CuGenDBv2

Gene ID	PI0001754
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase
Genome location	chr06:27600196..27600669
RNA-Seq Expression	PI0001754
Synteny	PI0001754
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025443.1 pol protein [Cucumis melo var. makuwa]

4.2e-72

87.26

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW
        MSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDILVYSKTEAEHE+HLR+VLETLRAN+L+AKFSKC+FWLK+VSFLGHVVS  GVSVDP KIEA+TNW
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW

Query:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTRKGTPFVWSEACEDSFQILK
         RPS VSE+RSFLGLA YYRR VEDFSRIA+PLTQLTRKGTPFVWS ACE SFQ LK
Subjt:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTRKGTPFVWSEACEDSFQILK

KAA0057168.1 pol protein [Cucumis melo var. makuwa]

1.9e-72

86.62

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Query:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW
        MSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTEAEHE+HLR+VLETLRAN+L+AKFSKCEFWLK+VSFLGHVVS  GVSVDP KIEA+TNW
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW

Query:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTRKGTPFVWSEACEDSFQILK
         RPS+VSE+RSFLGLA YYRR VEDFSRIASPLTQLTRKGTPFVWS  C++SFQ LK
Subjt:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTRKGTPFVWSEACEDSFQILK

TYK04739.1 pol protein [Cucumis melo var. makuwa]

4.2e-72

87.26

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW
        MSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDILVYSKTEAEHE+HLR+VLETLRAN+L+AKFSKC+FWLK+VSFLGHVVS  GVSVDP KIEA+TNW
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW

Query:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTRKGTPFVWSEACEDSFQILK
         RPS VSE+RSFLGLA YYRR VEDFSRIA+PLTQLTRKGTPFVWS ACE SFQ LK
Subjt:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTRKGTPFVWSEACEDSFQILK

TYK05193.1 pol protein [Cucumis melo var. makuwa]

1.9e-72

86.62

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW
        MSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTEAEHE+HL +VLETLRAN+L+AKFSKCEFWL++V+FLGHVVS  GVSVDPTKIEA+TNW
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW

Query:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTRKGTPFVWSEACEDSFQILK
         RPS+VSE+RSFLGLA YYRR VEDFSRIASPLTQLTRKGTPFVWS ACE SFQ LK
Subjt:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTRKGTPFVWSEACEDSFQILK

TYK18480.1 pol protein [Cucumis melo var. makuwa]

1.9e-72

86.62

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW
        MSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTEAEHE+HL +VLETLRAN+L+AKFSKCEFWL++V+FLGHVVS  GVSVDPTKIEA+TNW
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW

Query:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTRKGTPFVWSEACEDSFQILK
         RPS+VSE+RSFLGLA YYRR VEDFSRIASPLTQLTRKGTPFVWS ACE SFQ LK
Subjt:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTRKGTPFVWSEACEDSFQILK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SLA1 Pol protein

2.1e-72

87.26

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW
        MSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDILVYSKTEAEHE+HLR+VLETLRAN+L+AKFSKC+FWLK+VSFLGHVVS  GVSVDP KIEA+TNW
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW

Query:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTRKGTPFVWSEACEDSFQILK
         RPS VSE+RSFLGLA YYRR VEDFSRIA+PLTQLTRKGTPFVWS ACE SFQ LK
Subjt:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTRKGTPFVWSEACEDSFQILK

A0A5A7UPX4 Pol protein

9.2e-73

86.62

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW
        MSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTEAEHE+HLR+VLETLRAN+L+AKFSKCEFWLK+VSFLGHVVS  GVSVDP KIEA+TNW
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW

Query:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTRKGTPFVWSEACEDSFQILK
         RPS+VSE+RSFLGLA YYRR VEDFSRIASPLTQLTRKGTPFVWS  C++SFQ LK
Subjt:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTRKGTPFVWSEACEDSFQILK

A0A5D3BZN1 Reverse transcriptase

9.2e-73

86.62

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW
        MSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTEAEHE+HL +VLETLRAN+L+AKFSKCEFWL++V+FLGHVVS  GVSVDPTKIEA+TNW
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW

Query:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTRKGTPFVWSEACEDSFQILK
         RPS+VSE+RSFLGLA YYRR VEDFSRIASPLTQLTRKGTPFVWS ACE SFQ LK
Subjt:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTRKGTPFVWSEACEDSFQILK

A0A5D3C2W7 Pol protein

2.1e-72

87.26

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW
        MSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDILVYSKTEAEHE+HLR+VLETLRAN+L+AKFSKC+FWLK+VSFLGHVVS  GVSVDP KIEA+TNW
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW

Query:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTRKGTPFVWSEACEDSFQILK
         RPS VSE+RSFLGLA YYRR VEDFSRIA+PLTQLTRKGTPFVWS ACE SFQ LK
Subjt:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTRKGTPFVWSEACEDSFQILK

A0A5D3D4M7 Pol protein

9.2e-73

86.62

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW
        MSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTEAEHE+HL +VLETLRAN+L+AKFSKCEFWL++V+FLGHVVS  GVSVDPTKIEA+TNW
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW

Query:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTRKGTPFVWSEACEDSFQILK
         RPS+VSE+RSFLGLA YYRR VEDFSRIASPLTQLTRKGTPFVWS ACE SFQ LK
Subjt:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTRKGTPFVWSEACEDSFQILK

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

4.0e-25

40.29

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW
        M FGL NAPA F   MN + +  L+   +V++DDI+V+S +  EH   L  V E L    L  +  KCEF  ++ +FLGHV++ +G+  +P KIEAI  +
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW

Query:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTRK
          P+   E+++FLGL  YYR+ + +F+ IA P+T+  +K
Subjt:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTRK

P0CT41 Transposon Tf2-12 polyprotein

8.4e-23

31.21

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Query:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW
        M +G++ APA F   +N +  +  ++ V+ ++DDIL++SK+E+EH  H++ VL+ L+   L    +KCEF   QV F+G+ +S+ G +     I+ +  W
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW

Query:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTRKGTPFVWSEACEDSFQILK
         +P +  E+R FLG  +Y R+ +   S++  PL  L +K   + W+     + + +K
Subjt:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTRKGTPFVWSEACEDSFQILK

P10401 Retrovirus-related Pol polyprotein from transposon gypsy

5.8e-24

33.93

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Query:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW
        + FGL NA ++F   ++ V ++ +     V++DD++++S+ E++H  H+  VL+ L    +     K  F+ + V +LG +VSK+G   DP K++AI  +
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW

Query:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTR-----------KGTPFVWSEACEDSFQILK
          P  V +VRSFLGLASYYR  ++DF+ IA P+T + +           K  P  ++E   ++FQ L+
Subjt:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTR-----------KGTPFVWSEACEDSFQILK

P20825 Retrovirus-related Pol polyprotein from transposon 297

2.4e-25

37.59

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Query:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW
        M FGL NAPA F   MN + +  L+   +V++DDI+++S +  EH + ++ V   L    L  +  KCEF  K+ +FLGH+V+ +G+  +P K++AI ++
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW

Query:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTRKGT
          P+   E+R+FLGL  YYR+ + +++ IA P+T   +K T
Subjt:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTRKGT

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

1.4e-25

39.86

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Query:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW
        + FGL NAPA+F  +++ + ++ +     V+IDDI+V+S+    H  +LR VL +L    L     K  F   QV FLG++V+ +G+  DP K+ AI+  
Subjt:  MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNW

Query:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTR
          P+SV E++ FLG+ SYYR+ ++D++++A PLT LTR
Subjt:  SRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTR

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

8.1e-21

40.71

Show/hide

Query:  DHLRKVLETLRANQLFAKFSKCEFWLKQVSFLG--HVVSKNGVSVDPTKIEAITNWSRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTRKGTPFV
        +HL  VL+    +Q +A   KC F   Q+++LG  H++S  GVS DP K+EA+  W  P + +E+R FLGL  YYRR V+++ +I  PLT+L +K +   
Subjt:  DHLRKVLETLRANQLFAKFSKCEFWLKQVSFLG--HVVSKNGVSVDPTKIEAITNWSRPSSVSEVRSFLGLASYYRRVVEDFSRIASPLTQLTRKGTPFV

Query:  WSEACEDSFQILK
        W+E    +F+ LK
Subjt:  WSEACEDSFQILK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCATTTGGTTTGACTAACGCTCCTGCTGTATTCATGGATCTAATGAACAGGGTGTTCAAGGACTTCTTGGACACTTTCGTGATTGTGTTCATTGACGACATCCTAGT
TTATTCTAAGACGGAGGCCGAGCATGAGGATCATTTGCGTAAGGTCTTAGAGACTCTTCGAGCAAATCAGTTGTTTGCCAAGTTCTCGAAGTGTGAATTCTGGTTGAAGC
AAGTATCCTTCCTAGGCCATGTGGTGTCCAAAAACGGTGTTTCAGTAGATCCAACAAAGATAGAAGCAATCACCAATTGGTCCAGGCCTTCCTCAGTTAGCGAGGTTCGT
AGTTTTCTGGGTCTCGCAAGTTATTACCGCAGGGTCGTGGAGGATTTCTCCCGTATTGCTTCTCCGTTGACTCAGTTGACTAGGAAGGGGACTCCATTTGTTTGGAGTGA
GGCTTGTGAGGACAGTTTCCAGATCCTCAAGTAG

mRNA sequence

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Protein sequence

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MSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHEDHLRKVLETLRANQLFAKFSKCEFWLKQVSFLGHVVSKNGVSVDPTKIEAITNWSRPSSVSEVR
SFLGLASYYRRVVEDFSRIASPLTQLTRKGTPFVWSEACEDSFQILK

PI0001754 (gene) of Melon (PI 482460) v1 genome