; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0001550 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0001550
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr03:9249045..9249761
RNA-Seq ExpressionPI0001550
SyntenyPI0001550
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037436.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.7e-5249.31Show/hide
Query:  ARLCKWLWLYQTESNLLWKKIILAKYKGSNVDEI-PTQGKYSSMNAPWRSIVKGIDWFESQCKWEINNGDNLSFWHGNWNDKSPLSRTYLRLYAISQSQK
        A LCKWLW +Q E + LW +II AKYKG ++ +  PT GKYSSM APWR I+K I WF++   WEI +G+NLSFWH NW     LS TY RLY +S++Q 
Subjt:  ARLCKWLWLYQTESNLLWKKIILAKYKGSNVDEI-PTQGKYSSMNAPWRSIVKGIDWFESQCKWEINNGDNLSFWHGNWNDKSPLSRTYLRLYAISQSQK

Query:  ATINENWDSIRGDWLIEQRRSLNDREKLSWCNIKRTIPIPNPNPNRGSSRLNWRLNENNSFTIASVKQSLIRSAQREEPVAGKQTF-KFLWKSTVPKKYK
        ATI E WD    DW +  RR LNDRE   W N+K  + I     N G + + W  N+  ++T AS K+ L+  ++R  P   ++ F + LWKS +PKK K
Subjt:  ATINENWDSIRGDWLIEQRRSLNDREKLSWCNIKRTIPIPNPNPNRGSSRLNWRLNENNSFTIASVKQSLIRSAQREEPVAGKQTF-KFLWKSTVPKKYK

Query:  FFTWTIIHESINTLDVL
        FF W++ HESINT DVL
Subjt:  FFTWTIIHESINTLDVL

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.9e-4942.92Show/hide
Query:  SSKERKGIGYLIDGRYKFARLCKWLWLYQTESNLLWKKIILAKYKGSNVDEIPTQGKYSSMNAPWRSIVKGIDWFESQCKWEINNGDNLSFWHGNWNDKS
        S KE+ G+G        FA LCKWLW + TE   LWK++I++KY    +   P++GKYSS N+PW+++   I WF     W++N+G+++SFW  NWN  S
Subjt:  SSKERKGIGYLIDGRYKFARLCKWLWLYQTESNLLWKKIILAKYKGSNVDEIPTQGKYSSMNAPWRSIVKGIDWFESQCKWEINNGDNLSFWHGNWNDKS

Query:  PLSRTYLRLYAISQSQKATINENWDSIRGDWLIEQRRSLNDREKLSWCNIKRTIPIPNPNPNRGSSRLNWRLNENNSFTIASVKQSLIRSAQREEPVAGK
        PLS    RL+A+S ++K ++ + W+    DW I   R L D EK  W NIK +  +P P P+RG S+  W+LN NN F  AS+K+ L   A         
Subjt:  PLSRTYLRLYAISQSQKATINENWDSIRGDWLIEQRRSLNDREKLSWCNIKRTIPIPNPNPNRGSSRLNWRLNENNSFTIASVKQSLIRSAQREEPVAGK

Query:  QTFKFLWKSTVPKKYKFFTWTIIHESINTLDVL
          +K LWK   PKK KFF WT+IH  INT D L
Subjt:  QTFKFLWKSTVPKKYKFFTWTIIHESINTLDVL

KAA0056839.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.4e-5042.06Show/hide
Query:  CKSSKERKGIGYLIDGRYKFARLCKWLWLYQTESNLLWKKIILAKYKGSNVDEIPTQGKYSSMNAPWRSIVKGIDWFESQCKWEINNGDNLSFWHGNWND
        C S KE  G+G         A LCKWLW Y  ESN LWKK I AKY  ++  +IP  G+ SS N+PW +I K  DW+ES+  W  N+G +LSFWH  W++
Subjt:  CKSSKERKGIGYLIDGRYKFARLCKWLWLYQTESNLLWKKIILAKYKGSNVDEIPTQGKYSSMNAPWRSIVKGIDWFESQCKWEINNGDNLSFWHGNWND

Query:  KSPLSRTYLRLYAISQSQKATINENWDSIRGDWLIEQRRSLNDREKLSWCNIKRTIPIPNPNPNRGSSRLNWRLNENNSFTIASVKQSLIRSAQREEPVA
          PLS  + RLYA+S  Q AT+ E WD    DW +E RR LN+RE+ +W +IK  + +P  + NRG  + +W  +++  +T+AS K    + +   +   
Subjt:  KSPLSRTYLRLYAISQSQKATINENWDSIRGDWLIEQRRSLNDREKLSWCNIKRTIPIPNPNPNRGSSRLNWRLNENNSFTIASVKQSLIRSAQREEPVA

Query:  GKQTFKFLWKSTVPKKYKFFTWTIIHESINTLD
         ++  K LW+S +P+K KFF WT++H+ +NT+D
Subjt:  GKQTFKFLWKSTVPKKYKFFTWTIIHESINTLD

TYK00226.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.7e-5249.31Show/hide
Query:  ARLCKWLWLYQTESNLLWKKIILAKYKGSNVDEI-PTQGKYSSMNAPWRSIVKGIDWFESQCKWEINNGDNLSFWHGNWNDKSPLSRTYLRLYAISQSQK
        A LCKWLW +Q E + LW +II AKYKG ++ +  PT GKYSSM APWR I+K I WF++   WEI +G+NLSFWH NW     LS TY RLY +S++Q 
Subjt:  ARLCKWLWLYQTESNLLWKKIILAKYKGSNVDEI-PTQGKYSSMNAPWRSIVKGIDWFESQCKWEINNGDNLSFWHGNWNDKSPLSRTYLRLYAISQSQK

Query:  ATINENWDSIRGDWLIEQRRSLNDREKLSWCNIKRTIPIPNPNPNRGSSRLNWRLNENNSFTIASVKQSLIRSAQREEPVAGKQTF-KFLWKSTVPKKYK
        ATI E WD    DW +  RR LNDRE   W N+K  + I     N G + + W  N+  ++T AS K+ L+  ++R  P   ++ F + LWKS +PKK K
Subjt:  ATINENWDSIRGDWLIEQRRSLNDREKLSWCNIKRTIPIPNPNPNRGSSRLNWRLNENNSFTIASVKQSLIRSAQREEPVAGKQTF-KFLWKSTVPKKYK

Query:  FFTWTIIHESINTLDVL
        FF W++ HESINT DVL
Subjt:  FFTWTIIHESINTLDVL

TYK08190.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.6e-4941.63Show/hide
Query:  CKSSKERKGIGYLIDGRYKFARLCKWLWLYQTESNLLWKKIILAKYKGSNVDEIPTQGKYSSMNAPWRSIVKGIDWFESQCKWEINNGDNLSFWHGNWND
        C S KE  G+G         A LCKWLW Y  ESN LWKK I AKY  ++  +IP  G+ SS N+PW +I K  DW+ES+  W  N+G +LSFWH  W++
Subjt:  CKSSKERKGIGYLIDGRYKFARLCKWLWLYQTESNLLWKKIILAKYKGSNVDEIPTQGKYSSMNAPWRSIVKGIDWFESQCKWEINNGDNLSFWHGNWND

Query:  KSPLSRTYLRLYAISQSQKATINENWDSIRGDWLIEQRRSLNDREKLSWCNIKRTIPIPNPNPNRGSSRLNWRLNENNSFTIASVKQSLIRSAQREEPVA
          PLS    RLYA+S  Q AT+ E WD    DW ++ RR LN+RE+ +W +IK  + +P  + NRG  +  W  +++  +T+AS K    + +   +   
Subjt:  KSPLSRTYLRLYAISQSQKATINENWDSIRGDWLIEQRRSLNDREKLSWCNIKRTIPIPNPNPNRGSSRLNWRLNENNSFTIASVKQSLIRSAQREEPVA

Query:  GKQTFKFLWKSTVPKKYKFFTWTIIHESINTLD
         ++  K LW+S +P+K KFF WT++H+ +NT+D
Subjt:  GKQTFKFLWKSTVPKKYKFFTWTIIHESINTLD

TrEMBL top hitse value%identityAlignment
A0A5A7T5L3 LINE-1 retrotransposable element ORF2 protein2.7e-5249.31Show/hide
Query:  ARLCKWLWLYQTESNLLWKKIILAKYKGSNVDEI-PTQGKYSSMNAPWRSIVKGIDWFESQCKWEINNGDNLSFWHGNWNDKSPLSRTYLRLYAISQSQK
        A LCKWLW +Q E + LW +II AKYKG ++ +  PT GKYSSM APWR I+K I WF++   WEI +G+NLSFWH NW     LS TY RLY +S++Q 
Subjt:  ARLCKWLWLYQTESNLLWKKIILAKYKGSNVDEI-PTQGKYSSMNAPWRSIVKGIDWFESQCKWEINNGDNLSFWHGNWNDKSPLSRTYLRLYAISQSQK

Query:  ATINENWDSIRGDWLIEQRRSLNDREKLSWCNIKRTIPIPNPNPNRGSSRLNWRLNENNSFTIASVKQSLIRSAQREEPVAGKQTF-KFLWKSTVPKKYK
        ATI E WD    DW +  RR LNDRE   W N+K  + I     N G + + W  N+  ++T AS K+ L+  ++R  P   ++ F + LWKS +PKK K
Subjt:  ATINENWDSIRGDWLIEQRRSLNDREKLSWCNIKRTIPIPNPNPNRGSSRLNWRLNENNSFTIASVKQSLIRSAQREEPVAGKQTF-KFLWKSTVPKKYK

Query:  FFTWTIIHESINTLDVL
        FF W++ HESINT DVL
Subjt:  FFTWTIIHESINTLDVL

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein2.8e-4942.92Show/hide
Query:  SSKERKGIGYLIDGRYKFARLCKWLWLYQTESNLLWKKIILAKYKGSNVDEIPTQGKYSSMNAPWRSIVKGIDWFESQCKWEINNGDNLSFWHGNWNDKS
        S KE+ G+G        FA LCKWLW + TE   LWK++I++KY    +   P++GKYSS N+PW+++   I WF     W++N+G+++SFW  NWN  S
Subjt:  SSKERKGIGYLIDGRYKFARLCKWLWLYQTESNLLWKKIILAKYKGSNVDEIPTQGKYSSMNAPWRSIVKGIDWFESQCKWEINNGDNLSFWHGNWNDKS

Query:  PLSRTYLRLYAISQSQKATINENWDSIRGDWLIEQRRSLNDREKLSWCNIKRTIPIPNPNPNRGSSRLNWRLNENNSFTIASVKQSLIRSAQREEPVAGK
        PLS    RL+A+S ++K ++ + W+    DW I   R L D EK  W NIK +  +P P P+RG S+  W+LN NN F  AS+K+ L   A         
Subjt:  PLSRTYLRLYAISQSQKATINENWDSIRGDWLIEQRRSLNDREKLSWCNIKRTIPIPNPNPNRGSSRLNWRLNENNSFTIASVKQSLIRSAQREEPVAGK

Query:  QTFKFLWKSTVPKKYKFFTWTIIHESINTLDVL
          +K LWK   PKK KFF WT+IH  INT D L
Subjt:  QTFKFLWKSTVPKKYKFFTWTIIHESINTLDVL

A0A5A7US62 LINE-1 retrotransposable element ORF2 protein3.7e-4941.63Show/hide
Query:  CKSSKERKGIGYLIDGRYKFARLCKWLWLYQTESNLLWKKIILAKYKGSNVDEIPTQGKYSSMNAPWRSIVKGIDWFESQCKWEINNGDNLSFWHGNWND
        C S KE  G+G         A LCKWLW Y  ESN LWKK I AKY  ++  +IP  G+ SS N+PW +I K  DW+ES+  W  N+G +LSFWH  W++
Subjt:  CKSSKERKGIGYLIDGRYKFARLCKWLWLYQTESNLLWKKIILAKYKGSNVDEIPTQGKYSSMNAPWRSIVKGIDWFESQCKWEINNGDNLSFWHGNWND

Query:  KSPLSRTYLRLYAISQSQKATINENWDSIRGDWLIEQRRSLNDREKLSWCNIKRTIPIPNPNPNRGSSRLNWRLNENNSFTIASVKQSLIRSAQREEPVA
          PLS    RLYA+S  Q AT+ E WD    DW ++ RR LN+RE+ +W +IK  + +P  + NRG  +  W  +++  +T+AS K    + +   +   
Subjt:  KSPLSRTYLRLYAISQSQKATINENWDSIRGDWLIEQRRSLNDREKLSWCNIKRTIPIPNPNPNRGSSRLNWRLNENNSFTIASVKQSLIRSAQREEPVA

Query:  GKQTFKFLWKSTVPKKYKFFTWTIIHESINTLD
         ++  K LW+S +P+K KFF WT++H+ +NT+D
Subjt:  GKQTFKFLWKSTVPKKYKFFTWTIIHESINTLD

A0A5A7UTI6 LINE-1 retrotransposable element ORF2 protein1.2e-5042.06Show/hide
Query:  CKSSKERKGIGYLIDGRYKFARLCKWLWLYQTESNLLWKKIILAKYKGSNVDEIPTQGKYSSMNAPWRSIVKGIDWFESQCKWEINNGDNLSFWHGNWND
        C S KE  G+G         A LCKWLW Y  ESN LWKK I AKY  ++  +IP  G+ SS N+PW +I K  DW+ES+  W  N+G +LSFWH  W++
Subjt:  CKSSKERKGIGYLIDGRYKFARLCKWLWLYQTESNLLWKKIILAKYKGSNVDEIPTQGKYSSMNAPWRSIVKGIDWFESQCKWEINNGDNLSFWHGNWND

Query:  KSPLSRTYLRLYAISQSQKATINENWDSIRGDWLIEQRRSLNDREKLSWCNIKRTIPIPNPNPNRGSSRLNWRLNENNSFTIASVKQSLIRSAQREEPVA
          PLS  + RLYA+S  Q AT+ E WD    DW +E RR LN+RE+ +W +IK  + +P  + NRG  + +W  +++  +T+AS K    + +   +   
Subjt:  KSPLSRTYLRLYAISQSQKATINENWDSIRGDWLIEQRRSLNDREKLSWCNIKRTIPIPNPNPNRGSSRLNWRLNENNSFTIASVKQSLIRSAQREEPVA

Query:  GKQTFKFLWKSTVPKKYKFFTWTIIHESINTLD
         ++  K LW+S +P+K KFF WT++H+ +NT+D
Subjt:  GKQTFKFLWKSTVPKKYKFFTWTIIHESINTLD

A0A5D3BPP1 LINE-1 retrotransposable element ORF2 protein2.7e-5249.31Show/hide
Query:  ARLCKWLWLYQTESNLLWKKIILAKYKGSNVDEI-PTQGKYSSMNAPWRSIVKGIDWFESQCKWEINNGDNLSFWHGNWNDKSPLSRTYLRLYAISQSQK
        A LCKWLW +Q E + LW +II AKYKG ++ +  PT GKYSSM APWR I+K I WF++   WEI +G+NLSFWH NW     LS TY RLY +S++Q 
Subjt:  ARLCKWLWLYQTESNLLWKKIILAKYKGSNVDEI-PTQGKYSSMNAPWRSIVKGIDWFESQCKWEINNGDNLSFWHGNWNDKSPLSRTYLRLYAISQSQK

Query:  ATINENWDSIRGDWLIEQRRSLNDREKLSWCNIKRTIPIPNPNPNRGSSRLNWRLNENNSFTIASVKQSLIRSAQREEPVAGKQTF-KFLWKSTVPKKYK
        ATI E WD    DW +  RR LNDRE   W N+K  + I     N G + + W  N+  ++T AS K+ L+  ++R  P   ++ F + LWKS +PKK K
Subjt:  ATINENWDSIRGDWLIEQRRSLNDREKLSWCNIKRTIPIPNPNPNRGSSRLNWRLNENNSFTIASVKQSLIRSAQREEPVAGKQTF-KFLWKSTVPKKYK

Query:  FFTWTIIHESINTLDVL
        FF W++ HESINT DVL
Subjt:  FFTWTIIHESINTLDVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCAATTGTAAAAGCTCCAAAGAACGAAAGGGGATTGGGTATCTCATCGATGGAAGATACAAATTTGCTCGCCTTTGCAAATGGTTATGGCTCTACCAAACAGAGTC
AAATCTCCTTTGGAAGAAGATCATCTTAGCGAAATATAAAGGTTCAAATGTAGATGAAATCCCAACCCAAGGTAAATATAGTAGCATGAATGCTCCGTGGCGCTCTATCG
TCAAAGGTATAGATTGGTTCGAAAGCCAATGTAAATGGGAAATAAACAATGGTGACAACCTTTCTTTCTGGCATGGAAACTGGAATGATAAAAGTCCACTTTCAAGGACT
TATCTCAGATTATATGCCATCTCCCAGAGCCAAAAAGCAACTATAAATGAGAATTGGGATAGCATTAGAGGAGATTGGCTCATTGAACAAAGAAGATCCTTAAATGACAG
GGAAAAATTGTCATGGTGCAACATCAAAAGAACTATTCCAATTCCAAATCCAAATCCAAACAGAGGAAGCAGCAGGCTGAATTGGAGACTAAATGAAAACAATAGTTTCA
CGATAGCCAGTGTTAAGCAATCGTTGATCAGAAGCGCACAAAGAGAAGAACCAGTCGCAGGTAAACAAACTTTCAAATTCCTTTGGAAATCGACGGTTCCAAAAAAATAT
AAGTTCTTTACCTGGACAATCATCCATGAAAGTATCAATACTTTAGACGTTCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTCAATTGTAAAAGCTCCAAAGAACGAAAGGGGATTGGGTATCTCATCGATGGAAGATACAAATTTGCTCGCCTTTGCAAATGGTTATGGCTCTACCAAACAGAGTC
AAATCTCCTTTGGAAGAAGATCATCTTAGCGAAATATAAAGGTTCAAATGTAGATGAAATCCCAACCCAAGGTAAATATAGTAGCATGAATGCTCCGTGGCGCTCTATCG
TCAAAGGTATAGATTGGTTCGAAAGCCAATGTAAATGGGAAATAAACAATGGTGACAACCTTTCTTTCTGGCATGGAAACTGGAATGATAAAAGTCCACTTTCAAGGACT
TATCTCAGATTATATGCCATCTCCCAGAGCCAAAAAGCAACTATAAATGAGAATTGGGATAGCATTAGAGGAGATTGGCTCATTGAACAAAGAAGATCCTTAAATGACAG
GGAAAAATTGTCATGGTGCAACATCAAAAGAACTATTCCAATTCCAAATCCAAATCCAAACAGAGGAAGCAGCAGGCTGAATTGGAGACTAAATGAAAACAATAGTTTCA
CGATAGCCAGTGTTAAGCAATCGTTGATCAGAAGCGCACAAAGAGAAGAACCAGTCGCAGGTAAACAAACTTTCAAATTCCTTTGGAAATCGACGGTTCCAAAAAAATAT
AAGTTCTTTACCTGGACAATCATCCATGAAAGTATCAATACTTTAGACGTTCTCTAG
Protein sequenceShow/hide protein sequence
MVNCKSSKERKGIGYLIDGRYKFARLCKWLWLYQTESNLLWKKIILAKYKGSNVDEIPTQGKYSSMNAPWRSIVKGIDWFESQCKWEINNGDNLSFWHGNWNDKSPLSRT
YLRLYAISQSQKATINENWDSIRGDWLIEQRRSLNDREKLSWCNIKRTIPIPNPNPNRGSSRLNWRLNENNSFTIASVKQSLIRSAQREEPVAGKQTFKFLWKSTVPKKY
KFFTWTIIHESINTLDVL