; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0001830 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0001830
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptiontranscription elongation factor B polypeptide 3
Genome locationchr11:9721467..9733967
RNA-Seq ExpressionPI0001830
SyntenyPI0001830
Gene Ontology termsGO:0006368 - transcription elongation from RNA polymerase II promoter (biological process)
GO:0006414 - translational elongation (biological process)
GO:0070449 - elongin complex (cellular component)
GO:0003746 - translation elongation factor activity (molecular function)
InterPro domainsIPR010684 - RNA polymerase II transcription factor SIII, subunit A


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ98274.1 transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. makuwa]1.8e-8797.18Show/hide
Query:  MHVEKSSEGRDLTPVTDKLWKRFYERQFGKESTTTVIERMRQKRVAFRWFQLYEAKMKDIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR
        MHVEKSSEGRDLTPVTDKLWK+FYERQFGKESTTTVIERMRQKRVAFRW QLYEAKM+DIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR
Subjt:  MHVEKSSEGRDLTPVTDKLWKRFYERQFGKESTTTVIERMRQKRVAFRWFQLYEAKMKDIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR

Query:  SFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKRW
        SFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDI STKKPMF GRESASTSKNTSTHMAKRW
Subjt:  SFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKRW

XP_004143189.1 transcription elongation factor B polypeptide 3 isoform X1 [Cucumis sativus]1.3e-8898.31Show/hide
Query:  MHVEKSSEGRDLTPVTDKLWKRFYERQFGKESTTTVIERMRQKRVAFRWFQLYEAKMKDIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR
        MHVEKSSEGRDLTPVTDKLWK+FYERQFGKESTTTVIERMRQKRVAFRW QLYEAKM+DIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR
Subjt:  MHVEKSSEGRDLTPVTDKLWKRFYERQFGKESTTTVIERMRQKRVAFRWFQLYEAKMKDIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR

Query:  SFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKRW
        SFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKRW
Subjt:  SFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKRW

XP_008456387.2 PREDICTED: transcription elongation factor B polypeptide 3 isoform X1 [Cucumis melo]3.4e-8697.16Show/hide
Query:  MHVEKSSEGRDLTPVTDKLWKRFYERQFGKESTTTVIERMRQKRVAFRWFQLYEAKMKDIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR
        MHVEKSSEGRDLTPVTDKLWK+FYERQFGKESTTTVIERMRQKRVAFRW QLYEAKM+DIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR
Subjt:  MHVEKSSEGRDLTPVTDKLWKRFYERQFGKESTTTVIERMRQKRVAFRWFQLYEAKMKDIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR

Query:  SFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKR
        SFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDI STKKPMF GRESASTSKNTSTHMAKR
Subjt:  SFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKR

XP_016901950.1 PREDICTED: transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo]3.4e-8697.16Show/hide
Query:  MHVEKSSEGRDLTPVTDKLWKRFYERQFGKESTTTVIERMRQKRVAFRWFQLYEAKMKDIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR
        MHVEKSSEGRDLTPVTDKLWK+FYERQFGKESTTTVIERMRQKRVAFRW QLYEAKM+DIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR
Subjt:  MHVEKSSEGRDLTPVTDKLWKRFYERQFGKESTTTVIERMRQKRVAFRWFQLYEAKMKDIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR

Query:  SFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKR
        SFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDI STKKPMF GRESASTSKNTSTHMAKR
Subjt:  SFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKR

XP_038900478.1 transcription elongation factor B polypeptide 3-like isoform X1 [Benincasa hispida]1.0e-8596.05Show/hide
Query:  MHVEKSSEGRDLTPVTDKLWKRFYERQFGKESTTTVIERMRQKRVAFRWFQLYEAKMKDIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR
        MHVEKSSEGRDLTP+TDKLWK+FYERQFGKESTTTVIERMRQKRVAFRW QLYEAKMKDIEKNESKAADRIKQSY KENARKQSRQIQICSKVPPSSNKR
Subjt:  MHVEKSSEGRDLTPVTDKLWKRFYERQFGKESTTTVIERMRQKRVAFRWFQLYEAKMKDIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR

Query:  SFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKRW
        SFGGS YGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDI STKKPMFSGRESASTSKNTST MAKRW
Subjt:  SFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKRW

TrEMBL top hitse value%identityAlignment
A0A1S3C4D6 transcription elongation factor B polypeptide 3 isoform X11.7e-8697.16Show/hide
Query:  MHVEKSSEGRDLTPVTDKLWKRFYERQFGKESTTTVIERMRQKRVAFRWFQLYEAKMKDIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR
        MHVEKSSEGRDLTPVTDKLWK+FYERQFGKESTTTVIERMRQKRVAFRW QLYEAKM+DIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR
Subjt:  MHVEKSSEGRDLTPVTDKLWKRFYERQFGKESTTTVIERMRQKRVAFRWFQLYEAKMKDIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR

Query:  SFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKR
        SFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDI STKKPMF GRESASTSKNTSTHMAKR
Subjt:  SFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKR

A0A1S4E1U0 transcription elongation factor B polypeptide 3 isoform X21.7e-8697.16Show/hide
Query:  MHVEKSSEGRDLTPVTDKLWKRFYERQFGKESTTTVIERMRQKRVAFRWFQLYEAKMKDIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR
        MHVEKSSEGRDLTPVTDKLWK+FYERQFGKESTTTVIERMRQKRVAFRW QLYEAKM+DIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR
Subjt:  MHVEKSSEGRDLTPVTDKLWKRFYERQFGKESTTTVIERMRQKRVAFRWFQLYEAKMKDIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR

Query:  SFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKR
        SFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDI STKKPMF GRESASTSKNTSTHMAKR
Subjt:  SFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKR

A0A5D3BGR1 Transcription elongation factor B polypeptide 3 isoform X28.8e-8897.18Show/hide
Query:  MHVEKSSEGRDLTPVTDKLWKRFYERQFGKESTTTVIERMRQKRVAFRWFQLYEAKMKDIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR
        MHVEKSSEGRDLTPVTDKLWK+FYERQFGKESTTTVIERMRQKRVAFRW QLYEAKM+DIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR
Subjt:  MHVEKSSEGRDLTPVTDKLWKRFYERQFGKESTTTVIERMRQKRVAFRWFQLYEAKMKDIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR

Query:  SFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKRW
        SFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDI STKKPMF GRESASTSKNTSTHMAKRW
Subjt:  SFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKRW

A0A6J1G8W9 transcription elongation factor B polypeptide 3 isoform X14.8e-7885.31Show/hide
Query:  MHVEKSSEGRDLTPVTDKLWKRFYERQFGKESTTTVIERMRQKRVAFRWFQLYEAKMKDIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR
        MHVEKSSEGRDLTPVTDKLWK+FYERQFG+E+T  V ERM++K+VAFRW QLYEAKMKDIEKNES+AADRIKQSYLKENARKQSRQIQICSKVPP+SNKR
Subjt:  MHVEKSSEGRDLTPVTDKLWKRFYERQFGKESTTTVIERMRQKRVAFRWFQLYEAKMKDIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR

Query:  SFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKRW
        SFG +GYG NV NTKNK+LKK+KIEVLQSQEMKNIKAWRRNAVQK+ DI STKKPMFSGR+SASTSK+T+THMA++W
Subjt:  SFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKRW

A0A6J1I1I3 transcription elongation factor B polypeptide 3 isoform X12.2e-7885.88Show/hide
Query:  MHVEKSSEGRDLTPVTDKLWKRFYERQFGKESTTTVIERMRQKRVAFRWFQLYEAKMKDIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR
        MHVEKSSEGRDLTPVTDKLWK+FYERQFG+EST  V ERM++K+VAFRW QLYEAKMKDIEKNES+AADRIKQSYLKENARKQSRQIQICSKVPP+SNKR
Subjt:  MHVEKSSEGRDLTPVTDKLWKRFYERQFGKESTTTVIERMRQKRVAFRWFQLYEAKMKDIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR

Query:  SFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKRW
        SFG +GYG NV NTKNK+LKK+KIEVLQSQEMKNIKAWRRNAVQK+ DI STKKPMFSGR+SASTSK+T+THMA++W
Subjt:  SFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKRW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G42780.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).1.0e-3245.56Show/hide
Query:  HVEKSSEGRDLTPVTDKLWKRFYERQFGKESTTTVIERMRQKRV-AFRWFQLYEAKMKDIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR
        H+E +++  DL+P+TDK WK FY++ +G+E    +IE +   +V  F+W  LYE K+  +++ E +   R+K+ Y  EN RKQSRQ ++CSK PPS  KR
Subjt:  HVEKSSEGRDLTPVTDKLWKRFYERQFGKESTTTVIERMRQKRV-AFRWFQLYEAKMKDIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR

Query:  SF-GGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKN
         F G S  GYN+ + K+ I+KKAKI++L+SQE+KN+ A +RN +QKS  IS+ KK   S   S STS++
Subjt:  SF-GGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKN

AT2G42780.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684).5.2e-3244.38Show/hide
Query:  HVEKSSEGRDLTPVTDKLWKRFYERQFGKESTTTVIERMRQKRV-AFRWFQLYEAKMKDIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR
        H+E +++  DL+P+TDK WK FY++ +G+E    +IE +   +V  F+W  LYE K+  +++ E +   R+K+ Y  EN RKQSRQ ++CSK PPS  KR
Subjt:  HVEKSSEGRDLTPVTDKLWKRFYERQFGKESTTTVIERMRQKRV-AFRWFQLYEAKMKDIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKR

Query:  SF-GGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKN
         F G S  GYN+ + K+ I+KKAKI++L+SQE+KN+ A +RN +QKS  IS+ K+   S   + STS++
Subjt:  SF-GGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGTGGAGAAGAGTTCAGAAGGAAGAGATCTTACTCCAGTAACTGATAAATTGTGGAAAAGATTCTATGAAAGACAGTTTGGTAAAGAAAGTACCACTACTGTAAT
TGAGAGGATGCGGCAAAAAAGAGTCGCATTTAGATGGTTTCAATTATATGAGGCGAAGATGAAGGACATTGAAAAGAATGAGAGCAAAGCTGCAGATCGGATAAAACAAA
GCTACCTAAAGGAAAATGCTCGAAAACAAAGTCGTCAAATACAGATTTGCAGCAAGGTTCCCCCATCGAGCAATAAGAGAAGCTTTGGAGGAAGCGGATATGGTTACAAT
GTGGCAAACACTAAGAACAAGATACTGAAGAAGGCAAAGATAGAAGTGCTTCAGAGTCAAGAGATGAAAAATATAAAAGCATGGAGAAGAAACGCGGTGCAGAAGAGTTC
TGATATATCTTCCACAAAAAAGCCAATGTTTTCTGGAAGGGAATCCGCTTCAACTTCTAAAAATACTTCCACTCATATGGCCAAAAGATGGTGTTGA
mRNA sequenceShow/hide mRNA sequence
GAACGAACAAGAAAAGAAAATAATAGAAAGGGAAATAAAAAATTCATAAACCATTATTTTCTTTAAAAAAAAATTATTTTGGGATTGTTTAATCAGCGGCGCATTGTAGC
CAGTTAGGGAAGAATATCGCAAAATTATGAGAAGGTAATCCGATGAGGATTATTCCAGGCCAATTCGTTCATTTCTAGTTCAACGATCGTTTCAACGATTCTCGTCTTCC
TCTTCTCAGACTGTCGCCTGGCAACCTGAGAAAGAAGATATGTACCGATTACGAAAATTCCTTCGTTGGTTGATCTTTGTGTTAACAAAGCTATAGATAACCTAAGGTTC
CTTGGGGATGTTGGCGAAACTGATATACATCTTTTAGAGCGTATTTTGCCACATTGCACAGTTGACCAATTAATGCATGTGGAGAAGAGTTCAGAAGGAAGAGATCTTAC
TCCAGTAACTGATAAATTGTGGAAAAGATTCTATGAAAGACAGTTTGGTAAAGAAAGTACCACTACTGTAATTGAGAGGATGCGGCAAAAAAGAGTCGCATTTAGATGGT
TTCAATTATATGAGGCGAAGATGAAGGACATTGAAAAGAATGAGAGCAAAGCTGCAGATCGGATAAAACAAAGCTACCTAAAGGAAAATGCTCGAAAACAAAGTCGTCAA
ATACAGATTTGCAGCAAGGTTCCCCCATCGAGCAATAAGAGAAGCTTTGGAGGAAGCGGATATGGTTACAATGTGGCAAACACTAAGAACAAGATACTGAAGAAGGCAAA
GATAGAAGTGCTTCAGAGTCAAGAGATGAAAAATATAAAAGCATGGAGAAGAAACGCGGTGCAGAAGAGTTCTGATATATCTTCCACAAAAAAGCCAATGTTTTCTGGAA
GGGAATCCGCTTCAACTTCTAAAAATACTTCCACTCATATGGCCAAAAGATGGTGTTGAACACAATTTGGGTGAAACTTACTCCTAACACGAATTCTCGGATATTACAAG
CTTAATATGAGGTTTTAGAGGCAAACCATAGCAAGAAACATAAGTTGGTGAAAATGATGCTAATGTTGCGGTGCTGTAAGGCAGTAGCTGCCAAATTTGAGCATTGCGTT
GTGGATGTACTCCCTAAAGCGCTATAGACTTTGACGGGAAGGACGCATGCATCGCAGTACCACTGCTCTTGGAACCTGAGAGCACTTCATCGATGCTACTGAGCGCCGCT
GAGCTACCCCCGTTTTCCTTATAACATGTCGTAGCAGCCCATTTTTGAATACATGATTTCACACAGCTTCTCTCATCTACTCTCAGATCTCCTCTGTATTCTTCTTCTCC
CATCCAATTGAGACCATTTTAGATAGTTTTATCATTGATTCAAGCATGTATCAAGACTAAGGTAATTCAATTTAGCTCAAGATTCAGGGATTTATTTTTTAATTTGTAAG
CTTATGAAATTATGAACAGAATTGTCTTGCTATTTTATGGTTTAATGAATTTTCTCCTTTGTTCTTGTCTTA
Protein sequenceShow/hide protein sequence
MHVEKSSEGRDLTPVTDKLWKRFYERQFGKESTTTVIERMRQKRVAFRWFQLYEAKMKDIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYN
VANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKRWC