitse value%identityAlignment
P03359 Gag-Pol polyprotein1.8e-1140.51Show/hide
Query:  AKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFDDLKQRLVSTPILQSPN
        A+   + K+P PT  + VR FLG+AGF R +I  F+ +A PL  L ++ +PF+  ++ +KAFD +K+ L+S P L  P+
Subjt:  AKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFDDLKQRLVSTPILQSPN

P04323 Retrovirus-related Pol polyprotein from transposon 17.64.4e-1040.51Show/hide
Query:  KIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPF-VIDDKCKKAFDDLKQRLVSTPILQSPN
        KI+ IQK P PT  K++++FLG  G+YR+FI +F+ IA P+T  L+K++     + +   AF  LK  +   PIL+ P+
Subjt:  KIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPF-VIDDKCKKAFDDLKQRLVSTPILQSPN

P10394 Retrovirus-related Pol polyprotein from transposon 4126.2e-1241.98Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFDDLKQRLVSTPILQSPN
        D  K DVIQ  P P      R F+    +YRRFIK+F+  +  +T L +K+VPF   D+C+KAF  LK +L++  +LQ P+
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFDDLKQRLVSTPILQSPN

P21414 Gag-Pol polyprotein3.1e-1139.24Show/hide
Query:  AKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFDDLKQRLVSTPILQSPN
        A+   + K+P PT  + VR FLG+AGF R +I  F+ +A PL  L ++ +PF+  ++ ++AFD +K+ L+S P L  P+
Subjt:  AKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFDDLKQRLVSTPILQSPN

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus2.3e-1135.11Show/hide
Query:  VSHDKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQ-----------KDVPFVIDDKCKKAFDDLKQRLVSTPILQSP
        +  D  K+  I ++P PT +K+++ FLG   +YR+FI+D++K+A PLT+L +             VP  +D+   ++F+DLK  L S+ IL  P
Subjt:  VSHDKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQ-----------KDVPFVIDDKCKKAFDDLKQRLVSTPILQSP

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein3.5e-1038.1Show/hide
Query:  VSHDKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFDDLKQRLVSTPILQSPN
        VS D AK++ +   P P    ++R FLG  G+YRRF+K++ KI  PLT LL+K+      +    AF  LK  + + P+L  P+
Subjt:  VSHDKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFDDLKQRLVSTPILQSPN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTATCACATGATAAAGCAAAAATTGATGTTATACAAAAATTGCCATATCCAACTTGTTTAAAGGATGTTAGGTCTTTCCTTGGTAGTGCCGGCTTTTATAGACGTTT
TATAAAAGATTTTTCTAAAATTGCTTTACCTCTAACTTCTCTCTTGCAAAAAGATGTGCCATTTGTGATTGATGACAAATGTAAAAAAGCATTTGATGATCTCAAGCAAA
GGTTAGTTTCTACTCCTATCCTTCAATCTCCTAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTATCACATGATAAAGCAAAAATTGATGTTATACAAAAATTGCCATATCCAACTTGTTTAAAGGATGTTAGGTCTTTCCTTGGTAGTGCCGGCTTTTATAGACGTTT
TATAAAAGATTTTTCTAAAATTGCTTTACCTCTAACTTCTCTCTTGCAAAAAGATGTGCCATTTGTGATTGATGACAAATGTAAAAAAGCATTTGATGATCTCAAGCAAA
GGTTAGTTTCTACTCCTATCCTTCAATCTCCTAATTAG
Protein sequenceShow/hide protein sequence
MVSHDKAKIDVIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFDDLKQRLVSTPILQSPN