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PI0001727 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0001727
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRibonuclease H
Genome locationchr11:12997257..12999819
RNA-Seq ExpressionPI0001727
SyntenyPI0001727
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052361.1 uncharacterized protein E6C27_scaffold207G002040 [Cucumis melo var. makuwa]2.7e-3964.33Show/hide
Query:  MAKAGYDFTTRTRFKS-KIFDERHGFSPTQTKLQKQGYFIPNSRPGLWYKSSEPVRITGKGKAKATDTCHITVEECNDSKEDKKNESQRSSVFYHITSST
        MAKAGYDFTTRT  KS KI DER  FSPTQ KLQKQGY IPNSR G+ Y+SSEPVRITGKGKAK  +TCHITVEE  DS+E KK+ SQRSSVF  I  S 
Subjt:  MAKAGYDFTTRTRFKS-KIFDERHGFSPTQTKLQKQGYFIPNSRPGLWYKSSEPVRITGKGKAKATDTCHITVEECNDSKEDKKNESQRSSVFYHITSST

Query:  ARSSVFQRLSALTREDKNEGSASESTQLSAFQRLNT----------TSVMRTSTFKR
         R SVFQR+S    +D N+ S   ST+LSAFQRLNT          T   R S FKR
Subjt:  ARSSVFQRLSALTREDKNEGSASESTQLSAFQRLNT----------TSVMRTSTFKR

KAA0053731.1 uncharacterized protein E6C27_scaffold135G001080 [Cucumis melo var. makuwa]7.8e-3952.94Show/hide
Query:  MAKAGYDFTTRTRFKS-KIFDERHGFSPTQTKLQKQGYFIPNSRPGLWYKSSEPVRITGKGKAKATDTCHITVEECNDSKEDKKNESQRSSVFYHITSST
        MAKAGYDFTTRT  KS KIFDER   SPTQTKLQKQGY IPNSR G+ Y+SSEPVRITGKGK K  +TCHITVEE  DSKE KK+ SQRSSVF  I  S 
Subjt:  MAKAGYDFTTRTRFKS-KIFDERHGFSPTQTKLQKQGYFIPNSRPGLWYKSSEPVRITGKGKAKATDTCHITVEECNDSKEDKKNESQRSSVFYHITSST

Query:  ARSSVFQRLSALTREDKNEGSASESTQLSAFQRLNTT-----SVMRTSTFKRSGTGSGHSMPLWREPLNGGGLNLIAGVWNTSASKHSAAKRQIQSSRVR
         R SVFQR+S    +D N+ S   ST+LSAFQRLNT      S+  T T ++S   S               L++  G    S S  + +    +   +R
Subjt:  ARSSVFQRLSALTREDKNEGSASESTQLSAFQRLNTT-----SVMRTSTFKRSGTGSGHSMPLWREPLNGGGLNLIAGVWNTSASKHSAAKRQIQSSRVR

Query:  SSYP
        S++P
Subjt:  SSYP

KAA0060609.1 uncharacterized protein E6C27_scaffold22G004870 [Cucumis melo var. makuwa]1.1e-4065.61Show/hide
Query:  MAKAGYDFTTRTRFKS-KIFDERHGFSPTQTKLQKQGYFIPNSRPGLWYKSSEPVRITGKGKAKATDTCHITVEECNDSKEDKKNESQRSSVFYHITSST
        MAKAGYDFTTRT  KS KIFDER   SPTQ KLQKQGY IPNSR G+ Y+SSEP+RITGKGKAK T+TCHITVEE  DSKE KK+ SQRSSVF  I  S 
Subjt:  MAKAGYDFTTRTRFKS-KIFDERHGFSPTQTKLQKQGYFIPNSRPGLWYKSSEPVRITGKGKAKATDTCHITVEECNDSKEDKKNESQRSSVFYHITSST

Query:  ARSSVFQRLSALTREDKNEGSASESTQLSAFQRLNT----------TSVMRTSTFKR
         R SVFQR+S    +D N+ S   ST+LSAFQRLNT          TS  R S FKR
Subjt:  ARSSVFQRLSALTREDKNEGSASESTQLSAFQRLNT----------TSVMRTSTFKR

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]1.0e-3864.33Show/hide
Query:  MAKAGYDFTTRTRFKS-KIFDERHGFSPTQTKLQKQGYFIPNSRPGLWYKSSEPVRITGKGKAKATDTCHITVEECNDSKEDKKNESQRSSVFYHITSST
        MAKAGYDFTTRT  KS KIFDER   SPTQ KLQKQGY IPNSR G+ Y+SSEPVRITGKGKAK  +TCHITVEE  DS+E KK  SQRSSVF  I  S 
Subjt:  MAKAGYDFTTRTRFKS-KIFDERHGFSPTQTKLQKQGYFIPNSRPGLWYKSSEPVRITGKGKAKATDTCHITVEECNDSKEDKKNESQRSSVFYHITSST

Query:  ARSSVFQRLSALTREDKNEGSASESTQLSAFQRLNT----------TSVMRTSTFKR
         R SVFQR+S    +D N+ S   ST+LSAFQRLNT          T   R S FKR
Subjt:  ARSSVFQRLSALTREDKNEGSASESTQLSAFQRLNT----------TSVMRTSTFKR

TYK02262.1 uncharacterized protein E5676_scaffold18G00630 [Cucumis melo var. makuwa]1.1e-4065.61Show/hide
Query:  MAKAGYDFTTRTRFKS-KIFDERHGFSPTQTKLQKQGYFIPNSRPGLWYKSSEPVRITGKGKAKATDTCHITVEECNDSKEDKKNESQRSSVFYHITSST
        MAKAGYDFTTRT  KS KIFDER   SPTQ KLQKQGY IPNSR G+ Y+SSEP+RITGKGKAK T+TCHITVEE  DSKE KK+ SQRSSVF  I  S 
Subjt:  MAKAGYDFTTRTRFKS-KIFDERHGFSPTQTKLQKQGYFIPNSRPGLWYKSSEPVRITGKGKAKATDTCHITVEECNDSKEDKKNESQRSSVFYHITSST

Query:  ARSSVFQRLSALTREDKNEGSASESTQLSAFQRLNT----------TSVMRTSTFKR
         R SVFQR+S    +D N+ S   ST+LSAFQRLNT          TS  R S FKR
Subjt:  ARSSVFQRLSALTREDKNEGSASESTQLSAFQRLNT----------TSVMRTSTFKR

TrEMBL top hitse value%identityAlignment
A0A5A7TZU9 Ribonuclease H4.9e-3964.33Show/hide
Query:  MAKAGYDFTTRTRFKS-KIFDERHGFSPTQTKLQKQGYFIPNSRPGLWYKSSEPVRITGKGKAKATDTCHITVEECNDSKEDKKNESQRSSVFYHITSST
        MAKAGYDFTTRT  KS KIFDER   SPTQ KLQKQGY IPNSR G+ Y+SSEPVRITGKGKAK  +TCHITVEE  DS+E KK  SQRSSVF  I  S 
Subjt:  MAKAGYDFTTRTRFKS-KIFDERHGFSPTQTKLQKQGYFIPNSRPGLWYKSSEPVRITGKGKAKATDTCHITVEECNDSKEDKKNESQRSSVFYHITSST

Query:  ARSSVFQRLSALTREDKNEGSASESTQLSAFQRLNT----------TSVMRTSTFKR
         R SVFQR+S    +D N+ S   ST+LSAFQRLNT          T   R S FKR
Subjt:  ARSSVFQRLSALTREDKNEGSASESTQLSAFQRLNT----------TSVMRTSTFKR

A0A5A7UFR3 RNase H domain-containing protein1.3e-3964.33Show/hide
Query:  MAKAGYDFTTRTRFKS-KIFDERHGFSPTQTKLQKQGYFIPNSRPGLWYKSSEPVRITGKGKAKATDTCHITVEECNDSKEDKKNESQRSSVFYHITSST
        MAKAGYDFTTRT  KS KI DER  FSPTQ KLQKQGY IPNSR G+ Y+SSEPVRITGKGKAK  +TCHITVEE  DS+E KK+ SQRSSVF  I  S 
Subjt:  MAKAGYDFTTRTRFKS-KIFDERHGFSPTQTKLQKQGYFIPNSRPGLWYKSSEPVRITGKGKAKATDTCHITVEECNDSKEDKKNESQRSSVFYHITSST

Query:  ARSSVFQRLSALTREDKNEGSASESTQLSAFQRLNT----------TSVMRTSTFKR
         R SVFQR+S    +D N+ S   ST+LSAFQRLNT          T   R S FKR
Subjt:  ARSSVFQRLSALTREDKNEGSASESTQLSAFQRLNT----------TSVMRTSTFKR

A0A5A7UJR2 Reverse transcriptase3.8e-3952.94Show/hide
Query:  MAKAGYDFTTRTRFKS-KIFDERHGFSPTQTKLQKQGYFIPNSRPGLWYKSSEPVRITGKGKAKATDTCHITVEECNDSKEDKKNESQRSSVFYHITSST
        MAKAGYDFTTRT  KS KIFDER   SPTQTKLQKQGY IPNSR G+ Y+SSEPVRITGKGK K  +TCHITVEE  DSKE KK+ SQRSSVF  I  S 
Subjt:  MAKAGYDFTTRTRFKS-KIFDERHGFSPTQTKLQKQGYFIPNSRPGLWYKSSEPVRITGKGKAKATDTCHITVEECNDSKEDKKNESQRSSVFYHITSST

Query:  ARSSVFQRLSALTREDKNEGSASESTQLSAFQRLNTT-----SVMRTSTFKRSGTGSGHSMPLWREPLNGGGLNLIAGVWNTSASKHSAAKRQIQSSRVR
         R SVFQR+S    +D N+ S   ST+LSAFQRLNT      S+  T T ++S   S               L++  G    S S  + +    +   +R
Subjt:  ARSSVFQRLSALTREDKNEGSASESTQLSAFQRLNTT-----SVMRTSTFKRSGTGSGHSMPLWREPLNGGGLNLIAGVWNTSASKHSAAKRQIQSSRVR

Query:  SSYP
        S++P
Subjt:  SSYP

A0A5A7V4F2 Reverse transcriptase domain-containing protein5.3e-4165.61Show/hide
Query:  MAKAGYDFTTRTRFKS-KIFDERHGFSPTQTKLQKQGYFIPNSRPGLWYKSSEPVRITGKGKAKATDTCHITVEECNDSKEDKKNESQRSSVFYHITSST
        MAKAGYDFTTRT  KS KIFDER   SPTQ KLQKQGY IPNSR G+ Y+SSEP+RITGKGKAK T+TCHITVEE  DSKE KK+ SQRSSVF  I  S 
Subjt:  MAKAGYDFTTRTRFKS-KIFDERHGFSPTQTKLQKQGYFIPNSRPGLWYKSSEPVRITGKGKAKATDTCHITVEECNDSKEDKKNESQRSSVFYHITSST

Query:  ARSSVFQRLSALTREDKNEGSASESTQLSAFQRLNT----------TSVMRTSTFKR
         R SVFQR+S    +D N+ S   ST+LSAFQRLNT          TS  R S FKR
Subjt:  ARSSVFQRLSALTREDKNEGSASESTQLSAFQRLNT----------TSVMRTSTFKR

A0A5D3BTY1 Ribonuclease H5.3e-4165.61Show/hide
Query:  MAKAGYDFTTRTRFKS-KIFDERHGFSPTQTKLQKQGYFIPNSRPGLWYKSSEPVRITGKGKAKATDTCHITVEECNDSKEDKKNESQRSSVFYHITSST
        MAKAGYDFTTRT  KS KIFDER   SPTQ KLQKQGY IPNSR G+ Y+SSEP+RITGKGKAK T+TCHITVEE  DSKE KK+ SQRSSVF  I  S 
Subjt:  MAKAGYDFTTRTRFKS-KIFDERHGFSPTQTKLQKQGYFIPNSRPGLWYKSSEPVRITGKGKAKATDTCHITVEECNDSKEDKKNESQRSSVFYHITSST

Query:  ARSSVFQRLSALTREDKNEGSASESTQLSAFQRLNT----------TSVMRTSTFKR
         R SVFQR+S    +D N+ S   ST+LSAFQRLNT          TS  R S FKR
Subjt:  ARSSVFQRLSALTREDKNEGSASESTQLSAFQRLNT----------TSVMRTSTFKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAAGGCGGGTTATGACTTTACAACCCGTACTAGGTTCAAAAGCAAGATATTTGATGAAAGGCATGGGTTTTCTCCTACGCAAACGAAGCTTCAAAAGCAAGGATA
TTTTATACCAAATTCAAGACCAGGACTTTGGTATAAGTCTTCCGAGCCGGTTCGAATAACTGGTAAAGGAAAAGCAAAAGCTACTGACACATGCCACATTACTGTAGAAG
AATGCAACGATTCTAAAGAAGACAAAAAAAATGAAAGTCAAAGAAGTTCTGTTTTTTATCACATCACCTCCTCTACTGCACGCTCTTCAGTTTTCCAGAGGTTGAGTGCA
CTAACAAGGGAGGACAAAAATGAAGGGTCAGCTTCCGAGTCCACCCAACTTTCTGCCTTTCAGAGATTAAATACAACTTCGGTTATGCGAACCTCTACCTTCAAAAGGTC
AGGGACAGGTTCCGGTCACTCCATGCCATTGTGGCGGGAACCACTGAATGGGGGCGGTTTGAATCTCATCGCTGGCGTGTGGAATACAAGTGCATCCAAGCACAGCGCAG
CCAAGAGGCAAATTCAGAGTTCTCGGGTTAGGAGCAGCTATCCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAAAGGCGGGTTATGACTTTACAACCCGTACTAGGTTCAAAAGCAAGATATTTGATGAAAGGCATGGGTTTTCTCCTACGCAAACGAAGCTTCAAAAGCAAGGATA
TTTTATACCAAATTCAAGACCAGGACTTTGGTATAAGTCTTCCGAGCCGGTTCGAATAACTGGTAAAGGAAAAGCAAAAGCTACTGACACATGCCACATTACTGTAGAAG
AATGCAACGATTCTAAAGAAGACAAAAAAAATGAAAGTCAAAGAAGTTCTGTTTTTTATCACATCACCTCCTCTACTGCACGCTCTTCAGTTTTCCAGAGGTTGAGTGCA
CTAACAAGGGAGGACAAAAATGAAGGGTCAGCTTCCGAGTCCACCCAACTTTCTGCCTTTCAGAGATTAAATACAACTTCGGTTATGCGAACCTCTACCTTCAAAAGGTC
AGGGACAGGTTCCGGTCACTCCATGCCATTGTGGCGGGAACCACTGAATGGGGGCGGTTTGAATCTCATCGCTGGCGTGTGGAATACAAGTGCATCCAAGCACAGCGCAG
CCAAGAGGCAAATTCAGAGTTCTCGGGTTAGGAGCAGCTATCCCTAG
Protein sequenceShow/hide protein sequence
MAKAGYDFTTRTRFKSKIFDERHGFSPTQTKLQKQGYFIPNSRPGLWYKSSEPVRITGKGKAKATDTCHITVEECNDSKEDKKNESQRSSVFYHITSSTARSSVFQRLSA
LTREDKNEGSASESTQLSAFQRLNTTSVMRTSTFKRSGTGSGHSMPLWREPLNGGGLNLIAGVWNTSASKHSAAKRQIQSSRVRSSYP