CuGenDBv2

Gene ID	PI0001511
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Ty3/gypsy retrotransposon protein
Genome location	chr06:23210435..23210881
RNA-Seq Expression	PI0001511
Synteny	PI0001511
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR000953 - Chromo/chromo shadow domain IPR016197 - Chromo-like domain superfamily IPR023780 - Chromo domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0033666.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]

7.9e-44

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Query:  MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVLGIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLF
        ++E +GAVAYRL+LP  AAIHNVFHISQLK KLG  Q VQH  P LTE+FEL++  E+VLGIRW+ ELRAN+WL+KW+G PES+A+WESVY MN+QFP F
Subjt:  MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVLGIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLF

Query:  HIEDNVQFEASGTVRPPIIHTYRRR
        H+ED V  E  G VRPPI+HTY+RR
Subjt:  HIEDNVQFEASGTVRPPIIHTYRRR

KAA0040538.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]

5.1e-43

67.2

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Query:  MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVLGIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLF
        ++E +GAVAYRL+LP  AAIHNVFHISQLK KLG  Q VQH  P LTE+FEL++  E+VLGIRW+ EL AN+WL+KW+G PES+A+WESVY MN+QFP F
Subjt:  MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVLGIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLF

Query:  HIEDNVQFEASGTVRPPIIHTYRRR
        H+ED V  E  G VRPPI+HTY+RR
Subjt:  HIEDNVQFEASGTVRPPIIHTYRRR

TYK02435.1 disease resistance protein [Cucumis melo var. makuwa]

1.5e-42

67.2

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Query:  MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVLGIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLF
        ++E +GAVAYRL+LP  AAIHNVFHISQLK KLG  Q VQH  P LTE+FEL++  E+VLGIRW+  L AN+WL+KW+G PESEA+WESVY MN+QFP F
Subjt:  MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVLGIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLF

Query:  HIEDNVQFEASGTVRPPIIHTYRRR
        H+ED V  E  G VRPPI+HTY+RR
Subjt:  HIEDNVQFEASGTVRPPIIHTYRRR

TYK28905.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

5.1e-43

61.43

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Query:  MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVLGIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLF
        ++E +GAVAYRL+LP  AAIHNVFHISQLK KLG  Q VQH  P LTE+FEL++  E+VLGIRW+ EL AN+WL+KW+  PESEA+WESVY MN+QFP F
Subjt:  MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVLGIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLF

Query:  HIEDNVQFEASGTVRPPIIHTYRRRKAGWGIMGNTQRIKK
        H+ED V  E+ G VRPPI+HTYRR +    +  N ++ K+
Subjt:  HIEDNVQFEASGTVRPPIIHTYRRRKAGWGIMGNTQRIKK

TYK29412.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

5.1e-43

68.8

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Query:  MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVLGIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLF
        ++E +GAVAYRLELP  AAIHNVFHISQLK KLG  Q VQ   P LTEDFEL++  E+VLGIRW  EL AN+WL+KW+G PESEA+WES Y MN+QFP F
Subjt:  MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVLGIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLF

Query:  HIEDNVQFEASGTVRPPIIHTYRRR
        H+ED V  E  G VRPPIIHTY+RR
Subjt:  HIEDNVQFEASGTVRPPIIHTYRRR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SUN8 Transposon Ty3-G Gag-Pol polyprotein

3.8e-44

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Query:  MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVLGIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLF
        ++E +GAVAYRL+LP  AAIHNVFHISQLK KLG  Q VQH  P LTE+FEL++  E+VLGIRW+ ELRAN+WL+KW+G PES+A+WESVY MN+QFP F
Subjt:  MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVLGIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLF

Query:  HIEDNVQFEASGTVRPPIIHTYRRR
        H+ED V  E  G VRPPI+HTY+RR
Subjt:  HIEDNVQFEASGTVRPPIIHTYRRR

A0A5A7TCB1 Retrotransposable element Tf2

2.5e-43

67.2

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Query:  MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVLGIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLF
        ++E +GAVAYRL+LP  AAIHNVFHISQLK KLG  Q VQH  P LTE+FEL++  E+VLGIRW+ EL AN+WL+KW+G PES+A+WESVY MN+QFP F
Subjt:  MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVLGIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLF

Query:  HIEDNVQFEASGTVRPPIIHTYRRR
        H+ED V  E  G VRPPI+HTY+RR
Subjt:  HIEDNVQFEASGTVRPPIIHTYRRR

A0A5A7TIE4 Putative retroelement pol polyprotein

7.2e-43

67.2

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Query:  MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVLGIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLF
        ++E +GAVAYRL+LP  AAIHNVFHISQLK KLG  Q VQH  P LTE+FEL++  E+VLGIRW+  L AN+WL+KW+G PESEA+WESVY MN+QFP F
Subjt:  MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVLGIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLF

Query:  HIEDNVQFEASGTVRPPIIHTYRRR
        H+ED V  E  G VRPPI+HTY+RR
Subjt:  HIEDNVQFEASGTVRPPIIHTYRRR

A0A5D3DZZ7 Ty3/gypsy retrotransposon protein

2.5e-43

61.43

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Query:  MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVLGIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLF
        ++E +GAVAYRL+LP  AAIHNVFHISQLK KLG  Q VQH  P LTE+FEL++  E+VLGIRW+ EL AN+WL+KW+  PESEA+WESVY MN+QFP F
Subjt:  MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVLGIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLF

Query:  HIEDNVQFEASGTVRPPIIHTYRRRKAGWGIMGNTQRIKK
        H+ED V  E+ G VRPPI+HTYRR +    +  N ++ K+
Subjt:  HIEDNVQFEASGTVRPPIIHTYRRRKAGWGIMGNTQRIKK

A0A5D3E0H6 Ty3/gypsy retrotransposon protein

2.5e-43

68.8

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Query:  MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVLGIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLF
        ++E +GAVAYRLELP  AAIHNVFHISQLK KLG  Q VQ   P LTEDFEL++  E+VLGIRW  EL AN+WL+KW+G PESEA+WES Y MN+QFP F
Subjt:  MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVLGIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLF

Query:  HIEDNVQFEASGTVRPPIIHTYRRR
        H+ED V  E  G VRPPIIHTY+RR
Subjt:  HIEDNVQFEASGTVRPPIIHTYRRR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGTGGAAACTTTAGGGGCAGTGGCTTATCGTTTGGAGCTACCTTCTGGGGCCGCTATACACAATGTATTTCATATATCCCAACTTAAGTTTAAGTTGGGACGTAATCA
AAAGGTGCAACATATGCCTCCGACACTAACTGAAGATTTTGAGCTGGAAGTATTACTAGAATCTGTTTTGGGGATCCGTTGGCATAGTGAGCTAAGAGCCAATAAGTGGT
TGGTGAAATGGAAGGGCTACCCCGAAAGCGAAGCATCTTGGGAATCAGTCTATTTAATGAACAAACAATTTCCTTTGTTCCACATTGAAGACAATGTGCAATTTGAAGCA
AGCGGAACTGTTAGACCTCCTATTATTCACACCTACAGAAGAAGGAAGGCAGGATGGGGTATAATGGGAAATACACAGAGGATAAAAAAAGATGATAATTTGGAGGGGAC
CCACTAG

mRNA sequence

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Protein sequence

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MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVLGIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLFHIEDNVQFEA
SGTVRPPIIHTYRRRKAGWGIMGNTQRIKKDDNLEGTH

PI0001511 (gene) of Melon (PI 482460) v1 genome