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PI0001781 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0001781
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr02:17049176..17050274
RNA-Seq ExpressionPI0001781
SyntenyPI0001781
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047074.1 retrotransposon protein [Cucumis melo var. makuwa]5.4e-4550.68Show/hide
Query:  MDRRCFAILCHLLRTTARLSLTEIVDVEEMVAMFLHVLVHDVKNRVIQKEFVWSGEKISWHFNVVLLVVLPLHDELLKKPQPVMNACIDPQWRKMTN-VD
        MDRRCF ILCHLLRT A L+ TE+VDVEEMVAMFLH+L HDVKNRVIQ+EF+ S E IS HFN+VLL V+ LH+ELLKKPQPV N C D +WR   N +D
Subjt:  MDRRCFAILCHLLRTTARLSLTEIVDVEEMVAMFLHVLVHDVKNRVIQKEFVWSGEKISWHFNVVLLVVLPLHDELLKKPQPVMNACIDPQWRKMTN-VD

Query:  IL----------------------------------------------------------------------DEIDEGDSTYATIAGDDIHYIETSNEWS
         L                                                                      D IDE DST+AT   DDIHYIETSNEWS
Subjt:  IL----------------------------------------------------------------------DEIDEGDSTYATIAGDDIHYIETSNEWS

Query:  QWRDDLAEEMFSEWELRAQ
        QWRDDLAEEMF+EWELR Q
Subjt:  QWRDDLAEEMFSEWELRAQ

TYK08389.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.3e-4343.55Show/hide
Query:  MDRRCFAILCHLLRTTARLSLTEIVDVEEMVAMFLHVLVHDVKNRVIQKEFVWSGEKISWHFNVVLLVVLPLHDELLKKPQPVMNACIDPQW--------
        MDRRCFAILCHLLRT+A L  TE++DVEEMVAMFLH+L HDVKNR+IQKEF  SGE +S HFN+VLL +L LHDELLKKPQPV N+C DP+W        
Subjt:  MDRRCFAILCHLLRTTARLSLTEIVDVEEMVAMFLHVLVHDVKNRVIQKEFVWSGEKISWHFNVVLLVVLPLHDELLKKPQPVMNACIDPQW--------

Query:  --------------------------------------------------------------------------------------------RKMTNVDI
                                                                                                    R+MTN +I
Subjt:  --------------------------------------------------------------------------------------------RKMTNVDI

Query:  LDEIDEGDSTYATIAGDDIHYIETSNEWSQWRDDLAEEMFSEWELRAQ
        +D++DEGDSTYAT  GD+I+YIE SNEWS+ RD LA  MFS+WELR Q
Subjt:  LDEIDEGDSTYATIAGDDIHYIETSNEWSQWRDDLAEEMFSEWELRAQ

TYK16035.1 retrotransposon protein [Cucumis melo var. makuwa]2.1e-4140.28Show/hide
Query:  MDRRCFAILCHLLRTTARLSLTEIVDVEEMVAMFLHVLVHDVKNRVIQKEFVWSGEKISWHFNVVLLVVLPLHDELLKKPQPVMNACIDPQW--------
        MDRRCFAILCHLLRT A L+ TE+VDVEEMVAMFLH+L +DVKNRVIQ+EF+ SGE IS HFN+VLL V+ LH ELLKKPQPV N C D +W        
Subjt:  MDRRCFAILCHLLRTTARLSLTEIVDVEEMVAMFLHVLVHDVKNRVIQKEFVWSGEKISWHFNVVLLVVLPLHDELLKKPQPVMNACIDPQW--------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------------------------RKMTNVDILDEIDEGDSTYATIAGDDIHYIETSNEWSQWRDDLAEEMFSEWELRAQ
                                        R+MTN DI D IDE DST+ATIA DDIHYIETSNEWSQWRDDLAEEMF+EWELR Q
Subjt:  --------------------------------RKMTNVDILDEIDEGDSTYATIAGDDIHYIETSNEWSQWRDDLAEEMFSEWELRAQ

XP_008441953.1 PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo]2.3e-4343.55Show/hide
Query:  MDRRCFAILCHLLRTTARLSLTEIVDVEEMVAMFLHVLVHDVKNRVIQKEFVWSGEKISWHFNVVLLVVLPLHDELLKKPQPVMNACIDPQW--------
        MDRRCFAILCHLLRT+A L  TE++DVEEMVAMFLH+L HDVKNR+IQKEF  SGE +S HFN+VLL +L LHDELLKKPQPV N+C DP+W        
Subjt:  MDRRCFAILCHLLRTTARLSLTEIVDVEEMVAMFLHVLVHDVKNRVIQKEFVWSGEKISWHFNVVLLVVLPLHDELLKKPQPVMNACIDPQW--------

Query:  --------------------------------------------------------------------------------------------RKMTNVDI
                                                                                                    R+MTN +I
Subjt:  --------------------------------------------------------------------------------------------RKMTNVDI

Query:  LDEIDEGDSTYATIAGDDIHYIETSNEWSQWRDDLAEEMFSEWELRAQ
        +D++DEGDSTYAT  GD+I+YIE SNEWS+ RD LA  MFS+WELR Q
Subjt:  LDEIDEGDSTYATIAGDDIHYIETSNEWSQWRDDLAEEMFSEWELRAQ

XP_016903646.1 PREDICTED: uncharacterized protein LOC107992265 [Cucumis melo]2.1e-4140.42Show/hide
Query:  MDRRCFAILCHLLRTTARLSLTEIVDVEEMVAMFLHVLVHDVKNRVIQKEFVWSGEKISWHFNVVLLVVLPLHDELLKKPQPVMNACIDPQW--------
        MDRRCFAILCHLLRT A L+ TE+VDVEEMVAMFLH+L +DVKNRVIQ+EF+ SGE IS HFN+VLL V+ LH ELLKKPQPV N C D +W        
Subjt:  MDRRCFAILCHLLRTTARLSLTEIVDVEEMVAMFLHVLVHDVKNRVIQKEFVWSGEKISWHFNVVLLVVLPLHDELLKKPQPVMNACIDPQW--------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------------------------RKMTNVDILDEIDEGDSTYATIAGDDIHYIETSNEWSQWRDDLAEEMFSEWELRAQ
                                       R+MTN DI D IDE DST+ATIA DDIHYIETSNEWSQWRDDLAEEMF+EWELR Q
Subjt:  -------------------------------RKMTNVDILDEIDEGDSTYATIAGDDIHYIETSNEWSQWRDDLAEEMFSEWELRAQ

TrEMBL top hitse value%identityAlignment
A0A1S3B4J8 uncharacterized protein LOC1034859521.1e-4343.55Show/hide
Query:  MDRRCFAILCHLLRTTARLSLTEIVDVEEMVAMFLHVLVHDVKNRVIQKEFVWSGEKISWHFNVVLLVVLPLHDELLKKPQPVMNACIDPQW--------
        MDRRCFAILCHLLRT+A L  TE++DVEEMVAMFLH+L HDVKNR+IQKEF  SGE +S HFN+VLL +L LHDELLKKPQPV N+C DP+W        
Subjt:  MDRRCFAILCHLLRTTARLSLTEIVDVEEMVAMFLHVLVHDVKNRVIQKEFVWSGEKISWHFNVVLLVVLPLHDELLKKPQPVMNACIDPQW--------

Query:  --------------------------------------------------------------------------------------------RKMTNVDI
                                                                                                    R+MTN +I
Subjt:  --------------------------------------------------------------------------------------------RKMTNVDI

Query:  LDEIDEGDSTYATIAGDDIHYIETSNEWSQWRDDLAEEMFSEWELRAQ
        +D++DEGDSTYAT  GD+I+YIE SNEWS+ RD LA  MFS+WELR Q
Subjt:  LDEIDEGDSTYATIAGDDIHYIETSNEWSQWRDDLAEEMFSEWELRAQ

A0A5A7U0J9 Putative nuclease HARBI11.1e-4343.55Show/hide
Query:  MDRRCFAILCHLLRTTARLSLTEIVDVEEMVAMFLHVLVHDVKNRVIQKEFVWSGEKISWHFNVVLLVVLPLHDELLKKPQPVMNACIDPQW--------
        MDRRCFAILCHLLRT+A L  TE++DVEEMVAMFLH+L HDVKNR+IQKEF  SGE +S HFN+VLL +L LHDELLKKPQPV N+C DP+W        
Subjt:  MDRRCFAILCHLLRTTARLSLTEIVDVEEMVAMFLHVLVHDVKNRVIQKEFVWSGEKISWHFNVVLLVVLPLHDELLKKPQPVMNACIDPQW--------

Query:  --------------------------------------------------------------------------------------------RKMTNVDI
                                                                                                    R+MTN +I
Subjt:  --------------------------------------------------------------------------------------------RKMTNVDI

Query:  LDEIDEGDSTYATIAGDDIHYIETSNEWSQWRDDLAEEMFSEWELRAQ
        +D++DEGDSTYAT  GD+I+YIE SNEWS+ RD LA  MFS+WELR Q
Subjt:  LDEIDEGDSTYATIAGDDIHYIETSNEWSQWRDDLAEEMFSEWELRAQ

A0A5D3BZB1 Retrotransposon protein2.6e-4550.68Show/hide
Query:  MDRRCFAILCHLLRTTARLSLTEIVDVEEMVAMFLHVLVHDVKNRVIQKEFVWSGEKISWHFNVVLLVVLPLHDELLKKPQPVMNACIDPQWRKMTN-VD
        MDRRCF ILCHLLRT A L+ TE+VDVEEMVAMFLH+L HDVKNRVIQ+EF+ S E IS HFN+VLL V+ LH+ELLKKPQPV N C D +WR   N +D
Subjt:  MDRRCFAILCHLLRTTARLSLTEIVDVEEMVAMFLHVLVHDVKNRVIQKEFVWSGEKISWHFNVVLLVVLPLHDELLKKPQPVMNACIDPQWRKMTN-VD

Query:  IL----------------------------------------------------------------------DEIDEGDSTYATIAGDDIHYIETSNEWS
         L                                                                      D IDE DST+AT   DDIHYIETSNEWS
Subjt:  IL----------------------------------------------------------------------DEIDEGDSTYATIAGDDIHYIETSNEWS

Query:  QWRDDLAEEMFSEWELRAQ
        QWRDDLAEEMF+EWELR Q
Subjt:  QWRDDLAEEMFSEWELRAQ

A0A5D3CDG6 Putative nuclease HARBI11.1e-4343.55Show/hide
Query:  MDRRCFAILCHLLRTTARLSLTEIVDVEEMVAMFLHVLVHDVKNRVIQKEFVWSGEKISWHFNVVLLVVLPLHDELLKKPQPVMNACIDPQW--------
        MDRRCFAILCHLLRT+A L  TE++DVEEMVAMFLH+L HDVKNR+IQKEF  SGE +S HFN+VLL +L LHDELLKKPQPV N+C DP+W        
Subjt:  MDRRCFAILCHLLRTTARLSLTEIVDVEEMVAMFLHVLVHDVKNRVIQKEFVWSGEKISWHFNVVLLVVLPLHDELLKKPQPVMNACIDPQW--------

Query:  --------------------------------------------------------------------------------------------RKMTNVDI
                                                                                                    R+MTN +I
Subjt:  --------------------------------------------------------------------------------------------RKMTNVDI

Query:  LDEIDEGDSTYATIAGDDIHYIETSNEWSQWRDDLAEEMFSEWELRAQ
        +D++DEGDSTYAT  GD+I+YIE SNEWS+ RD LA  MFS+WELR Q
Subjt:  LDEIDEGDSTYATIAGDDIHYIETSNEWSQWRDDLAEEMFSEWELRAQ

A0A5D3CX37 Retrotransposon protein1.0e-4140.28Show/hide
Query:  MDRRCFAILCHLLRTTARLSLTEIVDVEEMVAMFLHVLVHDVKNRVIQKEFVWSGEKISWHFNVVLLVVLPLHDELLKKPQPVMNACIDPQW--------
        MDRRCFAILCHLLRT A L+ TE+VDVEEMVAMFLH+L +DVKNRVIQ+EF+ SGE IS HFN+VLL V+ LH ELLKKPQPV N C D +W        
Subjt:  MDRRCFAILCHLLRTTARLSLTEIVDVEEMVAMFLHVLVHDVKNRVIQKEFVWSGEKISWHFNVVLLVVLPLHDELLKKPQPVMNACIDPQW--------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------------------------RKMTNVDILDEIDEGDSTYATIAGDDIHYIETSNEWSQWRDDLAEEMFSEWELRAQ
                                        R+MTN DI D IDE DST+ATIA DDIHYIETSNEWSQWRDDLAEEMF+EWELR Q
Subjt:  --------------------------------RKMTNVDILDEIDEGDSTYATIAGDDIHYIETSNEWSQWRDDLAEEMFSEWELRAQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)1.1e-0832.99Show/hide
Query:  MDRRCFAILCHLLRTTARLSLTEIVDVEEMVAMFLHVLVHDVKNRVIQKEFVWSGEKISWHFNVVLLVVLPL---------HDELLKKPQPVMNACI
        MD+  F  LC LL+T   L  T  + +E  +A+FL ++ H+++ R +Q+ F +SGE IS HFN VL  V+ +         + + L+   P    C+
Subjt:  MDRRCFAILCHLLRTTARLSLTEIVDVEEMVAMFLHVLVHDVKNRVIQKEFVWSGEKISWHFNVVLLVVLPL---------HDELLKKPQPVMNACI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGAAGATGTTTTGCTATTCTATGCCACCTCCTTAGGACAACCGCTAGATTATCGTTGACGGAAATTGTCGATGTTGAGGAGATGGTCGCCATGTTCCTTCATGT
ATTGGTGCACGACGTGAAGAATAGAGTGATTCAAAAGGAGTTCGTCTGGTCTGGTGAGAAAATTTCATGGCATTTCAACGTAGTCTTATTGGTAGTGCTACCCCTGCATG
ACGAGTTGTTGAAAAAACCACAACCAGTAATGAATGCATGCATAGATCCCCAATGGAGAAAGATGACGAACGTTGATATACTAGATGAAATCGATGAGGGAGATTCGACA
TATGCAACAATTGCGGGTGATGACATTCACTACATTGAGACCTCGAACGAATGGAGCCAATGGAGGGATGATCTGGCCGAAGAAATGTTTAGTGAATGGGAGTTACGTGC
TCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACAGAAGATGTTTTGCTATTCTATGCCACCTCCTTAGGACAACCGCTAGATTATCGTTGACGGAAATTGTCGATGTTGAGGAGATGGTCGCCATGTTCCTTCATGT
ATTGGTGCACGACGTGAAGAATAGAGTGATTCAAAAGGAGTTCGTCTGGTCTGGTGAGAAAATTTCATGGCATTTCAACGTAGTCTTATTGGTAGTGCTACCCCTGCATG
ACGAGTTGTTGAAAAAACCACAACCAGTAATGAATGCATGCATAGATCCCCAATGGAGAAAGATGACGAACGTTGATATACTAGATGAAATCGATGAGGGAGATTCGACA
TATGCAACAATTGCGGGTGATGACATTCACTACATTGAGACCTCGAACGAATGGAGCCAATGGAGGGATGATCTGGCCGAAGAAATGTTTAGTGAATGGGAGTTACGTGC
TCAGTAG
Protein sequenceShow/hide protein sequence
MDRRCFAILCHLLRTTARLSLTEIVDVEEMVAMFLHVLVHDVKNRVIQKEFVWSGEKISWHFNVVLLVVLPLHDELLKKPQPVMNACIDPQWRKMTNVDILDEIDEGDST
YATIAGDDIHYIETSNEWSQWRDDLAEEMFSEWELRAQ