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PI0001793 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0001793
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag-pol polyprotein
Genome locationchr11:16500504..16501300
RNA-Seq ExpressionPI0001793
SyntenyPI0001793
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066271.1 gag-pol polyprotein [Cucumis melo var. makuwa]9.0e-0454.76Show/hide
Query:  SKPSSKAPKIITTKAGRRKISPNIPIVPIDDISFHSEENVQK
        S P +K  ++++TK GRRK+ PN+P VPID +SFHSEE   K
Subjt:  SKPSSKAPKIITTKAGRRKISPNIPIVPIDDISFHSEENVQK

TYJ97654.1 gag-pol polyprotein [Cucumis melo var. makuwa]9.0e-0454.76Show/hide
Query:  SKPSSKAPKIITTKAGRRKISPNIPIVPIDDISFHSEENVQK
        S P +K  ++++TK GRRK+ PN+P VPID +SFHSEE   K
Subjt:  SKPSSKAPKIITTKAGRRKISPNIPIVPIDDISFHSEENVQK

XP_008450214.1 PREDICTED: uncharacterized protein LOC103491875 [Cucumis melo]3.1e-0442.35Show/hide
Query:  KSIKTESFPQTNQFCFKKTYASPND---STEPSFENPVPKAKSSKPSSKAPKIITTKAGRRKISPNIPIVPIDDISFHSEENVQK
        +S + E  P     C ++   + +D   +T  S E PV +    + S +  + ITTK GR+KI PNIP VPID ISFH EENVQ+
Subjt:  KSIKTESFPQTNQFCFKKTYASPND---STEPSFENPVPKAKSSKPSSKAPKIITTKAGRRKISPNIPIVPIDDISFHSEENVQK

TrEMBL top hitse value%identityAlignment
A0A1S3BN53 uncharacterized protein LOC1034918751.5e-0442.35Show/hide
Query:  KSIKTESFPQTNQFCFKKTYASPND---STEPSFENPVPKAKSSKPSSKAPKIITTKAGRRKISPNIPIVPIDDISFHSEENVQK
        +S + E  P     C ++   + +D   +T  S E PV +    + S +  + ITTK GR+KI PNIP VPID ISFH EENVQ+
Subjt:  KSIKTESFPQTNQFCFKKTYASPND---STEPSFENPVPKAKSSKPSSKAPKIITTKAGRRKISPNIPIVPIDDISFHSEENVQK

A0A5A7SZY3 Reverse transcriptase Ty1/copia-type domain-containing protein7.4e-0452.38Show/hide
Query:  NDSTEPSFENPVPKAKSSKPSSK----APKIITTKAGRRKISPNIPIVPIDDISFHSEENVQK
        +D T PS E      K S+PS +      + ITTK GR+KI  NIP VPID ISFH EENVQ+
Subjt:  NDSTEPSFENPVPKAKSSKPSSK----APKIITTKAGRRKISPNIPIVPIDDISFHSEENVQK

A0A5A7VKU4 Gag-pol polyprotein4.3e-0454.76Show/hide
Query:  SKPSSKAPKIITTKAGRRKISPNIPIVPIDDISFHSEENVQK
        S P +K  ++++TK GRRK+ PN+P VPID +SFHSEE   K
Subjt:  SKPSSKAPKIITTKAGRRKISPNIPIVPIDDISFHSEENVQK

A0A5D3BF02 Gag-pol polyprotein4.3e-0454.76Show/hide
Query:  SKPSSKAPKIITTKAGRRKISPNIPIVPIDDISFHSEENVQK
        S P +K  ++++TK GRRK+ PN+P VPID +SFHSEE   K
Subjt:  SKPSSKAPKIITTKAGRRKISPNIPIVPIDDISFHSEENVQK

A0A5D3DU39 Cell wall protein RBR3-like5.7e-0441.76Show/hide
Query:  IKTESFPQTNQFCFKKT--YASPNDSTEPSFE--NPV-------PKAKSSKPSSKAPKIITTKAGRRKISPNIPIVPIDDISFHSEENVQK
        +K ES P +     + +     PN   E S +  +PV       P+ KS K S++ PK+ITTK G RK+ PNIP +PID ISFH EE+V +
Subjt:  IKTESFPQTNQFCFKKT--YASPNDSTEPSFE--NPV-------PKAKSSKPSSKAPKIITTKAGRRKISPNIPIVPIDDISFHSEENVQK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAATACAAGGAAGTTCAAGTATAAGTCTCGGGGTTCTTTTTTAGCCATTTTGCATGTTTTTGTCTCCAGGAACAATGCTCCTACTCCACATTCCAAAAGGCTTAA
AATGATCCTTACTCGACGTCCTTTTGGAAAATCCATCAAAACAGAATCTTTTCCTCAAACTAATCAGTTTTGTTTTAAGAAAACATATGCATCTCCAAATGACTCTACTG
AACCTAGTTTTGAGAATCCAGTTCCAAAGGCTAAAAGTTCCAAACCATCATCCAAAGCTCCTAAAATCATTACTACTAAGGCAGGACGAAGAAAAATTTCTCCAAATATT
CCTATAGTTCCTATTGATGACATTTCTTTTCACAGTGAGGAAAATGTCCAAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGAATACAAGGAAGTTCAAGTATAAGTCTCGGGGTTCTTTTTTAGCCATTTTGCATGTTTTTGTCTCCAGGAACAATGCTCCTACTCCACATTCCAAAAGGCTTAA
AATGATCCTTACTCGACGTCCTTTTGGAAAATCCATCAAAACAGAATCTTTTCCTCAAACTAATCAGTTTTGTTTTAAGAAAACATATGCATCTCCAAATGACTCTACTG
AACCTAGTTTTGAGAATCCAGTTCCAAAGGCTAAAAGTTCCAAACCATCATCCAAAGCTCCTAAAATCATTACTACTAAGGCAGGACGAAGAAAAATTTCTCCAAATATT
CCTATAGTTCCTATTGATGACATTTCTTTTCACAGTGAGGAAAATGTCCAAAAATAG
Protein sequenceShow/hide protein sequence
MVNTRKFKYKSRGSFLAILHVFVSRNNAPTPHSKRLKMILTRRPFGKSIKTESFPQTNQFCFKKTYASPNDSTEPSFENPVPKAKSSKPSSKAPKIITTKAGRRKISPNI
PIVPIDDISFHSEENVQK