CuGenDBv2

Gene ID	PI0001665
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Gag/pol protein
Genome location	chr09:14536226..14537134
RNA-Seq Expression	PI0001665
Synteny	PI0001665
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

4.3e-73

73.52

Show/hide

Query:  MEECPPSPIRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E  SVREHVL+MMV F
Subjt:  MEECPPSPIRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF

Query:  NVAETNGAIIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGAKKIQKKK
        NVAE NGA+IDE SQVSFILESL +SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNGAIIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGAKKIQKKK

Query:  GGKG-KGPAVAAKSKGKAK
        GG+G K    AAK+  KAK
Subjt:  GGKG-KGPAVAAKSKGKAK

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

4.3e-73

73.52

Show/hide

Query:  MEECPPSPIRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E  SVREHVL+MMV F
Subjt:  MEECPPSPIRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF

Query:  NVAETNGAIIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGAKKIQKKK
        NVAE NGA+IDE SQVSFILESL +SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNGAIIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGAKKIQKKK

Query:  GGKG-KGPAVAAKSKGKAK
        GG+G K    AAK+  KAK
Subjt:  GGKG-KGPAVAAKSKGKAK

KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa]

4.3e-73

73.52

Show/hide

Query:  MEECPPSPIRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E  SVREHVL+MMV F
Subjt:  MEECPPSPIRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF

Query:  NVAETNGAIIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGAKKIQKKK
        NVAE NGA+IDE SQVSFILESL +SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNGAIIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGAKKIQKKK

Query:  GGKG-KGPAVAAKSKGKAK
        GG+G K    AAK+  KAK
Subjt:  GGKG-KGPAVAAKSKGKAK

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

4.3e-73

73.52

Show/hide

Query:  MEECPPSPIRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E  SVREHVL+MMV F
Subjt:  MEECPPSPIRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF

Query:  NVAETNGAIIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGAKKIQKKK
        NVAE NGA+IDE SQVSFILESL +SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNGAIIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGAKKIQKKK

Query:  GGKG-KGPAVAAKSKGKAK
        GG+G K    AAK+  KAK
Subjt:  GGKG-KGPAVAAKSKGKAK

KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]

4.3e-73

73.52

Show/hide

Query:  MEECPPSPIRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF
        +EECP  P  NA+QTVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E  SVREHVL++MV F
Subjt:  MEECPPSPIRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF

Query:  NVAETNGAIIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGAKKIQKKK
        NVAE NGA+IDE SQVSFILESL +SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNGAIIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGAKKIQKKK

Query:  GGKG-KGPAVAAKSKGKAK
        GG+G K    AAK+  KAK
Subjt:  GGKG-KGPAVAAKSKGKAK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

2.1e-73

73.52

Show/hide

Query:  MEECPPSPIRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E  SVREHVL+MMV F
Subjt:  MEECPPSPIRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF

Query:  NVAETNGAIIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGAKKIQKKK
        NVAE NGA+IDE SQVSFILESL +SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNGAIIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGAKKIQKKK

Query:  GGKG-KGPAVAAKSKGKAK
        GG+G K    AAK+  KAK
Subjt:  GGKG-KGPAVAAKSKGKAK

A0A5A7TU93 Gag/pol protein

2.1e-73

73.52

Show/hide

Query:  MEECPPSPIRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E  SVREHVL+MMV F
Subjt:  MEECPPSPIRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF

Query:  NVAETNGAIIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGAKKIQKKK
        NVAE NGA+IDE SQVSFILESL +SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNGAIIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGAKKIQKKK

Query:  GGKG-KGPAVAAKSKGKAK
        GG+G K    AAK+  KAK
Subjt:  GGKG-KGPAVAAKSKGKAK

A0A5A7TWB9 Gag/pol protein

2.1e-73

73.52

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Query:  MEECPPSPIRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E  SVREHVL+MMV F
Subjt:  MEECPPSPIRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF

Query:  NVAETNGAIIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGAKKIQKKK
        NVAE NGA+IDE SQVSFILESL +SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNGAIIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGAKKIQKKK

Query:  GGKG-KGPAVAAKSKGKAK
        GG+G K    AAK+  KAK
Subjt:  GGKG-KGPAVAAKSKGKAK

A0A5A7U869 Gag/pol protein

2.1e-73

73.52

Show/hide

Query:  MEECPPSPIRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E  SVREHVL+MMV F
Subjt:  MEECPPSPIRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF

Query:  NVAETNGAIIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGAKKIQKKK
        NVAE NGA+IDE SQVSFILESL +SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNGAIIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGAKKIQKKK

Query:  GGKG-KGPAVAAKSKGKAK
        GG+G K    AAK+  KAK
Subjt:  GGKG-KGPAVAAKSKGKAK

A0A5A7V6N0 Gag/pol protein

2.1e-73

73.52

Show/hide

Query:  MEECPPSPIRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF
        +EECP  P  NA+QTVR+ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E  SVREHVL++MV F
Subjt:  MEECPPSPIRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF

Query:  NVAETNGAIIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGAKKIQKKK
        NVAE NGA+IDE SQVSFILESL +SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNGAIIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGAKKIQKKK

Query:  GGKG-KGPAVAAKSKGKAK
        GG+G K    AAK+  KAK
Subjt:  GGKG-KGPAVAAKSKGKAK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAGGAATGTCCTCCTTCCCCTATTCGAAATGCATCCCAGACCGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAG
TATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCATGAGG
CTATTAAATACGTTTATAATGCCCGTATGAAGGAAGACCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGATCATT
GACGAGCAAAGTCAGGTATCTTTTATCTTAGAATCTCTTTCGAAGAGCTTCCTTCAATTTCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACTCTCCT
TAACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCA
AGTCTGCACCTTCATCTTCTGGGGCTAAGAAAATCCAGAAGAAGAAAGGAGGAAAGGGGAAAGGTCCTGCTGTTGCTGCTAAGAGCAAGGGGAAGGCTAAGGATAATGTG
CAAAGCCCCTACACAAGCCCTTATGCACAAAAGTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MEECPPSPIRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAETNGAII
DEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGAKKIQKKKGGKGKGPAVAAKSKGKAKDNV
QSPYTSPYAQK

PI0001665 (gene) of Melon (PI 482460) v1 genome