CuGenDBv2

Gene ID	PI0001685
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Ribosomal protein S12
Genome location	tig00003624:649601..649978
RNA-Seq Expression	PI0001685
Synteny	PI0001685
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005739 - mitochondrion (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR005679 - Ribosomal protein S12, bacterial-type IPR006032 - Ribosomal protein S12/S23 IPR012340 - Nucleic acid-binding, OB-fold

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AEN56124.1 ribosomal protein S12 [Cucumis melo subsp. melo]

6.4e-63

98.4

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT NQLIRHGREEKRRTDRTRASDQCPQKQGVRPRL+TRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

QNJ89401.1 ribosomal protein S12 [Oenanthe virgata]

8.3e-63

98.4

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPR+ TRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

XP_023545340.1 uncharacterized protein LOC111804778 [Cucurbita pepo subsp. pepo]

9.8e-64

100

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

YP_004849331.1 ribosomal protein S12 [Cucumis sativus]

2.2e-63

99.2

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRL+TRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

YP_009709935.1 ribosomal protein S12 [Manihot esculenta]

2.2e-63

99.2

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPR+STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

TrEMBL top hits

e value

%identity

Alignment

A0A5J6Y1K8 Ribosomal protein S12

1.1e-63

99.2

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPR+STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

A0A7D6BYE6 Ribosomal protein S12

1.1e-63

99.2

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPR+STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

G3EIY3 Ribosomal protein S12

1.1e-63

99.2

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRL+TRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

G3EU39 Ribosomal protein S12

3.1e-63

98.4

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT NQLIRHGREEKRRTDRTRASDQCPQKQGVRPRL+TRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

W6JLR7 Ribosomal protein S12

1.1e-63

99.2

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPR+STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

SwissProt top hits

e value

%identity

Alignment

P27070 Ribosomal protein S12, mitochondrial

4.6e-64

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPR+ TRTPKKPNSAPRKIAKVRL+NRHDIF HIPGEGHN QEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

P60096 Ribosomal protein S12, mitochondrial

4.3e-62

94.4

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPR+ TRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHN QEH MVLIRGGRVKDSPGVKSH IRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIP+RRRGRSKYGAE+PKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

P68535 Ribosomal protein S12, mitochondrial

3.5e-64

96.8

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MP+LNQLIRHGREEKRRTDRTRA DQCPQKQGV PR+STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

P68536 Ribosomal protein S12, mitochondrial

3.5e-64

96.8

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MP+LNQLIRHGREEKRRTDRTRA DQCPQKQGV PR+STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

Q95869 Ribosomal protein S12, mitochondrial

1.5e-62

95.2

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT NQLIRHGREEKRRTDRTRA DQCPQKQGV PR+STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHN QEHSMVLIRGGRVKDSPGVK HCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

Arabidopsis top hits

e value

%identity

Alignment

AT2G07675.1 Ribosomal protein S12/S23 family protein

9.8e-62

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT NQLIRHGREEKRRTDRTRA D+CPQK GV PR+STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHN QEHS VLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDL+GIP RRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

ATCG00065.1 ribosomal protein S12A

7.8e-35

57.72

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT+ QLIR+ R+  R   ++ A   CPQ++G   R+ T TPKKPNSA RK+A+VRL++  +I A+IPG GHNLQEHS+VL+RGGRVKD PGV+ H +RG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
          D +G+ DR++GRSKYG +KPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

ATCG00905.1 ribosomal protein S12C

7.8e-35

57.72

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT+ QLIR+ R+  R   ++ A   CPQ++G   R+ T TPKKPNSA RK+A+VRL++  +I A+IPG GHNLQEHS+VL+RGGRVKD PGV+ H +RG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
          D +G+ DR++GRSKYG +KPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

ATCG01230.1 ribosomal protein S12B

7.8e-35

57.72

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT+ QLIR+ R+  R   ++ A   CPQ++G   R+ T TPKKPNSA RK+A+VRL++  +I A+IPG GHNLQEHS+VL+RGGRVKD PGV+ H +RG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
          D +G+ DR++GRSKYG +KPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

ATMG00980.1 Ribosomal protein S12/S23 family protein

9.8e-62

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT NQLIRHGREEKRRTDRTRA D+CPQK GV PR+STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHN QEHS VLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDL+GIP RRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

Sequences

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CDS sequence

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ATGCCTACATTAAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGTACGAGAGCTTCGGATCAATGTCCCCAGAAGCAAGGAGTACGCCCGCGTCT
TTCAACGAGAACACCGAAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGGTTGAGCAATCGACATGATATATTTGCTCACATTCCGGGCGAAGGTCATAATT
TGCAGGAACATTCTATGGTCTTAATAAGAGGAGGTAGAGTGAAAGATTCGCCAGGTGTGAAATCCCATTGTATTCGAGGAGTCAAGGATTTGCTGGGAATTCCGGATCGA
AGAAGAGGCAGATCTAAATATGGTGCAGAAAAACCAAAATCGATATGA

mRNA sequence

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Protein sequence

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MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDR
RRGRSKYGAEKPKSI

PI0001685 (gene) of Melon (PI 482460) v1 genome