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PI0001628 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0001628
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionSerine/arginine-rich splicing factor SR30
Genome locationchr08:7998707..7999481
RNA-Seq ExpressionPI0001628
SyntenyPI0001628
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005829 - cytosol (cellular component)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050909.1 serine/arginine-rich splicing factor SR30 [Cucumis melo var. makuwa]2.7e-2989.04Show/hide
Query:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRGGVPRRIDYQVLVTGLPSSASWQDLK
        DV D EDAIYGRDGYKFDGCRL+VEFAHGGR HSS VDRYSRSGS+RGGVPRR DY+VLVTGLPSSASWQDLK
Subjt:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRGGVPRRIDYQVLVTGLPSSASWQDLK

XP_008450613.1 PREDICTED: serine/arginine-rich splicing factor SR30 [Cucumis melo]2.7e-2989.04Show/hide
Query:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRGGVPRRIDYQVLVTGLPSSASWQDLK
        DV D EDAIYGRDGYKFDGCRL+VEFAHGGR HSS VDRYSRSGS+RGGVPRR DY+VLVTGLPSSASWQDLK
Subjt:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRGGVPRRIDYQVLVTGLPSSASWQDLK

XP_011659888.1 serine/arginine-rich splicing factor SR30 isoform X1 [Cucumis sativus]2.7e-2989.04Show/hide
Query:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRGGVPRRIDYQVLVTGLPSSASWQDLK
        DV D EDAIYGRDGYKFDGCRL+VEFAHGGR HSS VDRYSRSGS+RGGVPRR DY+VLVTGLPSSASWQDLK
Subjt:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRGGVPRRIDYQVLVTGLPSSASWQDLK

XP_031736415.1 serine/arginine-rich splicing factor SR30 isoform X2 [Cucumis sativus]2.7e-2989.04Show/hide
Query:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRGGVPRRIDYQVLVTGLPSSASWQDLK
        DV D EDAIYGRDGYKFDGCRL+VEFAHGGR HSS VDRYSRSGS+RGGVPRR DY+VLVTGLPSSASWQDLK
Subjt:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRGGVPRRIDYQVLVTGLPSSASWQDLK

XP_038879705.1 serine/arginine-rich splicing factor SR30-like [Benincasa hispida]2.3e-2887.67Show/hide
Query:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRGGVPRRIDYQVLVTGLPSSASWQDLK
        DV D EDAIYGRDGYKFDGCRL+VEFAHGGR HSS VDRYSRSGS+RGGV RR DY+VLVTGLPSSASWQDLK
Subjt:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRGGVPRRIDYQVLVTGLPSSASWQDLK

TrEMBL top hitse value%identityAlignment
A0A0A0M1I3 Uncharacterized protein1.3e-2989.04Show/hide
Query:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRGGVPRRIDYQVLVTGLPSSASWQDLK
        DV D EDAIYGRDGYKFDGCRL+VEFAHGGR HSS VDRYSRSGS+RGGVPRR DY+VLVTGLPSSASWQDLK
Subjt:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRGGVPRRIDYQVLVTGLPSSASWQDLK

A0A1S3BPM4 serine/arginine-rich splicing factor SR301.3e-2989.04Show/hide
Query:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRGGVPRRIDYQVLVTGLPSSASWQDLK
        DV D EDAIYGRDGYKFDGCRL+VEFAHGGR HSS VDRYSRSGS+RGGVPRR DY+VLVTGLPSSASWQDLK
Subjt:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRGGVPRRIDYQVLVTGLPSSASWQDLK

A0A5A7UBJ3 Serine/arginine-rich splicing factor SR301.3e-2989.04Show/hide
Query:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRGGVPRRIDYQVLVTGLPSSASWQDLK
        DV D EDAIYGRDGYKFDGCRL+VEFAHGGR HSS VDRYSRSGS+RGGVPRR DY+VLVTGLPSSASWQDLK
Subjt:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRGGVPRRIDYQVLVTGLPSSASWQDLK

A0A6J1ESI8 serine/arginine-rich splicing factor SR30-like2.7e-2782.19Show/hide
Query:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRGGVPRRIDYQVLVTGLPSSASWQDLK
        D+ D EDAIYGRDGYKFDGCRL+VEFAHGGR HSS +D YSRSGS+RGGV RR DY+VLVTGLP SASWQDLK
Subjt:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRGGVPRRIDYQVLVTGLPSSASWQDLK

A0A6J1HYQ5 serine/arginine-rich splicing factor SR30-like2.1e-2783.56Show/hide
Query:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRGGVPRRIDYQVLVTGLPSSASWQDLK
        DV D EDAIYGRDGYKFDGCRL+VEFAHGGR HSS +D YSRSGS+RGGV RR DY+VLVTGLP SASWQDLK
Subjt:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRGGVPRRIDYQVLVTGLPSSASWQDLK

SwissProt top hitse value%identityAlignment
A2RVS6 Serine/arginine-rich splicing factor SR34A2.3e-1554.22Show/hide
Query:  DVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDR-------------YSRSGSTRGGVPRRIDYQVLVTGLPSSASWQDLK
        D EDAI GRDGY  DGCRL+VE AHGGR  SS   R                 GS R GV R  +++V+V GLPSSASWQDLK
Subjt:  DVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDR-------------YSRSGSTRGGVPRRIDYQVLVTGLPSSASWQDLK

F4JHI7 Serine/arginine-rich splicing factor SR34B1.0e-1556.47Show/hide
Query:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRG------------GVPRRIDYQVLVTGLPSSASWQDLK
        D  D +DAIYGRDGY FDG  L+VE AHGGR  SS   R S SG  RG            G  RR +Y+V+V+GLPSSASWQDLK
Subjt:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRG------------GVPRRIDYQVLVTGLPSSASWQDLK

O22315 Serine/arginine-rich-splicing factor SR344.6e-1658.33Show/hide
Query:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRG-----------GVPRRIDYQVLVTGLPSSASWQDLK
        D  D EDAI+GRDGY FDG RL+VE AHGGR  SS   R S +G  RG           G  RR +++VLVTGLPSSASWQDLK
Subjt:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRG-----------GVPRRIDYQVLVTGLPSSASWQDLK

Q5ZML3 Serine/arginine-rich splicing factor 11.1e-1252.63Show/hide
Query:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRG--GVP-RRIDYQVLVTGLPSSASWQDLK
        D  D EDA+YGRDGY +DG RL+VEF   GR            G+ RG  G P RR +Y+V+V+GLP S SWQDLK
Subjt:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRG--GVP-RRIDYQVLVTGLPSSASWQDLK

Q9XFR5 Serine/arginine-rich splicing factor SR301.3e-2169.86Show/hide
Query:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRGGVPRRIDYQVLVTGLPSSASWQDLK
        D  D +DAIYGRDGY FDGCRL+VE AHGGR  S  VDRYS S S      RR DY+VLVTGLP SASWQDLK
Subjt:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRGGVPRRIDYQVLVTGLPSSASWQDLK

Arabidopsis top hitse value%identityAlignment
AT1G02840.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.3e-1758.33Show/hide
Query:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRG-----------GVPRRIDYQVLVTGLPSSASWQDLK
        D  D EDAI+GRDGY FDG RL+VE AHGGR  SS   R S +G  RG           G  RR +++VLVTGLPSSASWQDLK
Subjt:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRG-----------GVPRRIDYQVLVTGLPSSASWQDLK

AT1G02840.2 RNA-binding (RRM/RBD/RNP motifs) family protein3.3e-1758.33Show/hide
Query:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRG-----------GVPRRIDYQVLVTGLPSSASWQDLK
        D  D EDAI+GRDGY FDG RL+VE AHGGR  SS   R S +G  RG           G  RR +++VLVTGLPSSASWQDLK
Subjt:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRG-----------GVPRRIDYQVLVTGLPSSASWQDLK

AT1G02840.3 RNA-binding (RRM/RBD/RNP motifs) family protein3.3e-1758.33Show/hide
Query:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRG-----------GVPRRIDYQVLVTGLPSSASWQDLK
        D  D EDAI+GRDGY FDG RL+VE AHGGR  SS   R S +G  RG           G  RR +++VLVTGLPSSASWQDLK
Subjt:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRG-----------GVPRRIDYQVLVTGLPSSASWQDLK

AT1G09140.1 SERINE-ARGININE PROTEIN 308.9e-2369.86Show/hide
Query:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRGGVPRRIDYQVLVTGLPSSASWQDLK
        D  D +DAIYGRDGY FDGCRL+VE AHGGR  S  VDRYS S S      RR DY+VLVTGLP SASWQDLK
Subjt:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRGGVPRRIDYQVLVTGLPSSASWQDLK

AT1G09140.2 SERINE-ARGININE PROTEIN 308.9e-2369.86Show/hide
Query:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRGGVPRRIDYQVLVTGLPSSASWQDLK
        D  D +DAIYGRDGY FDGCRL+VE AHGGR  S  VDRYS S S      RR DY+VLVTGLP SASWQDLK
Subjt:  DVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRGGVPRRIDYQVLVTGLPSSASWQDLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCATTGCAGATCTATCCTTTCCAACATCAGATCTGATGTTTGTGATGTTGAAGATGCAATTTACGGCCGAGATGGGTATAAGTTTGATGGATGTCGATTGCAAGT
GGAATTTGCGCATGGTGGAAGGGTACATTCTTCTTTCGTGGATCGTTACAGTCGTAGTGGAAGTACCCGTGGTGGTGTTCCTCGACGAATCGACTATCAAGTTTTAGTTA
CTGGATTACCTTCTTCTGCTTCATGGCAAGACCTGAAGCATCCTTGTCAATTAGAGATAACAAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAACCATTGCAGATCTATCCTTTCCAACATCAGATCTGATGTTTGTGATGTTGAAGATGCAATTTACGGCCGAGATGGGTATAAGTTTGATGGATGTCGATTGCAAGT
GGAATTTGCGCATGGTGGAAGGGTACATTCTTCTTTCGTGGATCGTTACAGTCGTAGTGGAAGTACCCGTGGTGGTGTTCCTCGACGAATCGACTATCAAGTTTTAGTTA
CTGGATTACCTTCTTCTGCTTCATGGCAAGACCTGAAGCATCCTTGTCAATTAGAGATAACAAATTAG
Protein sequenceShow/hide protein sequence
MNHCRSILSNIRSDVCDVEDAIYGRDGYKFDGCRLQVEFAHGGRVHSSFVDRYSRSGSTRGGVPRRIDYQVLVTGLPSSASWQDLKHPCQLEITN