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PI0001756 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0001756
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr12:16685720..16686076
RNA-Seq ExpressionPI0001756
SyntenyPI0001756
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041710.1 putative retroelement [Cucumis melo var. makuwa]1.4e-1466.67Show/hide
Query:  VNSDKKHSIERLKSLGATIFEGSTDHADAEAWLNLVEKCFEVTECPEERKVKLATFYYRK
        ++ +K + IERLK LGAT+FEGSTD ADAE WLN++EKCF+V  CPEERKV+LATF  +K
Subjt:  VNSDKKHSIERLKSLGATIFEGSTDHADAEAWLNLVEKCFEVTECPEERKVKLATFYYRK

KAA0047659.1 uncharacterized protein E6C27_scaffold115G001520 [Cucumis melo var. makuwa]5.0e-1770.13Show/hide
Query:  YQEMIKKFMDSLKNFQVNSDKKHSIERLKSLGAT-IFEGSTDHADAEAWLNLVEKCFEVTECPEERKVKLATFYYRK
        YQE ++KFM SL   QV SDKKHS ERLK L AT +FEGS D ADAE WLNL+EKCFEV + PEERKVKLATF  +K
Subjt:  YQEMIKKFMDSLKNFQVNSDKKHSIERLKSLGAT-IFEGSTDHADAEAWLNLVEKCFEVTECPEERKVKLATFYYRK

KAA0054081.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-1468.33Show/hide
Query:  DKKHSIERLKSLGATIFEGSTDHADAEAWLNLVEKCFEVTECPEERKVKLATFYYRKNQK
        +K + IERLK LGAT+FEGSTD ADAE WLN++EKCF+V  CPEERKV+LATF  +K  K
Subjt:  DKKHSIERLKSLGATIFEGSTDHADAEAWLNLVEKCFEVTECPEERKVKLATFYYRKNQK

KAA0062654.1 uncharacterized protein E6C27_scaffold79G001720 [Cucumis melo var. makuwa]6.3e-2064.47Show/hide
Query:  DEQNYQEMIKKFMDSLKNFQVNSDKKHSIERLKSLGATIFEGSTDHADAEAWLNLVEKCFEVTECPEERKVKLATF
        +E+ YQ+M++K ++SL + Q  S KKH+IERLKSLGA +FEGSTD  D E WLNL+EKCFEV +CP+ER+VKLATF
Subjt:  DEQNYQEMIKKFMDSLKNFQVNSDKKHSIERLKSLGATIFEGSTDHADAEAWLNLVEKCFEVTECPEERKVKLATF

TYK01187.1 uncharacterized protein E5676_scaffold2044G00320 [Cucumis melo var. makuwa]6.3e-2064.47Show/hide
Query:  DEQNYQEMIKKFMDSLKNFQVNSDKKHSIERLKSLGATIFEGSTDHADAEAWLNLVEKCFEVTECPEERKVKLATF
        +E+ YQ+M++K ++SL + Q  S KKH+IERLKSLGA +FEGSTD  D E WLNL+EKCFEV +CP+ER+VKLATF
Subjt:  DEQNYQEMIKKFMDSLKNFQVNSDKKHSIERLKSLGATIFEGSTDHADAEAWLNLVEKCFEVTECPEERKVKLATF

TrEMBL top hitse value%identityAlignment
A0A5A7TEI1 Putative retroelement6.6e-1566.67Show/hide
Query:  VNSDKKHSIERLKSLGATIFEGSTDHADAEAWLNLVEKCFEVTECPEERKVKLATFYYRK
        ++ +K + IERLK LGAT+FEGSTD ADAE WLN++EKCF+V  CPEERKV+LATF  +K
Subjt:  VNSDKKHSIERLKSLGATIFEGSTDHADAEAWLNLVEKCFEVTECPEERKVKLATFYYRK

A0A5A7U2K3 Retrotrans_gag domain-containing protein2.4e-1770.13Show/hide
Query:  YQEMIKKFMDSLKNFQVNSDKKHSIERLKSLGAT-IFEGSTDHADAEAWLNLVEKCFEVTECPEERKVKLATFYYRK
        YQE ++KFM SL   QV SDKKHS ERLK L AT +FEGS D ADAE WLNL+EKCFEV + PEERKVKLATF  +K
Subjt:  YQEMIKKFMDSLKNFQVNSDKKHSIERLKSLGAT-IFEGSTDHADAEAWLNLVEKCFEVTECPEERKVKLATFYYRK

A0A5A7UKK4 Reverse transcriptase6.6e-1568.33Show/hide
Query:  DKKHSIERLKSLGATIFEGSTDHADAEAWLNLVEKCFEVTECPEERKVKLATFYYRKNQK
        +K + IERLK LGAT+FEGSTD ADAE WLN++EKCF+V  CPEERKV+LATF  +K  K
Subjt:  DKKHSIERLKSLGATIFEGSTDHADAEAWLNLVEKCFEVTECPEERKVKLATFYYRKNQK

A0A5A7V5X4 Uncharacterized protein3.1e-2064.47Show/hide
Query:  DEQNYQEMIKKFMDSLKNFQVNSDKKHSIERLKSLGATIFEGSTDHADAEAWLNLVEKCFEVTECPEERKVKLATF
        +E+ YQ+M++K ++SL + Q  S KKH+IERLKSLGA +FEGSTD  D E WLNL+EKCFEV +CP+ER+VKLATF
Subjt:  DEQNYQEMIKKFMDSLKNFQVNSDKKHSIERLKSLGATIFEGSTDHADAEAWLNLVEKCFEVTECPEERKVKLATF

A0A5D3BPE1 Uncharacterized protein3.1e-2064.47Show/hide
Query:  DEQNYQEMIKKFMDSLKNFQVNSDKKHSIERLKSLGATIFEGSTDHADAEAWLNLVEKCFEVTECPEERKVKLATF
        +E+ YQ+M++K ++SL + Q  S KKH+IERLKSLGA +FEGSTD  D E WLNL+EKCFEV +CP+ER+VKLATF
Subjt:  DEQNYQEMIKKFMDSLKNFQVNSDKKHSIERLKSLGATIFEGSTDHADAEAWLNLVEKCFEVTECPEERKVKLATF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTAATAGAGAAGAAGAACAAAATTCTGAGTTAGAAGCAAGTGCAAGGCAACAACAGTCAAGAAAAGATGAACAAAATTATCAAGAGATGATTAAAAAATTCATGGA
CTCACTGAAAAATTTTCAAGTAAACTCTGACAAAAAGCATAGCATCGAAAGATTGAAATCTCTAGGTGCTACCATATTTGAAGGATCCACAGATCATGCTGATGCCGAAG
CATGGCTGAATCTAGTAGAAAAATGTTTTGAAGTAACGGAATGCCCAGAAGAAAGAAAGGTTAAATTAGCCACTTTCTATTACAGAAAGAATCAGAAGGTTGGTGGGAAT
CGATTAAGGGTCATAGGGAAGATATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCTAATAGAGAAGAAGAACAAAATTCTGAGTTAGAAGCAAGTGCAAGGCAACAACAGTCAAGAAAAGATGAACAAAATTATCAAGAGATGATTAAAAAATTCATGGA
CTCACTGAAAAATTTTCAAGTAAACTCTGACAAAAAGCATAGCATCGAAAGATTGAAATCTCTAGGTGCTACCATATTTGAAGGATCCACAGATCATGCTGATGCCGAAG
CATGGCTGAATCTAGTAGAAAAATGTTTTGAAGTAACGGAATGCCCAGAAGAAAGAAAGGTTAAATTAGCCACTTTCTATTACAGAAAGAATCAGAAGGTTGGTGGGAAT
CGATTAAGGGTCATAGGGAAGATATAG
Protein sequenceShow/hide protein sequence
MPNREEEQNSELEASARQQQSRKDEQNYQEMIKKFMDSLKNFQVNSDKKHSIERLKSLGATIFEGSTDHADAEAWLNLVEKCFEVTECPEERKVKLATFYYRKNQKVGGN
RLRVIGKI