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PI0001495 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0001495
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr06:21053489..21053916
RNA-Seq ExpressionPI0001495
SyntenyPI0001495
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043367.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.0e-4271.21Show/hide
Query:  MTSDKALFKDLDKSFKSKVKIGNNEYQE----------SYAGTKLITEVLFVPEINQNLLSIAQLIEKGFKVLFEEGKCLISDFNGNELFKIKMQHKSFL
        MTSDK LFKDLD SFKSKVKIGN  Y E          S AGTKLIT+VLF+ EI+QNLL++ QL+EK FKVLFEEGKCLISD NGNELFKI MQHKSF 
Subjt:  MTSDKALFKDLDKSFKSKVKIGNNEYQE----------SYAGTKLITEVLFVPEINQNLLSIAQLIEKGFKVLFEEGKCLISDFNGNELFKIKMQHKSFL

Query:  LDPLKKKQIAFKCQVNDTELWHKRLDIFIRKG
        L+ L+++Q+AFKCQVNDT+ WHKRL IFI KG
Subjt:  LDPLKKKQIAFKCQVNDTELWHKRLDIFIRKG

TYJ98110.1 putative transposon Ty5-1 protein YCL075W family [Cucumis melo var. makuwa]8.6e-4270.45Show/hide
Query:  MTSDKALFKDLDKSFKSKVKIGNNEYQE----------SYAGTKLITEVLFVPEINQNLLSIAQLIEKGFKVLFEEGKCLISDFNGNELFKIKMQHKSFL
        MTSDK LFKDLD SFKS+VKIGN+ Y E          S AGTKLIT+VLF+PEI+QNLL++ QL+EK FKVLFEEGKCLISD NGNELFKI MQ KSF 
Subjt:  MTSDKALFKDLDKSFKSKVKIGNNEYQE----------SYAGTKLITEVLFVPEINQNLLSIAQLIEKGFKVLFEEGKCLISDFNGNELFKIKMQHKSFL

Query:  LDPLKKKQIAFKCQVNDTELWHKRLDIFIRKG
        L+ L+++Q+AFKCQVNDT+ WHKRL IFI KG
Subjt:  LDPLKKKQIAFKCQVNDTELWHKRLDIFIRKG

XP_022158688.1 uncharacterized protein LOC111025149 [Momordica charantia]1.4e-3970.45Show/hide
Query:  MTSDKALFKDLDKSFKSKVKIGNNEYQ----------ESYAGTKLITEVLFVPEINQNLLSIAQLIEKGFKVLFEEGKCLISDFNGNELFKIKMQHKSFL
        M SDK LFKDLD+SFKS+VKIGN EY           ES  GTKLITEVLFVP I QNLLS+ QL+EKGFKVLFE  KCLISD NGNE FKIKMQHKSF 
Subjt:  MTSDKALFKDLDKSFKSKVKIGNNEYQ----------ESYAGTKLITEVLFVPEINQNLLSIAQLIEKGFKVLFEEGKCLISDFNGNELFKIKMQHKSFL

Query:  LDPLKKKQIAFKCQVNDTELWHKRLDIFIRKG
        LDP++K QI  KCQVNDTEL HKRL  F ++G
Subjt:  LDPLKKKQIAFKCQVNDTELWHKRLDIFIRKG

XP_038885771.1 uncharacterized protein LOC120076063 [Benincasa hispida]1.6e-4076.67Show/hide
Query:  MTSDKALFKDLDKSFKSKVKIGNNEYQ----------ESYAGTKLITEVLFVPEINQNLLSIAQLIEKGFKVLFEEGKCLISDFNGNELFKIKMQHKSFL
        MTSDK LFKDLDKSFKS+VKIGN+EY           ES   TKLITEVLFVPEI+QNLLS+ QL+EKGFKVLFE+GKCLISD NGN+LFKIKMQH  FL
Subjt:  MTSDKALFKDLDKSFKSKVKIGNNEYQ----------ESYAGTKLITEVLFVPEINQNLLSIAQLIEKGFKVLFEEGKCLISDFNGNELFKIKMQHKSFL

Query:  LDPLKKKQIAFKCQVNDTEL
        LDPL+K+QIAFKCQVNDTEL
Subjt:  LDPLKKKQIAFKCQVNDTEL

XP_038890984.1 uncharacterized protein LOC120080400 [Benincasa hispida]3.7e-3772.36Show/hide
Query:  MTSDKALFKDLDKSFKSKVKIGNNEYQ----------ESYAGTKLITEVLFVPEINQNLLSIAQLIEKGFKVLFEEGKCLISDFNGNELFKIKMQHKSFL
        MTSDK LFKDLDKSFKS++KIGN EY           ES AGTKLIT+VLFVPEI+QNLLS+ QL+EKGFKVLFEEGKCLI   NGNEL KIKMQHKSF 
Subjt:  MTSDKALFKDLDKSFKSKVKIGNNEYQ----------ESYAGTKLITEVLFVPEINQNLLSIAQLIEKGFKVLFEEGKCLISDFNGNELFKIKMQHKSFL

Query:  LDPLKKKQIAFKCQVNDTELWHK
        LDPL+KKQI FKCQV   +L  K
Subjt:  LDPLKKKQIAFKCQVNDTELWHK

TrEMBL top hitse value%identityAlignment
A0A1U8HMJ5 uncharacterized protein LOC1078875151.8e-2961.67Show/hide
Query:  MTSDKALFKDLDKSFKSKVKIGNNEYQ----------ESYAGTKLITEVLFVPEINQNLLSIAQLIEKGFKVLFEEGKCLISDFNGNELFKIKMQHKSFL
        MT D+ LFKDLD+S KSKV+IGN EY           ES  GTKLI +VLFVPEI+QNLLS+ QL+EK FKV+FEEG CLI D +GNELF IKMQ KSF 
Subjt:  MTSDKALFKDLDKSFKSKVKIGNNEYQ----------ESYAGTKLITEVLFVPEINQNLLSIAQLIEKGFKVLFEEGKCLISDFNGNELFKIKMQHKSFL

Query:  LDPLKKKQIAFKCQVNDTEL
        L+P +K+Q+A KCQ   T +
Subjt:  LDPLKKKQIAFKCQVNDTEL

A0A5A7TNI4 Retrovirus-related Pol polyprotein from transposon TNT 1-942.4e-4271.21Show/hide
Query:  MTSDKALFKDLDKSFKSKVKIGNNEYQE----------SYAGTKLITEVLFVPEINQNLLSIAQLIEKGFKVLFEEGKCLISDFNGNELFKIKMQHKSFL
        MTSDK LFKDLD SFKSKVKIGN  Y E          S AGTKLIT+VLF+ EI+QNLL++ QL+EK FKVLFEEGKCLISD NGNELFKI MQHKSF 
Subjt:  MTSDKALFKDLDKSFKSKVKIGNNEYQE----------SYAGTKLITEVLFVPEINQNLLSIAQLIEKGFKVLFEEGKCLISDFNGNELFKIKMQHKSFL

Query:  LDPLKKKQIAFKCQVNDTELWHKRLDIFIRKG
        L+ L+++Q+AFKCQVNDT+ WHKRL IFI KG
Subjt:  LDPLKKKQIAFKCQVNDTELWHKRLDIFIRKG

A0A5D3BE46 Putative transposon Ty5-1 protein YCL075W family4.1e-4270.45Show/hide
Query:  MTSDKALFKDLDKSFKSKVKIGNNEYQE----------SYAGTKLITEVLFVPEINQNLLSIAQLIEKGFKVLFEEGKCLISDFNGNELFKIKMQHKSFL
        MTSDK LFKDLD SFKS+VKIGN+ Y E          S AGTKLIT+VLF+PEI+QNLL++ QL+EK FKVLFEEGKCLISD NGNELFKI MQ KSF 
Subjt:  MTSDKALFKDLDKSFKSKVKIGNNEYQE----------SYAGTKLITEVLFVPEINQNLLSIAQLIEKGFKVLFEEGKCLISDFNGNELFKIKMQHKSFL

Query:  LDPLKKKQIAFKCQVNDTELWHKRLDIFIRKG
        L+ L+++Q+AFKCQVNDT+ WHKRL IFI KG
Subjt:  LDPLKKKQIAFKCQVNDTELWHKRLDIFIRKG

A0A6J1DWT9 uncharacterized protein LOC1110251496.6e-4070.45Show/hide
Query:  MTSDKALFKDLDKSFKSKVKIGNNEYQ----------ESYAGTKLITEVLFVPEINQNLLSIAQLIEKGFKVLFEEGKCLISDFNGNELFKIKMQHKSFL
        M SDK LFKDLD+SFKS+VKIGN EY           ES  GTKLITEVLFVP I QNLLS+ QL+EKGFKVLFE  KCLISD NGNE FKIKMQHKSF 
Subjt:  MTSDKALFKDLDKSFKSKVKIGNNEYQ----------ESYAGTKLITEVLFVPEINQNLLSIAQLIEKGFKVLFEEGKCLISDFNGNELFKIKMQHKSFL

Query:  LDPLKKKQIAFKCQVNDTELWHKRLDIFIRKG
        LDP++K QI  KCQVNDTEL HKRL  F ++G
Subjt:  LDPLKKKQIAFKCQVNDTELWHKRLDIFIRKG

A0A6P4PSP3 uncharacterized protein LOC1084815772.4e-2964.04Show/hide
Query:  MTSDKALFKDLDKSFKSKVKIGNNEYQ----------ESYAGTKLITEVLFVPEINQNLLSIAQLIEKGFKVLFEEGKCLISDFNGNELFKIKMQHKSFL
        MT D+ LFKDLD+S KSKV+IGN EY           ES  GTKLI++VLFVPEI+QNLLS+ QL+EK FKV+FEEG CLI D +GNELF IKMQ KSF 
Subjt:  MTSDKALFKDLDKSFKSKVKIGNNEYQ----------ESYAGTKLITEVLFVPEINQNLLSIAQLIEKGFKVLFEEGKCLISDFNGNELFKIKMQHKSFL

Query:  LDPLKKKQIAFKCQ
        L+P +K+Q+A KCQ
Subjt:  LDPLKKKQIAFKCQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G20980.1 Gag-Pol-related retrotransposon family protein5.8e-0432.04Show/hide
Query:  MTSDKALFKDLDKSFKSKVKIGNNEYQESYA---------------GTKLITEVLFVPEINQNLLSIAQLIEKGFKVLFEEGK-CLISDFNGNELFKIKM
        MT     F  LD+S K KVK  + +  E+                 G K I  VL+VP I  N LS++QL   GF+V  E    C + D    ++F   M
Subjt:  MTSDKALFKDLDKSFKSKVKIGNNEYQESYA---------------GTKLITEVLFVPEINQNLLSIAQLIEKGFKVLFEEGK-CLISDFNGNELFKIKM

Query:  QHK
          K
Subjt:  QHK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAGTGACAAAGCGTTGTTCAAGGACCTTGACAAGTCATTCAAGTCAAAGGTGAAGATAGGAAACAATGAATATCAAGAAAGTTATGCTGGAACCAAGTTGATTAC
TGAAGTGTTGTTTGTCCCTGAGATTAATCAAAATTTGTTGAGCATTGCTCAATTAATAGAGAAGGGATTCAAAGTGTTGTTTGAAGAAGGAAAGTGTCTCATTTCTGATT
TCAATGGAAACGAGTTGTTCAAAATAAAGATGCAGCACAAGAGCTTCTTATTGGATCCACTTAAGAAGAAGCAGATAGCTTTCAAATGTCAAGTGAATGACACTGAGTTA
TGGCACAAGAGGTTGGACATTTTCATTAGAAAGGGTTGTAGTACCTGCAGAAGAATGAGATGGCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGACAAGTGACAAAGCGTTGTTCAAGGACCTTGACAAGTCATTCAAGTCAAAGGTGAAGATAGGAAACAATGAATATCAAGAAAGTTATGCTGGAACCAAGTTGATTAC
TGAAGTGTTGTTTGTCCCTGAGATTAATCAAAATTTGTTGAGCATTGCTCAATTAATAGAGAAGGGATTCAAAGTGTTGTTTGAAGAAGGAAAGTGTCTCATTTCTGATT
TCAATGGAAACGAGTTGTTCAAAATAAAGATGCAGCACAAGAGCTTCTTATTGGATCCACTTAAGAAGAAGCAGATAGCTTTCAAATGTCAAGTGAATGACACTGAGTTA
TGGCACAAGAGGTTGGACATTTTCATTAGAAAGGGTTGTAGTACCTGCAGAAGAATGAGATGGCAATAA
Protein sequenceShow/hide protein sequence
MTSDKALFKDLDKSFKSKVKIGNNEYQESYAGTKLITEVLFVPEINQNLLSIAQLIEKGFKVLFEEGKCLISDFNGNELFKIKMQHKSFLLDPLKKKQIAFKCQVNDTEL
WHKRLDIFIRKGCSTCRRMRWQ