; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0001411 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0001411
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr06:10035748..10036498
RNA-Seq ExpressionPI0001411
SyntenyPI0001411
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-7070.1Show/hide
Query:  KSHPGAKGLLHKSFPYYDNLSYVFGRDRTTGARAETFADVGSNVPNSFNDSVPLNDLHDEDIPTMYSQGVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRG
        +SHP AKGLLHKSFPYYD+LSYVFG D  TGA +ETFAD GSNV N FND VPL D H++DI T+YSQGV MS D++ G RAG++S+ RN SSGSKRKRG
Subjt:  KSHPGAKGLLHKSFPYYDNLSYVFGRDRTTGARAETFADVGSNVPNSFNDSVPLNDLHDEDIPTMYSQGVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRG

Query:  DQHSETVEVIKNAMDFANDQLRAIADWPKEKRATEVELRAEVMKQLDDIPELRSRDRVKLLRILFRSVDNTQGFLSVPPELKLEYCSILLEENV
         +H E VEVI +A +F NDQL+ I DWPKEKRATEVELR EV+KQL DIP+LRS+DR KL++ILFRSV+  +GFLS+P +LKLEYC+ILLE NV
Subjt:  DQHSETVEVIKNAMDFANDQLRAIADWPKEKRATEVELRAEVMKQLDDIPELRSRDRVKLLRILFRSVDNTQGFLSVPPELKLEYCSILLEENV

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.1e-7274.59Show/hide
Query:  KGLLHKSFPYYDNLSYVFGRDRTTGARAETFADVGSNVPNSFNDSVPLNDLHDEDIPTMYSQGVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGDQHSET
        K LLHKSFPYYD+L YVFG+DR T AR+ETFADVGSNVPN FN  VPL+D HD+DIP MYSQGV MSPD+M G RAG++S+ +NCSSGSKRK+G +H ET
Subjt:  KGLLHKSFPYYDNLSYVFGRDRTTGARAETFADVGSNVPNSFNDSVPLNDLHDEDIPTMYSQGVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGDQHSET

Query:  VEVIKNAMDFANDQLRAIADWPKEKRATEVELRAEVMKQLDDIPELRSRDRVKLLRILFRSVDNTQGFLSVPPELKLEYCSILLE
        VEVIK+A++F NDQL+AIA+WPKEKRATEVELRAEVMKQL DIPEL+SRDR KL++ILFRSV+  +GFLS+P E KLEYC+ILL+
Subjt:  VEVIKNAMDFANDQLRAIADWPKEKRATEVELRAEVMKQLDDIPELRSRDRVKLLRILFRSVDNTQGFLSVPPELKLEYCSILLE

KAA0042340.1 retrotransposon protein [Cucumis melo var. makuwa]6.0e-7269.9Show/hide
Query:  FDNWVKSHPGAKGLLHKSFPYYDNLSYVFGRDRTTGARAETFADVGSNVPNSFNDSVPLNDLHDEDIPTMYSQGVDMSPDDMVGTRAGRSSDGRNCSSGS
        F  W++SHP  KGLL+KSFPYYD++SYVFG+D+ T AR+ETFADVGSN+PN FND VPL D H EDIPTMYSQGV MS D+M GTRAG++S+ RNCSS S
Subjt:  FDNWVKSHPGAKGLLHKSFPYYDNLSYVFGRDRTTGARAETFADVGSNVPNSFNDSVPLNDLHDEDIPTMYSQGVDMSPDDMVGTRAGRSSDGRNCSSGS

Query:  KRKRGDQHSETVEVIKNAMDFANDQLRAIADWPKEKRATEVELRAEVMKQLDDIPELRSRDRVKLLRILFRSVDNTQGFLSVPPELKLEYCSILLE
        KRK+G QH ETVEVI++AM F NDQL+AIADW KEKRA +VELRA V+KQL DIP+L++RDR K+++ILF SV+  +GFLS+P ELKLEYC++LLE
Subjt:  KRKRGDQHSETVEVIKNAMDFANDQLRAIADWPKEKRATEVELRAEVMKQLDDIPELRSRDRVKLLRILFRSVDNTQGFLSVPPELKLEYCSILLE

KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-8167.26Show/hide
Query:  MRGPSCSGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFPYYDNLSYVFGRDRTTGARAETFADVGSNVPNSFNDSVPLNDLHDEDIPTMYSQGVD
        MRGPSCSGFGWNEE+QCIIAERDLFD+WVKSHP  KGLLHKSFPYYD+LSYVFG+DR TGAR+ETF DVGSNVPN FND++PL D HDEDIPTMYSQGV 
Subjt:  MRGPSCSGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFPYYDNLSYVFGRDRTTGARAETFADVGSNVPNSFNDSVPLNDLHDEDIPTMYSQGVD

Query:  MSPDDMVGTRAGRSSDGRNCSSGSKRKRGDQHSETVEVIKNAMDFANDQLRAIADWPKEKRATEVELRAEVMKQLDDIPELRSRDRVKLLRILFRSVDNT
        +SPD+M G RA                         EVI++ M+F N+QL+AIADW KEKRA E+E+RA+V+KQL DIPELRS+ R KL++ILFRS++  
Subjt:  MSPDDMVGTRAGRSSDGRNCSSGSKRKRGDQHSETVEVIKNAMDFANDQLRAIADWPKEKRATEVELRAEVMKQLDDIPELRSRDRVKLLRILFRSVDNT

Query:  QGFLSVPPELKLEYCSILLEENV
         GFLS+P ELKLEYC+ILL+ NV
Subjt:  QGFLSVPPELKLEYCSILLEENV

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]2.5e-9474.44Show/hide
Query:  MRGPSCSGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFPYYDNLSYVFGRDRTTGARAETFADVGSNVPNSFNDSVPLNDLHDEDIPTMYSQGVD
        MRGPSCSGFGWNEE+QCIIAERDLFD+W+KSHP AKGLLHKSFPYYD+LSYVFG+DR TGAR+ETF +VGSNV N FND++PL D HDEDIPTMYSQGV 
Subjt:  MRGPSCSGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFPYYDNLSYVFGRDRTTGARAETFADVGSNVPNSFNDSVPLNDLHDEDIPTMYSQGVD

Query:  MSPDDMVGTRAGRSSDGRNCSSGSKRKRGDQHSETVEVIKNAMDFANDQLRAIADWPKEKRATEVELRAEVMKQLDDIPELRSRDRVKLLRILFRSVDNT
        MSPD+M G RAG++S+ RNCSS SKRKRG +  ETVEVI++ M+F N+QL+AIADWPKEKRA EVE+RA+V+KQL DIP+LRS+DR KL++ILFRS++  
Subjt:  MSPDDMVGTRAGRSSDGRNCSSGSKRKRGDQHSETVEVIKNAMDFANDQLRAIADWPKEKRATEVELRAEVMKQLDDIPELRSRDRVKLLRILFRSVDNT

Query:  QGFLSVPPELKLEYCSILLEENV
        +GFLS+P ELKLEYC+ILL+  V
Subjt:  QGFLSVPPELKLEYCSILLEENV

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859531.2e-9474.44Show/hide
Query:  MRGPSCSGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFPYYDNLSYVFGRDRTTGARAETFADVGSNVPNSFNDSVPLNDLHDEDIPTMYSQGVD
        MRGPSCSGFGWNEE+QCIIAERDLFD+W+KSHP AKGLLHKSFPYYD+LSYVFG+DR TGAR+ETF +VGSNV N FND++PL D HDEDIPTMYSQGV 
Subjt:  MRGPSCSGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFPYYDNLSYVFGRDRTTGARAETFADVGSNVPNSFNDSVPLNDLHDEDIPTMYSQGVD

Query:  MSPDDMVGTRAGRSSDGRNCSSGSKRKRGDQHSETVEVIKNAMDFANDQLRAIADWPKEKRATEVELRAEVMKQLDDIPELRSRDRVKLLRILFRSVDNT
        MSPD+M G RAG++S+ RNCSS SKRKRG +  ETVEVI++ M+F N+QL+AIADWPKEKRA EVE+RA+V+KQL DIP+LRS+DR KL++ILFRS++  
Subjt:  MSPDDMVGTRAGRSSDGRNCSSGSKRKRGDQHSETVEVIKNAMDFANDQLRAIADWPKEKRATEVELRAEVMKQLDDIPELRSRDRVKLLRILFRSVDNT

Query:  QGFLSVPPELKLEYCSILLEENV
        +GFLS+P ELKLEYC+ILL+  V
Subjt:  QGFLSVPPELKLEYCSILLEENV

A0A5A7SQU2 Putative nuclease HARBI11.0e-7274.59Show/hide
Query:  KGLLHKSFPYYDNLSYVFGRDRTTGARAETFADVGSNVPNSFNDSVPLNDLHDEDIPTMYSQGVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGDQHSET
        K LLHKSFPYYD+L YVFG+DR T AR+ETFADVGSNVPN FN  VPL+D HD+DIP MYSQGV MSPD+M G RAG++S+ +NCSSGSKRK+G +H ET
Subjt:  KGLLHKSFPYYDNLSYVFGRDRTTGARAETFADVGSNVPNSFNDSVPLNDLHDEDIPTMYSQGVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGDQHSET

Query:  VEVIKNAMDFANDQLRAIADWPKEKRATEVELRAEVMKQLDDIPELRSRDRVKLLRILFRSVDNTQGFLSVPPELKLEYCSILLE
        VEVIK+A++F NDQL+AIA+WPKEKRATEVELRAEVMKQL DIPEL+SRDR KL++ILFRSV+  +GFLS+P E KLEYC+ILL+
Subjt:  VEVIKNAMDFANDQLRAIADWPKEKRATEVELRAEVMKQLDDIPELRSRDRVKLLRILFRSVDNTQGFLSVPPELKLEYCSILLE

A0A5A7U0H7 Retrotransposon protein1.2e-9474.44Show/hide
Query:  MRGPSCSGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFPYYDNLSYVFGRDRTTGARAETFADVGSNVPNSFNDSVPLNDLHDEDIPTMYSQGVD
        MRGPSCSGFGWNEE+QCIIAERDLFD+W+KSHP AKGLLHKSFPYYD+LSYVFG+DR TGAR+ETF +VGSNV N FND++PL D HDEDIPTMYSQGV 
Subjt:  MRGPSCSGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFPYYDNLSYVFGRDRTTGARAETFADVGSNVPNSFNDSVPLNDLHDEDIPTMYSQGVD

Query:  MSPDDMVGTRAGRSSDGRNCSSGSKRKRGDQHSETVEVIKNAMDFANDQLRAIADWPKEKRATEVELRAEVMKQLDDIPELRSRDRVKLLRILFRSVDNT
        MSPD+M G RAG++S+ RNCSS SKRKRG +  ETVEVI++ M+F N+QL+AIADWPKEKRA EVE+RA+V+KQL DIP+LRS+DR KL++ILFRS++  
Subjt:  MSPDDMVGTRAGRSSDGRNCSSGSKRKRGDQHSETVEVIKNAMDFANDQLRAIADWPKEKRATEVELRAEVMKQLDDIPELRSRDRVKLLRILFRSVDNT

Query:  QGFLSVPPELKLEYCSILLEENV
        +GFLS+P ELKLEYC+ILL+  V
Subjt:  QGFLSVPPELKLEYCSILLEENV

A0A5D3CVB7 Retrotransposon protein2.9e-7269.9Show/hide
Query:  FDNWVKSHPGAKGLLHKSFPYYDNLSYVFGRDRTTGARAETFADVGSNVPNSFNDSVPLNDLHDEDIPTMYSQGVDMSPDDMVGTRAGRSSDGRNCSSGS
        F  W++SHP  KGLL+KSFPYYD++SYVFG+D+ T AR+ETFADVGSN+PN FND VPL D H EDIPTMYSQGV MS D+M GTRAG++S+ RNCSS S
Subjt:  FDNWVKSHPGAKGLLHKSFPYYDNLSYVFGRDRTTGARAETFADVGSNVPNSFNDSVPLNDLHDEDIPTMYSQGVDMSPDDMVGTRAGRSSDGRNCSSGS

Query:  KRKRGDQHSETVEVIKNAMDFANDQLRAIADWPKEKRATEVELRAEVMKQLDDIPELRSRDRVKLLRILFRSVDNTQGFLSVPPELKLEYCSILLE
        KRK+G QH ETVEVI++AM F NDQL+AIADW KEKRA +VELRA V+KQL DIP+L++RDR K+++ILF SV+  +GFLS+P ELKLEYC++LLE
Subjt:  KRKRGDQHSETVEVIKNAMDFANDQLRAIADWPKEKRATEVELRAEVMKQLDDIPELRSRDRVKLLRILFRSVDNTQGFLSVPPELKLEYCSILLE

A0A5D3DG22 Retrotransposon protein6.9e-8267.26Show/hide
Query:  MRGPSCSGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFPYYDNLSYVFGRDRTTGARAETFADVGSNVPNSFNDSVPLNDLHDEDIPTMYSQGVD
        MRGPSCSGFGWNEE+QCIIAERDLFD+WVKSHP  KGLLHKSFPYYD+LSYVFG+DR TGAR+ETF DVGSNVPN FND++PL D HDEDIPTMYSQGV 
Subjt:  MRGPSCSGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFPYYDNLSYVFGRDRTTGARAETFADVGSNVPNSFNDSVPLNDLHDEDIPTMYSQGVD

Query:  MSPDDMVGTRAGRSSDGRNCSSGSKRKRGDQHSETVEVIKNAMDFANDQLRAIADWPKEKRATEVELRAEVMKQLDDIPELRSRDRVKLLRILFRSVDNT
        +SPD+M G RA                         EVI++ M+F N+QL+AIADW KEKRA E+E+RA+V+KQL DIPELRS+ R KL++ILFRS++  
Subjt:  MSPDDMVGTRAGRSSDGRNCSSGSKRKRGDQHSETVEVIKNAMDFANDQLRAIADWPKEKRATEVELRAEVMKQLDDIPELRSRDRVKLLRILFRSVDNT

Query:  QGFLSVPPELKLEYCSILLEENV
         GFLS+P ELKLEYC+ILL+ NV
Subjt:  QGFLSVPPELKLEYCSILLEENV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.2 unknown protein9.4e-0731.48Show/hide
Query:  SGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFPYYDNLSYVFGRDRTTG
        +GF W+     +IA+ D+++ ++++HP A+    K+ P Y NL ++FG++ + G
Subjt:  SGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFPYYDNLSYVFGRDRTTG

AT4G02210.1 unknown protein4.4e-0432.61Show/hide
Query:  GFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFPYYDNLSYVF
        GF W++  Q ++A+  ++D ++K HP ++    KS P Y +L  V+
Subjt:  GFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFPYYDNLSYVF

AT4G02210.2 unknown protein4.4e-0432.61Show/hide
Query:  GFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFPYYDNLSYVF
        GF W++  Q ++A+  ++D ++K HP ++    KS P Y +L  V+
Subjt:  GFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFPYYDNLSYVF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGGACCATCCTGCAGTGGGTTTGGGTGGAATGAAGAATATCAGTGCATCATCGCAGAACGCGACTTGTTTGATAATTGGGTCAAGAGTCATCCTGGGGCGAAAGG
ACTGTTACACAAATCATTTCCATATTATGACAATTTGTCGTACGTGTTCGGTAGAGATCGGACAACAGGAGCACGTGCGGAGACGTTTGCTGACGTGGGATCTAATGTGC
CAAATAGTTTTAACGACAGTGTTCCACTTAATGATCTACATGACGAAGACATCCCGACGATGTATAGCCAAGGGGTGGATATGTCCCCAGATGACATGGTAGGAACACGT
GCAGGTCGGTCAAGTGATGGACGGAACTGTTCAAGTGGGAGTAAGAGGAAACGGGGTGACCAACATAGTGAAACAGTGGAGGTGATCAAGAATGCAATGGACTTTGCAAA
TGATCAATTGAGGGCAATTGCGGATTGGCCAAAGGAGAAGCGTGCAACAGAGGTCGAATTGCGTGCTGAAGTCATGAAACAACTGGATGATATCCCCGAACTACGGAGTC
GAGATAGGGTAAAGCTTCTACGAATATTATTCCGTAGTGTTGATAACACACAGGGATTCCTGTCTGTCCCACCGGAACTGAAATTGGAGTATTGCAGTATTTTGTTGGAA
GAAAATGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGGGACCATCCTGCAGTGGGTTTGGGTGGAATGAAGAATATCAGTGCATCATCGCAGAACGCGACTTGTTTGATAATTGGGTCAAGAGTCATCCTGGGGCGAAAGG
ACTGTTACACAAATCATTTCCATATTATGACAATTTGTCGTACGTGTTCGGTAGAGATCGGACAACAGGAGCACGTGCGGAGACGTTTGCTGACGTGGGATCTAATGTGC
CAAATAGTTTTAACGACAGTGTTCCACTTAATGATCTACATGACGAAGACATCCCGACGATGTATAGCCAAGGGGTGGATATGTCCCCAGATGACATGGTAGGAACACGT
GCAGGTCGGTCAAGTGATGGACGGAACTGTTCAAGTGGGAGTAAGAGGAAACGGGGTGACCAACATAGTGAAACAGTGGAGGTGATCAAGAATGCAATGGACTTTGCAAA
TGATCAATTGAGGGCAATTGCGGATTGGCCAAAGGAGAAGCGTGCAACAGAGGTCGAATTGCGTGCTGAAGTCATGAAACAACTGGATGATATCCCCGAACTACGGAGTC
GAGATAGGGTAAAGCTTCTACGAATATTATTCCGTAGTGTTGATAACACACAGGGATTCCTGTCTGTCCCACCGGAACTGAAATTGGAGTATTGCAGTATTTTGTTGGAA
GAAAATGTTTGA
Protein sequenceShow/hide protein sequence
MRGPSCSGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFPYYDNLSYVFGRDRTTGARAETFADVGSNVPNSFNDSVPLNDLHDEDIPTMYSQGVDMSPDDMVGTR
AGRSSDGRNCSSGSKRKRGDQHSETVEVIKNAMDFANDQLRAIADWPKEKRATEVELRAEVMKQLDDIPELRSRDRVKLLRILFRSVDNTQGFLSVPPELKLEYCSILLE
ENV