; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0001647 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0001647
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr01:21062452..21062937
RNA-Seq ExpressionPI0001647
SyntenyPI0001647
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039476.1 uncharacterized protein E6C27_scaffold64G002900 [Cucumis melo var. makuwa]7.5e-3252.71Show/hide
Query:  DLEKKFEIKCLKALGAQEFSGTVDLQEAEKWIRTLEKCFWVMQCPEERRVDLVVFLLLEGAEDWWSLEEGR---SGEVSWTEFKEIFNKKYFPEAFRDGK
        D +KK+ I+ LKALGA  F+GT +  + E W+  +EKCF V +CPE+R+V+L  FLL  GAEDWW +EE R   +G++SW EFK+ F  K++P +FRD K
Subjt:  DLEKKFEIKCLKALGAQEFSGTVDLQEAEKWIRTLEKCFWVMQCPEERRVDLVVFLLLEGAEDWWSLEEGR---SGEVSWTEFKEIFNKKYFPEAFRDGK

Query:  RNEFLHLRQEDLSVAKYEKKFTSPTKYTT
        RNEFL L Q  ++VA+YEKK+T  +KY T
Subjt:  RNEFLHLRQEDLSVAKYEKKFTSPTKYTT

KAA0047616.1 uncharacterized protein E6C27_scaffold115G00890 [Cucumis melo var. makuwa]4.0e-3347.24Show/hide
Query:  EAQSINTYAWRAMEEELYDRVAQRMIDGL---ARDLEKKFEIKCLKALGAQEFSGTVDLQEAEKWIRTLEKCFWVMQCPEERRVDLVVFLLLEGAEDWWS
        +A+S   +    +EE+L DR+AQ ++ G+     +LEK F I+ LKALGA  F+GT +L +AE W+  +EKCF VM+C E+R+V+LVVFLL  G EDWW 
Subjt:  EAQSINTYAWRAMEEELYDRVAQRMIDGL---ARDLEKKFEIKCLKALGAQEFSGTVDLQEAEKWIRTLEKCFWVMQCPEERRVDLVVFLLLEGAEDWWS

Query:  LEEGR---SGEVSWTEFKEIFNKKYFPEAFRDGKRNEFLHLRQEDLSVAKYEKKFTSPTKYTT
        L E R   + ++SW EFK+ F +K++  +FRD KR++FL   Q  + V KYEKK+T  +KY T
Subjt:  LEEGR---SGEVSWTEFKEIFNKKYFPEAFRDGKRNEFLHLRQEDLSVAKYEKKFTSPTKYTT

KAA0060484.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa]4.4e-3252.71Show/hide
Query:  DLEKKFEIKCLKALGAQEFSGTVDLQEAEKWIRTLEKCFWVMQCPEERRVDLVVFLLLEGAEDWWSLEEGR---SGEVSWTEFKEIFNKKYFPEAFRDGK
        D EKK+ I+ LKALGA  F+GT +  +AE W+  +EKCF V +CPE+R+V+L  FLL  GAEDWW +EE R   +G++SW EFK+ F  K++P +FRD K
Subjt:  DLEKKFEIKCLKALGAQEFSGTVDLQEAEKWIRTLEKCFWVMQCPEERRVDLVVFLLLEGAEDWWSLEEGR---SGEVSWTEFKEIFNKKYFPEAFRDGK

Query:  RNEFLHLRQEDLSVAKYEKKFTSPTKYTT
        RNEFL L Q  +++A+YEKK+T  + Y T
Subjt:  RNEFLHLRQEDLSVAKYEKKFTSPTKYTT

TYJ95881.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]5.7e-3245.4Show/hide
Query:  EAQSINTYAWRAMEEELYDRVAQRMIDGL---ARDLEKKFEIKCLKALGAQEFSGTVDLQEAEKWIRTLEKCFWVMQCPEERRVDLVVFLLLEGAEDWWS
        +A+S        +EE+L DR+AQR++ G+     D EKK+  + LKALGA  F+GT +  + E W+  +EKCF V +  E+R+V+L  FLL   AEDWW 
Subjt:  EAQSINTYAWRAMEEELYDRVAQRMIDGL---ARDLEKKFEIKCLKALGAQEFSGTVDLQEAEKWIRTLEKCFWVMQCPEERRVDLVVFLLLEGAEDWWS

Query:  LEEGR---SGEVSWTEFKEIFNKKYFPEAFRDGKRNEFLHLRQEDLSVAKYEKKFTSPTKYTT
        +EE R   +G++SW EFK+ F  K++P +FRD K NEF+ L Q  ++VA+YEKK+T  +KY T
Subjt:  LEEGR---SGEVSWTEFKEIFNKKYFPEAFRDGKRNEFLHLRQEDLSVAKYEKKFTSPTKYTT

TYK15233.1 uncharacterized protein E5676_scaffold892G00030 [Cucumis melo var. makuwa]7.5e-3252.71Show/hide
Query:  DLEKKFEIKCLKALGAQEFSGTVDLQEAEKWIRTLEKCFWVMQCPEERRVDLVVFLLLEGAEDWWSLEEGR---SGEVSWTEFKEIFNKKYFPEAFRDGK
        D +KK+ I+ LKALGA  F+GT +  + E W+  +EKCF V +CPE+R+V+L  FLL  GAEDWW +EE R   +G++SW EFK+ F  K++P +FRD K
Subjt:  DLEKKFEIKCLKALGAQEFSGTVDLQEAEKWIRTLEKCFWVMQCPEERRVDLVVFLLLEGAEDWWSLEEGR---SGEVSWTEFKEIFNKKYFPEAFRDGK

Query:  RNEFLHLRQEDLSVAKYEKKFTSPTKYTT
        RNEFL L Q  ++VA+YEKK+T  +KY T
Subjt:  RNEFLHLRQEDLSVAKYEKKFTSPTKYTT

TrEMBL top hitse value%identityAlignment
A0A5A7TBS0 CCHC-type domain-containing protein3.6e-3252.71Show/hide
Query:  DLEKKFEIKCLKALGAQEFSGTVDLQEAEKWIRTLEKCFWVMQCPEERRVDLVVFLLLEGAEDWWSLEEGR---SGEVSWTEFKEIFNKKYFPEAFRDGK
        D +KK+ I+ LKALGA  F+GT +  + E W+  +EKCF V +CPE+R+V+L  FLL  GAEDWW +EE R   +G++SW EFK+ F  K++P +FRD K
Subjt:  DLEKKFEIKCLKALGAQEFSGTVDLQEAEKWIRTLEKCFWVMQCPEERRVDLVVFLLLEGAEDWWSLEEGR---SGEVSWTEFKEIFNKKYFPEAFRDGK

Query:  RNEFLHLRQEDLSVAKYEKKFTSPTKYTT
        RNEFL L Q  ++VA+YEKK+T  +KY T
Subjt:  RNEFLHLRQEDLSVAKYEKKFTSPTKYTT

A0A5A7U067 Retrotrans_gag domain-containing protein1.9e-3347.24Show/hide
Query:  EAQSINTYAWRAMEEELYDRVAQRMIDGL---ARDLEKKFEIKCLKALGAQEFSGTVDLQEAEKWIRTLEKCFWVMQCPEERRVDLVVFLLLEGAEDWWS
        +A+S   +    +EE+L DR+AQ ++ G+     +LEK F I+ LKALGA  F+GT +L +AE W+  +EKCF VM+C E+R+V+LVVFLL  G EDWW 
Subjt:  EAQSINTYAWRAMEEELYDRVAQRMIDGL---ARDLEKKFEIKCLKALGAQEFSGTVDLQEAEKWIRTLEKCFWVMQCPEERRVDLVVFLLLEGAEDWWS

Query:  LEEGR---SGEVSWTEFKEIFNKKYFPEAFRDGKRNEFLHLRQEDLSVAKYEKKFTSPTKYTT
        L E R   + ++SW EFK+ F +K++  +FRD KR++FL   Q  + V KYEKK+T  +KY T
Subjt:  LEEGR---SGEVSWTEFKEIFNKKYFPEAFRDGKRNEFLHLRQEDLSVAKYEKKFTSPTKYTT

A0A5A7UZM6 Gag protease polyprotein-like protein2.1e-3252.71Show/hide
Query:  DLEKKFEIKCLKALGAQEFSGTVDLQEAEKWIRTLEKCFWVMQCPEERRVDLVVFLLLEGAEDWWSLEEGR---SGEVSWTEFKEIFNKKYFPEAFRDGK
        D EKK+ I+ LKALGA  F+GT +  +AE W+  +EKCF V +CPE+R+V+L  FLL  GAEDWW +EE R   +G++SW EFK+ F  K++P +FRD K
Subjt:  DLEKKFEIKCLKALGAQEFSGTVDLQEAEKWIRTLEKCFWVMQCPEERRVDLVVFLLLEGAEDWWSLEEGR---SGEVSWTEFKEIFNKKYFPEAFRDGK

Query:  RNEFLHLRQEDLSVAKYEKKFTSPTKYTT
        RNEFL L Q  +++A+YEKK+T  + Y T
Subjt:  RNEFLHLRQEDLSVAKYEKKFTSPTKYTT

A0A5D3BB91 Reverse transcriptase2.8e-3245.4Show/hide
Query:  EAQSINTYAWRAMEEELYDRVAQRMIDGL---ARDLEKKFEIKCLKALGAQEFSGTVDLQEAEKWIRTLEKCFWVMQCPEERRVDLVVFLLLEGAEDWWS
        +A+S        +EE+L DR+AQR++ G+     D EKK+  + LKALGA  F+GT +  + E W+  +EKCF V +  E+R+V+L  FLL   AEDWW 
Subjt:  EAQSINTYAWRAMEEELYDRVAQRMIDGL---ARDLEKKFEIKCLKALGAQEFSGTVDLQEAEKWIRTLEKCFWVMQCPEERRVDLVVFLLLEGAEDWWS

Query:  LEEGR---SGEVSWTEFKEIFNKKYFPEAFRDGKRNEFLHLRQEDLSVAKYEKKFTSPTKYTT
        +EE R   +G++SW EFK+ F  K++P +FRD K NEF+ L Q  ++VA+YEKK+T  +KY T
Subjt:  LEEGR---SGEVSWTEFKEIFNKKYFPEAFRDGKRNEFLHLRQEDLSVAKYEKKFTSPTKYTT

A0A5D3CTK6 CCHC-type domain-containing protein3.6e-3252.71Show/hide
Query:  DLEKKFEIKCLKALGAQEFSGTVDLQEAEKWIRTLEKCFWVMQCPEERRVDLVVFLLLEGAEDWWSLEEGR---SGEVSWTEFKEIFNKKYFPEAFRDGK
        D +KK+ I+ LKALGA  F+GT +  + E W+  +EKCF V +CPE+R+V+L  FLL  GAEDWW +EE R   +G++SW EFK+ F  K++P +FRD K
Subjt:  DLEKKFEIKCLKALGAQEFSGTVDLQEAEKWIRTLEKCFWVMQCPEERRVDLVVFLLLEGAEDWWSLEEGR---SGEVSWTEFKEIFNKKYFPEAFRDGK

Query:  RNEFLHLRQEDLSVAKYEKKFTSPTKYTT
        RNEFL L Q  ++VA+YEKK+T  +KY T
Subjt:  RNEFLHLRQEDLSVAKYEKKFTSPTKYTT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAATTTTGAGGCTCAATCAATAAATACGTACGCATGGCGAGCTATGGAAGAAGAGTTGTATGACCGAGTTGCTCAACGAATGATAGATGGTTTGGCGAGAGACCT
AGAGAAGAAATTTGAAATTAAGTGTCTTAAGGCATTAGGAGCTCAAGAGTTCTCAGGAACTGTAGATCTGCAGGAGGCGGAGAAGTGGATAAGAACACTTGAAAAGTGTT
TCTGGGTTATGCAATGTCCAGAAGAAAGAAGGGTGGACTTGGTCGTTTTCCTACTTCTAGAAGGTGCGGAAGACTGGTGGTCTTTGGAAGAAGGAAGGAGTGGAGAAGTG
AGTTGGACTGAGTTCAAGGAAATTTTCAATAAGAAGTATTTTCCCGAGGCATTTAGAGATGGGAAGCGAAATGAATTTTTGCATTTAAGGCAAGAAGATTTGTCCGTAGC
TAAGTATGAGAAGAAGTTCACGAGTCCGACAAAGTATACGACATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATAATTTTGAGGCTCAATCAATAAATACGTACGCATGGCGAGCTATGGAAGAAGAGTTGTATGACCGAGTTGCTCAACGAATGATAGATGGTTTGGCGAGAGACCT
AGAGAAGAAATTTGAAATTAAGTGTCTTAAGGCATTAGGAGCTCAAGAGTTCTCAGGAACTGTAGATCTGCAGGAGGCGGAGAAGTGGATAAGAACACTTGAAAAGTGTT
TCTGGGTTATGCAATGTCCAGAAGAAAGAAGGGTGGACTTGGTCGTTTTCCTACTTCTAGAAGGTGCGGAAGACTGGTGGTCTTTGGAAGAAGGAAGGAGTGGAGAAGTG
AGTTGGACTGAGTTCAAGGAAATTTTCAATAAGAAGTATTTTCCCGAGGCATTTAGAGATGGGAAGCGAAATGAATTTTTGCATTTAAGGCAAGAAGATTTGTCCGTAGC
TAAGTATGAGAAGAAGTTCACGAGTCCGACAAAGTATACGACATGA
Protein sequenceShow/hide protein sequence
MDNFEAQSINTYAWRAMEEELYDRVAQRMIDGLARDLEKKFEIKCLKALGAQEFSGTVDLQEAEKWIRTLEKCFWVMQCPEERRVDLVVFLLLEGAEDWWSLEEGRSGEV
SWTEFKEIFNKKYFPEAFRDGKRNEFLHLRQEDLSVAKYEKKFTSPTKYTT