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PI0001664 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0001664
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr03:22357485..22360804
RNA-Seq ExpressionPI0001664
SyntenyPI0001664
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032130.1 gag/pol protein [Cucumis melo var. makuwa]1.7e-6266.83Show/hide
Query:  MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMMMHFNIA---------------------------ETNASLN
        MSDVLAKKHE LA  K IMDSL+EM GQ S+SLRHEAIKYIYTK+MKEGTS+ EHV+DM++HFNIA                           +TN SL+
Subjt:  MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMMMHFNIA---------------------------ETNASLN

Query:  KIEFTLTILLNELQRFQNHTMGKGKKVEANVATTKKGFMRGSSSKTKVGPLQMKNKGKGKTPKNCKGKKIVKGKCYHCNQNGHWLRNCPKYLAEKKAEKE
        KIEFTLT LLNELQRFQN T+GKGK+VEANVAT +K  +RGSSSK++VGP  MKNK KGKTPKN KGKK+ KGK YH N++GHWLRNC KYLAEKKAE E
Subjt:  KIEFTLTILLNELQRFQNHTMGKGKKVEANVATTKKGFMRGSSSKTKVGPLQMKNKGKGKTPKNCKGKKIVKGKCYHCNQNGHWLRNCPKYLAEKKAEKE

Query:  AQ
        AQ
Subjt:  AQ

KAA0035261.1 gag/pol protein [Cucumis melo var. makuwa]1.7e-6267Show/hide
Query:  MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMMMHFNIAET---------------------------NASLN
        MSDVLAKKHE LA  K IMDSL EM GQ S+SLRH+AIKYIYTK+MKEGTS+ EHVLDMMMHFNIAE                            NASLN
Subjt:  MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMMMHFNIAET---------------------------NASLN

Query:  KIEFTLTILLNELQRFQNHTMGKGKKVEANVATTKKGFMRGSSSKTKVGPLQMKNKGKGKTPKNCKGKKIVKGKCYHCNQNGHWLRNCPKYLAEKKAEKE
        KI+FTLT LLNELQ+FQN TM KGK+VEANVAT++K  + GSSSKTKVGP  MK   KGKTPKN K KK+VKGKCYHCN++ +WLRNCPKYL EKK E+E
Subjt:  KIEFTLTILLNELQRFQNHTMGKGKKVEANVATTKKGFMRGSSSKTKVGPLQMKNKGKGKTPKNCKGKKIVKGKCYHCNQNGHWLRNCPKYLAEKKAEKE

Query:  AQE
        AQE
Subjt:  AQE

KAA0040307.1 gag/pol protein [Cucumis melo var. makuwa]3.5e-6368.6Show/hide
Query:  MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMMMHFNIAE---------------------------TNASLN
        MSDVLAKKHE LAT K IMDSLK M GQ  + LRHEAIKYIYTKRMKEGTS+ EHVLDMMMHFNIAE                           TNASLN
Subjt:  MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMMMHFNIAE---------------------------TNASLN

Query:  KIEFTLTILLNELQRFQNHTMGKGKKVEANVATTKKGFMRGSSSKTKVGPL----QMKNKGKGKTPKNCKGKK-IVKGKCYHCNQNGHWLRNCPKYLAEK
        KIEF LT LLNELQRFQN T GKGK+VE NVATTK  F RGSSSK+K GPL    +++ KGKGKTPK  KGKK I KGKCYHC +NGHWL+NCPKYLA+K
Subjt:  KIEFTLTILLNELQRFQNHTMGKGKKVEANVATTKKGFMRGSSSKTKVGPL----QMKNKGKGKTPKNCKGKK-IVKGKCYHCNQNGHWLRNCPKYLAEK

Query:  KAEKEAQ
        KAEKEAQ
Subjt:  KAEKEAQ

KAA0041767.1 gag/pol protein [Cucumis melo var. makuwa]2.7e-6878.86Show/hide
Query:  MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMMMHFNIAETNASLNKIEFTLTILLNELQRFQNHTMGKGKKV
        MSDVLAKKHE LATTK IMDSL+EM  Q S+SLRHEAIKYIYTK+MKEGTS+ EHVLDMMMHFNIAETNA  NKIEFTLT LLNELQRFQN TMGKG  +
Subjt:  MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMMMHFNIAETNASLNKIEFTLTILLNELQRFQNHTMGKGKKV

Query:  EANVATTKKGFMRGSSSKTKVGPLQMKNKGKGKTPKNCKGKKIVKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQ
        EANVATT+K  + GSS  T+V  L MK K KGKTPKN +GKK+ KGKCYHCN++GHWLRNCPKY AEKKAEKEAQ
Subjt:  EANVATTKKGFMRGSSSKTKVGPLQMKNKGKGKTPKNCKGKKIVKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQ

KAA0060200.1 gag/pol protein [Cucumis melo var. makuwa]8.5e-6274.85Show/hide
Query:  MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMMMHFNIAETNASLNKIEFTLTILLNELQRFQNHTMGKGKKV
        MSDVLAKKHE LAT K IMDSL+EM GQ S+SLRH+AIKYIYTK+MKEGTS+ EHVLDMMMHFNIAE N      EFTLT LLNELQRF N T+GKGK+V
Subjt:  MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMMMHFNIAETNASLNKIEFTLTILLNELQRFQNHTMGKGKKV

Query:  EANVATTKKGFMRGSSSKTKVGPLQMKNKGKGKTPKNCKGKKIVKGKCYHCNQNGHWLRNCPKYLAEKKAE
        EANVAT +K  MRGSSSKT+ GP  MK K KGKTPKN KGKK+ KGKCYHCN++GHWLRN  KYLA+KK +
Subjt:  EANVATTKKGFMRGSSSKTKVGPLQMKNKGKGKTPKNCKGKKIVKGKCYHCNQNGHWLRNCPKYLAEKKAE

TrEMBL top hitse value%identityAlignment
A0A5A7TFI0 Gag/pol protein1.7e-6368.6Show/hide
Query:  MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMMMHFNIAE---------------------------TNASLN
        MSDVLAKKHE LAT K IMDSLK M GQ  + LRHEAIKYIYTKRMKEGTS+ EHVLDMMMHFNIAE                           TNASLN
Subjt:  MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMMMHFNIAE---------------------------TNASLN

Query:  KIEFTLTILLNELQRFQNHTMGKGKKVEANVATTKKGFMRGSSSKTKVGPL----QMKNKGKGKTPKNCKGKK-IVKGKCYHCNQNGHWLRNCPKYLAEK
        KIEF LT LLNELQRFQN T GKGK+VE NVATTK  F RGSSSK+K GPL    +++ KGKGKTPK  KGKK I KGKCYHC +NGHWL+NCPKYLA+K
Subjt:  KIEFTLTILLNELQRFQNHTMGKGKKVEANVATTKKGFMRGSSSKTKVGPL----QMKNKGKGKTPKNCKGKK-IVKGKCYHCNQNGHWLRNCPKYLAEK

Query:  KAEKEAQ
        KAEKEAQ
Subjt:  KAEKEAQ

A0A5D3B6U9 Gag/pol protein4.1e-6274.85Show/hide
Query:  MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMMMHFNIAETNASLNKIEFTLTILLNELQRFQNHTMGKGKKV
        MSDVLAKKHE LAT K IMDSL+EM GQ S+SLRH+AIKYIYTK+MKEGTS+ EHVLDMMMHFNIAE N      EFTLT LLNELQRF N T+GKGK+V
Subjt:  MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMMMHFNIAETNASLNKIEFTLTILLNELQRFQNHTMGKGKKV

Query:  EANVATTKKGFMRGSSSKTKVGPLQMKNKGKGKTPKNCKGKKIVKGKCYHCNQNGHWLRNCPKYLAEKKAE
        EANVAT +K  MRGSSSKT+ GP  MK K KGKTPKN KGKK+ KGKCYHCN++GHWLRN  KYLA+KK +
Subjt:  EANVATTKKGFMRGSSSKTKVGPLQMKNKGKGKTPKNCKGKKIVKGKCYHCNQNGHWLRNCPKYLAEKKAE

A0A5D3C8J9 Gag/pol protein8.3e-6367Show/hide
Query:  MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMMMHFNIAET---------------------------NASLN
        MSDVLAKKHE LA  K IMDSL EM GQ S+SLRH+AIKYIYTK+MKEGTS+ EHVLDMMMHFNIAE                            NASLN
Subjt:  MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMMMHFNIAET---------------------------NASLN

Query:  KIEFTLTILLNELQRFQNHTMGKGKKVEANVATTKKGFMRGSSSKTKVGPLQMKNKGKGKTPKNCKGKKIVKGKCYHCNQNGHWLRNCPKYLAEKKAEKE
        KI+FTLT LLNELQ+FQN TM KGK+VEANVAT++K  + GSSSKTKVGP  MK   KGKTPKN K KK+VKGKCYHCN++ +WLRNCPKYL EKK E+E
Subjt:  KIEFTLTILLNELQRFQNHTMGKGKKVEANVATTKKGFMRGSSSKTKVGPLQMKNKGKGKTPKNCKGKKIVKGKCYHCNQNGHWLRNCPKYLAEKKAEKE

Query:  AQE
        AQE
Subjt:  AQE

A0A5D3CSI7 Gag/pol protein8.3e-6366.83Show/hide
Query:  MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMMMHFNIA---------------------------ETNASLN
        MSDVLAKKHE LA  K IMDSL+EM GQ S+SLRHEAIKYIYTK+MKEGTS+ EHV+DM++HFNIA                           +TN SL+
Subjt:  MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMMMHFNIA---------------------------ETNASLN

Query:  KIEFTLTILLNELQRFQNHTMGKGKKVEANVATTKKGFMRGSSSKTKVGPLQMKNKGKGKTPKNCKGKKIVKGKCYHCNQNGHWLRNCPKYLAEKKAEKE
        KIEFTLT LLNELQRFQN T+GKGK+VEANVAT +K  +RGSSSK++VGP  MKNK KGKTPKN KGKK+ KGK YH N++GHWLRNC KYLAEKKAE E
Subjt:  KIEFTLTILLNELQRFQNHTMGKGKKVEANVATTKKGFMRGSSSKTKVGPLQMKNKGKGKTPKNCKGKKIVKGKCYHCNQNGHWLRNCPKYLAEKKAEKE

Query:  AQ
        AQ
Subjt:  AQ

A0A5D3DTN5 Gag/pol protein1.3e-6878.86Show/hide
Query:  MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMMMHFNIAETNASLNKIEFTLTILLNELQRFQNHTMGKGKKV
        MSDVLAKKHE LATTK IMDSL+EM  Q S+SLRHEAIKYIYTK+MKEGTS+ EHVLDMMMHFNIAETNA  NKIEFTLT LLNELQRFQN TMGKG  +
Subjt:  MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMMMHFNIAETNASLNKIEFTLTILLNELQRFQNHTMGKGKKV

Query:  EANVATTKKGFMRGSSSKTKVGPLQMKNKGKGKTPKNCKGKKIVKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQ
        EANVATT+K  + GSS  T+V  L MK K KGKTPKN +GKK+ KGKCYHCN++GHWLRNCPKY AEKKAEKEAQ
Subjt:  EANVATTKKGFMRGSSSKTKVGPLQMKNKGKGKTPKNCKGKKIVKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCGATGTTTTGGCAAAGAAACATGAATTCTTAGCCACGACTAAAGCGATTATGGATTCATTAAAGGAGATGTTAGGGCAACTGTCATACTCCCTAAGACACGAAGC
AATAAAATATATTTACACAAAGCGAATGAAGGAAGGGACCTCTATTACAGAACATGTTTTGGACATGATGATGCATTTCAATATTGCCGAAACAAACGCTTCTCTGAATA
AGATAGAGTTCACTTTGACCATCCTTCTGAATGAGCTCCAGCGTTTTCAGAACCATACCATGGGTAAAGGGAAAAAAGTGGAAGCAAATGTTGCTACCACAAAGAAAGGG
TTTATGAGAGGATCGTCCTCTAAAACTAAAGTTGGGCCTTTACAAATGAAAAATAAGGGAAAGGGGAAGACTCCTAAGAATTGTAAGGGAAAGAAAATTGTAAAAGGTAA
ATGTTACCACTGCAACCAAAACGGTCATTGGTTAAGGAATTGCCCAAAGTACCTTGCTGAAAAGAAAGCTGAGAAGGAAGCACAAGAGGTGAGAGCAACTCATCAGCGTT
GGCCCAATAAGCCTCCCATTTCAAGGGTAAGACTGGATGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCGATGTTTTGGCAAAGAAACATGAATTCTTAGCCACGACTAAAGCGATTATGGATTCATTAAAGGAGATGTTAGGGCAACTGTCATACTCCCTAAGACACGAAGC
AATAAAATATATTTACACAAAGCGAATGAAGGAAGGGACCTCTATTACAGAACATGTTTTGGACATGATGATGCATTTCAATATTGCCGAAACAAACGCTTCTCTGAATA
AGATAGAGTTCACTTTGACCATCCTTCTGAATGAGCTCCAGCGTTTTCAGAACCATACCATGGGTAAAGGGAAAAAAGTGGAAGCAAATGTTGCTACCACAAAGAAAGGG
TTTATGAGAGGATCGTCCTCTAAAACTAAAGTTGGGCCTTTACAAATGAAAAATAAGGGAAAGGGGAAGACTCCTAAGAATTGTAAGGGAAAGAAAATTGTAAAAGGTAA
ATGTTACCACTGCAACCAAAACGGTCATTGGTTAAGGAATTGCCCAAAGTACCTTGCTGAAAAGAAAGCTGAGAAGGAAGCACAAGAGGTGAGAGCAACTCATCAGCGTT
GGCCCAATAAGCCTCCCATTTCAAGGGTAAGACTGGATGGATAG
Protein sequenceShow/hide protein sequence
MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMMMHFNIAETNASLNKIEFTLTILLNELQRFQNHTMGKGKKVEANVATTKKG
FMRGSSSKTKVGPLQMKNKGKGKTPKNCKGKKIVKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQEVRATHQRWPNKPPISRVRLDG