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PI0001843 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0001843
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRibonuclease H
Genome locationchr10:5688696..5689406
RNA-Seq ExpressionPI0001843
SyntenyPI0001843
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]9.9e-6551.67Show/hide
Query:  MDKGWVKRIEKESIEACLPKKRTAEGFDPKAYKLMAKAGYDFTTRSELKSVKIFDERHELSPTQKKLQKQGYFIPNSRPGVRYKSSEPIRIIGKGKVKVA
        ++KG  K+IEK+ ++A LP++RT EGFDPKAYKLMAKAGYDFTTR+ELKSVKIFDER ELSPTQKKLQKQGY IPNSR G+ Y+SSEP+RI GKGK KVA
Subjt:  MDKGWVKRIEKESIEACLPKKRTAEGFDPKAYKLMAKAGYDFTTRSELKSVKIFDERHELSPTQKKLQKQGYFIPNSRPGVRYKSSEPIRIIGKGKVKVA

Query:  DTCHITVEECKDSNEDEKSESQRSSIFYRITSSTTRPSVFQRLSIPTREDKNEGSASDSTRLSTFHILNR----------TSVTQTSTFKRLSVSVKKDQ
        +TCHITVEE KDS E +K  SQRSS+F RI  S  RPSVFQR+S    +D N+ S   STRLS F  LN           T  T+ S FKRLSVSV +DQ
Subjt:  DTCHITVEECKDSNEDEKSESQRSSIFYRITSSTTRPSVFQRLSIPTREDKNEGSASDSTRLSTFHILNR----------TSVTQTSTFKRLSVSVKKDQ

Query:  --------------------------------------------------------------ADVVGCGHVTIEEAPDQGTLEEDVEAVLLSLEDGGHTT
                                                                       DV GC HVTIEE  D    EED EA  LSLEDGG +T
Subjt:  --------------------------------------------------------------ADVVGCGHVTIEEAPDQGTLEEDVEAVLLSLEDGGHTT
KAA0060609.1 uncharacterized protein E6C27_scaffold22G004870 [Cucumis melo var. makuwa]3.4e-6552Show/hide
Query:  MDKGWVKRIEKESIEACLPKKRTAEGFDPKAYKLMAKAGYDFTTRSELKSVKIFDERHELSPTQKKLQKQGYFIPNSRPGVRYKSSEPIRIIGKGKVKVA
        ++KG  K+IEK+ +EA LP++RT EGFDPKAYKLMAKAGYDFTTR+ELKSVKIFDER ELSPTQKKLQKQGY IPNSR G+ Y+SSEPIRI GKGK KV 
Subjt:  MDKGWVKRIEKESIEACLPKKRTAEGFDPKAYKLMAKAGYDFTTRSELKSVKIFDERHELSPTQKKLQKQGYFIPNSRPGVRYKSSEPIRIIGKGKVKVA

Query:  DTCHITVEECKDSNEDEKSESQRSSIFYRITSSTTRPSVFQRLSIPTREDKNEGSASDSTRLSTFHILNR----------TSVTQTSTFKRLSVSVKK--
        +TCHITVEE KDS E +K  SQRSS+F RI  S  RPSVFQR+S    +D N+ S   STRLS F  LN           TS T+ S FKRLSVSV K  
Subjt:  DTCHITVEECKDSNEDEKSESQRSSIFYRITSSTTRPSVFQRLSIPTREDKNEGSASDSTRLSTFHILNR----------TSVTQTSTFKRLSVSVKK--

Query:  ------------------------------------------------------------DQADVVGCGHVTIEEAPDQGTLEEDVEAVLLSLEDGGHTT
                                                                    D+ DV GC HVTIEE  +    EED EA  LSLEDGG +T
Subjt:  ------------------------------------------------------------DQADVVGCGHVTIEEAPDQGTLEEDVEAVLLSLEDGGHTT
TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]9.9e-6551.67Show/hide
Query:  MDKGWVKRIEKESIEACLPKKRTAEGFDPKAYKLMAKAGYDFTTRSELKSVKIFDERHELSPTQKKLQKQGYFIPNSRPGVRYKSSEPIRIIGKGKVKVA
        ++KG  K+IEK+ ++A LP++RT EGFDPKAYKLMAKAGYDFTTR+ELKSVKIFDER ELSPTQKKLQKQGY IPNSR G+ Y+SSEP+RI GKGK KVA
Subjt:  MDKGWVKRIEKESIEACLPKKRTAEGFDPKAYKLMAKAGYDFTTRSELKSVKIFDERHELSPTQKKLQKQGYFIPNSRPGVRYKSSEPIRIIGKGKVKVA

Query:  DTCHITVEECKDSNEDEKSESQRSSIFYRITSSTTRPSVFQRLSIPTREDKNEGSASDSTRLSTFHILNR----------TSVTQTSTFKRLSVSVKKDQ
        +TCHITVEE KDS E +K  SQRSS+F RI  S  RPSVFQR+S    +D N+ S   STRLS F  LN           T  T+ S FKRLSVSV +DQ
Subjt:  DTCHITVEECKDSNEDEKSESQRSSIFYRITSSTTRPSVFQRLSIPTREDKNEGSASDSTRLSTFHILNR----------TSVTQTSTFKRLSVSVKKDQ

Query:  --------------------------------------------------------------ADVVGCGHVTIEEAPDQGTLEEDVEAVLLSLEDGGHTT
                                                                       DV GC HVTIEE  D    EED EA  LSLEDGG +T
Subjt:  --------------------------------------------------------------ADVVGCGHVTIEEAPDQGTLEEDVEAVLLSLEDGGHTT
TYK06199.1 uncharacterized protein E5676_scaffold287G00570 [Cucumis melo var. makuwa]4.4e-6552Show/hide
Query:  MDKGWVKRIEKESIEACLPKKRTAEGFDPKAYKLMAKAGYDFTTRSELKSVKIFDERHELSPTQKKLQKQGYFIPNSRPGVRYKSSEPIRIIGKGKVKVA
        ++KG  K+IEK+ +EA LP++RT +GFDPKAYKLMAKAGYDFTTR+ELKSVKIFDER ELSPTQKKLQKQGY IPNSR G+ Y SSEP+RI GKGKVKVA
Subjt:  MDKGWVKRIEKESIEACLPKKRTAEGFDPKAYKLMAKAGYDFTTRSELKSVKIFDERHELSPTQKKLQKQGYFIPNSRPGVRYKSSEPIRIIGKGKVKVA

Query:  DTCHITVEECKDSNEDEKSESQRSSIFYRITSSTTRPSVFQRLSIPTREDKNEGSASDSTRLSTFHILNR----------TSVTQTSTFKRLSVSVKKDQ
        +TCHITVEE KDS E +K  SQRSS+F RI  S  RPSVFQR+S    +D N+ S   STRLS F  LN           T  T+ S FKRLSVSV +DQ
Subjt:  DTCHITVEECKDSNEDEKSESQRSSIFYRITSSTTRPSVFQRLSIPTREDKNEGSASDSTRLSTFHILNR----------TSVTQTSTFKRLSVSVKKDQ

Query:  --------------------------------------------------------------ADVVGCGHVTIEEAPDQGTLEEDVEAVLLSLEDGGHTT
                                                                       DV GC HVTIEE  D    EED EA  LSLEDGG +T
Subjt:  --------------------------------------------------------------ADVVGCGHVTIEEAPDQGTLEEDVEAVLLSLEDGGHTT
TYK18071.1 uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]9.9e-6551.67Show/hide
Query:  MDKGWVKRIEKESIEACLPKKRTAEGFDPKAYKLMAKAGYDFTTRSELKSVKIFDERHELSPTQKKLQKQGYFIPNSRPGVRYKSSEPIRIIGKGKVKVA
        ++KG  K+IEK+ ++A LP++RT EGFDPKAYKLMAKAGYDFTTR+ELKSVKIFDER ELSPTQKKLQKQGY IPNSR G+ Y+SSEP+RI GKGK KVA
Subjt:  MDKGWVKRIEKESIEACLPKKRTAEGFDPKAYKLMAKAGYDFTTRSELKSVKIFDERHELSPTQKKLQKQGYFIPNSRPGVRYKSSEPIRIIGKGKVKVA

Query:  DTCHITVEECKDSNEDEKSESQRSSIFYRITSSTTRPSVFQRLSIPTREDKNEGSASDSTRLSTFHILNR----------TSVTQTSTFKRLSVSVKKDQ
        +TCHITVEE KDS E +K  SQRSS+F RI  S  RPSVFQR+S    +D N+ S   STRLS F  LN           T  T+ S FKRLSVSV +DQ
Subjt:  DTCHITVEECKDSNEDEKSESQRSSIFYRITSSTTRPSVFQRLSIPTREDKNEGSASDSTRLSTFHILNR----------TSVTQTSTFKRLSVSVKKDQ

Query:  --------------------------------------------------------------ADVVGCGHVTIEEAPDQGTLEEDVEAVLLSLEDGGHTT
                                                                       DV GC HVTIEE  D    EED EA  LSLEDGG +T
Subjt:  --------------------------------------------------------------ADVVGCGHVTIEEAPDQGTLEEDVEAVLLSLEDGGHTT
TrEMBL top hitse value%identityAlignment
A0A5A7TZU9 Ribonuclease H4.8e-6551.67Show/hide
Query:  MDKGWVKRIEKESIEACLPKKRTAEGFDPKAYKLMAKAGYDFTTRSELKSVKIFDERHELSPTQKKLQKQGYFIPNSRPGVRYKSSEPIRIIGKGKVKVA
        ++KG  K+IEK+ ++A LP++RT EGFDPKAYKLMAKAGYDFTTR+ELKSVKIFDER ELSPTQKKLQKQGY IPNSR G+ Y+SSEP+RI GKGK KVA
Subjt:  MDKGWVKRIEKESIEACLPKKRTAEGFDPKAYKLMAKAGYDFTTRSELKSVKIFDERHELSPTQKKLQKQGYFIPNSRPGVRYKSSEPIRIIGKGKVKVA

Query:  DTCHITVEECKDSNEDEKSESQRSSIFYRITSSTTRPSVFQRLSIPTREDKNEGSASDSTRLSTFHILNR----------TSVTQTSTFKRLSVSVKKDQ
        +TCHITVEE KDS E +K  SQRSS+F RI  S  RPSVFQR+S    +D N+ S   STRLS F  LN           T  T+ S FKRLSVSV +DQ
Subjt:  DTCHITVEECKDSNEDEKSESQRSSIFYRITSSTTRPSVFQRLSIPTREDKNEGSASDSTRLSTFHILNR----------TSVTQTSTFKRLSVSVKKDQ

Query:  --------------------------------------------------------------ADVVGCGHVTIEEAPDQGTLEEDVEAVLLSLEDGGHTT
                                                                       DV GC HVTIEE  D    EED EA  LSLEDGG +T
Subjt:  --------------------------------------------------------------ADVVGCGHVTIEEAPDQGTLEEDVEAVLLSLEDGGHTT
A0A5A7V4F2 Reverse transcriptase domain-containing protein1.6e-6552Show/hide
Query:  MDKGWVKRIEKESIEACLPKKRTAEGFDPKAYKLMAKAGYDFTTRSELKSVKIFDERHELSPTQKKLQKQGYFIPNSRPGVRYKSSEPIRIIGKGKVKVA
        ++KG  K+IEK+ +EA LP++RT EGFDPKAYKLMAKAGYDFTTR+ELKSVKIFDER ELSPTQKKLQKQGY IPNSR G+ Y+SSEPIRI GKGK KV 
Subjt:  MDKGWVKRIEKESIEACLPKKRTAEGFDPKAYKLMAKAGYDFTTRSELKSVKIFDERHELSPTQKKLQKQGYFIPNSRPGVRYKSSEPIRIIGKGKVKVA

Query:  DTCHITVEECKDSNEDEKSESQRSSIFYRITSSTTRPSVFQRLSIPTREDKNEGSASDSTRLSTFHILNR----------TSVTQTSTFKRLSVSVKK--
        +TCHITVEE KDS E +K  SQRSS+F RI  S  RPSVFQR+S    +D N+ S   STRLS F  LN           TS T+ S FKRLSVSV K  
Subjt:  DTCHITVEECKDSNEDEKSESQRSSIFYRITSSTTRPSVFQRLSIPTREDKNEGSASDSTRLSTFHILNR----------TSVTQTSTFKRLSVSVKK--

Query:  ------------------------------------------------------------DQADVVGCGHVTIEEAPDQGTLEEDVEAVLLSLEDGGHTT
                                                                    D+ DV GC HVTIEE  +    EED EA  LSLEDGG +T
Subjt:  ------------------------------------------------------------DQADVVGCGHVTIEEAPDQGTLEEDVEAVLLSLEDGGHTT
A0A5D3BIH8 Uncharacterized protein4.8e-6551.67Show/hide
Query:  MDKGWVKRIEKESIEACLPKKRTAEGFDPKAYKLMAKAGYDFTTRSELKSVKIFDERHELSPTQKKLQKQGYFIPNSRPGVRYKSSEPIRIIGKGKVKVA
        ++KG  K+IEK+ ++A LP++RT EGFDPKAYKLMAKAGYDFTTR+ELKSVKIFDER ELSPTQKKLQKQGY IPNSR G+ Y+SSEP+RI GKGK KVA
Subjt:  MDKGWVKRIEKESIEACLPKKRTAEGFDPKAYKLMAKAGYDFTTRSELKSVKIFDERHELSPTQKKLQKQGYFIPNSRPGVRYKSSEPIRIIGKGKVKVA

Query:  DTCHITVEECKDSNEDEKSESQRSSIFYRITSSTTRPSVFQRLSIPTREDKNEGSASDSTRLSTFHILNR----------TSVTQTSTFKRLSVSVKKDQ
        +TCHITVEE KDS E +K  SQRSS+F RI  S  RPSVFQR+S    +D N+ S   STRLS F  LN           T  T+ S FKRLSVSV +DQ
Subjt:  DTCHITVEECKDSNEDEKSESQRSSIFYRITSSTTRPSVFQRLSIPTREDKNEGSASDSTRLSTFHILNR----------TSVTQTSTFKRLSVSVKKDQ

Query:  --------------------------------------------------------------ADVVGCGHVTIEEAPDQGTLEEDVEAVLLSLEDGGHTT
                                                                       DV GC HVTIEE  D    EED EA  LSLEDGG +T
Subjt:  --------------------------------------------------------------ADVVGCGHVTIEEAPDQGTLEEDVEAVLLSLEDGGHTT
A0A5D3C783 Ribonuclease H2.1e-6552Show/hide
Query:  MDKGWVKRIEKESIEACLPKKRTAEGFDPKAYKLMAKAGYDFTTRSELKSVKIFDERHELSPTQKKLQKQGYFIPNSRPGVRYKSSEPIRIIGKGKVKVA
        ++KG  K+IEK+ +EA LP++RT +GFDPKAYKLMAKAGYDFTTR+ELKSVKIFDER ELSPTQKKLQKQGY IPNSR G+ Y SSEP+RI GKGKVKVA
Subjt:  MDKGWVKRIEKESIEACLPKKRTAEGFDPKAYKLMAKAGYDFTTRSELKSVKIFDERHELSPTQKKLQKQGYFIPNSRPGVRYKSSEPIRIIGKGKVKVA

Query:  DTCHITVEECKDSNEDEKSESQRSSIFYRITSSTTRPSVFQRLSIPTREDKNEGSASDSTRLSTFHILNR----------TSVTQTSTFKRLSVSVKKDQ
        +TCHITVEE KDS E +K  SQRSS+F RI  S  RPSVFQR+S    +D N+ S   STRLS F  LN           T  T+ S FKRLSVSV +DQ
Subjt:  DTCHITVEECKDSNEDEKSESQRSSIFYRITSSTTRPSVFQRLSIPTREDKNEGSASDSTRLSTFHILNR----------TSVTQTSTFKRLSVSVKKDQ

Query:  --------------------------------------------------------------ADVVGCGHVTIEEAPDQGTLEEDVEAVLLSLEDGGHTT
                                                                       DV GC HVTIEE  D    EED EA  LSLEDGG +T
Subjt:  --------------------------------------------------------------ADVVGCGHVTIEEAPDQGTLEEDVEAVLLSLEDGGHTT
A0A5D3D1E5 Ribonuclease H4.8e-6551.67Show/hide
Query:  MDKGWVKRIEKESIEACLPKKRTAEGFDPKAYKLMAKAGYDFTTRSELKSVKIFDERHELSPTQKKLQKQGYFIPNSRPGVRYKSSEPIRIIGKGKVKVA
        ++KG  K+IEK+ ++A LP++RT EGFDPKAYKLMAKAGYDFTTR+ELKSVKIFDER ELSPTQKKLQKQGY IPNSR G+ Y+SSEP+RI GKGK KVA
Subjt:  MDKGWVKRIEKESIEACLPKKRTAEGFDPKAYKLMAKAGYDFTTRSELKSVKIFDERHELSPTQKKLQKQGYFIPNSRPGVRYKSSEPIRIIGKGKVKVA

Query:  DTCHITVEECKDSNEDEKSESQRSSIFYRITSSTTRPSVFQRLSIPTREDKNEGSASDSTRLSTFHILNR----------TSVTQTSTFKRLSVSVKKDQ
        +TCHITVEE KDS E +K  SQRSS+F RI  S  RPSVFQR+S    +D N+ S   STRLS F  LN           T  T+ S FKRLSVSV +DQ
Subjt:  DTCHITVEECKDSNEDEKSESQRSSIFYRITSSTTRPSVFQRLSIPTREDKNEGSASDSTRLSTFHILNR----------TSVTQTSTFKRLSVSVKKDQ

Query:  --------------------------------------------------------------ADVVGCGHVTIEEAPDQGTLEEDVEAVLLSLEDGGHTT
                                                                       DV GC HVTIEE  D    EED EA  LSLEDGG +T
Subjt:  --------------------------------------------------------------ADVVGCGHVTIEEAPDQGTLEEDVEAVLLSLEDGGHTT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAAAGGATGGGTGAAAAGAATTGAGAAAGAGAGCATAGAAGCATGCCTTCCAAAAAAACGAACGGCGGAGGGATTTGACCCCAAAGCATATAAGTTGATGGCAAA
GGCGGGTTATGACTTTACAACCCGTAGTGAGCTTAAAAGTGTGAAGATATTTGATGAAAGGCATGAGCTTTCGCCTACGCAAAAAAAGCTTCAAAAGCAAGGATATTTTA
TACCTAATTCAAGACCAGGAGTTAGGTATAAGTCTTCCGAGCCAATTCGAATAATTGGTAAAGGAAAAGTAAAAGTTGCTGACACATGCCACATTACTGTTGAAGAATGC
AAAGATTCTAACGAAGACGAAAAAAGCGAAAGTCAAAGGAGTTCTATTTTTTATCGCATCACCTCTTCTACTACACGCCCTTCAGTTTTCCAGAGGTTGAGTATACCGAC
AAGGGAGGACAAAAATGAAGGGTCAGCTTCTGATTCCACCCGACTTTCTACCTTTCATATATTAAATAGAACTTCGGTTACGCAAACCTCTACCTTCAAAAGGTTAAGTG
TGTCGGTGAAAAAAGACCAAGCAGATGTGGTAGGTTGTGGCCATGTCACGATAGAAGAGGCACCCGATCAGGGGACATTAGAAGAAGATGTTGAAGCTGTCTTGTTGTCA
CTTGAAGATGGAGGCCACACTACAACAATTATGACTTTCCATAACATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATAAAGGATGGGTGAAAAGAATTGAGAAAGAGAGCATAGAAGCATGCCTTCCAAAAAAACGAACGGCGGAGGGATTTGACCCCAAAGCATATAAGTTGATGGCAAA
GGCGGGTTATGACTTTACAACCCGTAGTGAGCTTAAAAGTGTGAAGATATTTGATGAAAGGCATGAGCTTTCGCCTACGCAAAAAAAGCTTCAAAAGCAAGGATATTTTA
TACCTAATTCAAGACCAGGAGTTAGGTATAAGTCTTCCGAGCCAATTCGAATAATTGGTAAAGGAAAAGTAAAAGTTGCTGACACATGCCACATTACTGTTGAAGAATGC
AAAGATTCTAACGAAGACGAAAAAAGCGAAAGTCAAAGGAGTTCTATTTTTTATCGCATCACCTCTTCTACTACACGCCCTTCAGTTTTCCAGAGGTTGAGTATACCGAC
AAGGGAGGACAAAAATGAAGGGTCAGCTTCTGATTCCACCCGACTTTCTACCTTTCATATATTAAATAGAACTTCGGTTACGCAAACCTCTACCTTCAAAAGGTTAAGTG
TGTCGGTGAAAAAAGACCAAGCAGATGTGGTAGGTTGTGGCCATGTCACGATAGAAGAGGCACCCGATCAGGGGACATTAGAAGAAGATGTTGAAGCTGTCTTGTTGTCA
CTTGAAGATGGAGGCCACACTACAACAATTATGACTTTCCATAACATCTAA
Protein sequenceShow/hide protein sequence
MDKGWVKRIEKESIEACLPKKRTAEGFDPKAYKLMAKAGYDFTTRSELKSVKIFDERHELSPTQKKLQKQGYFIPNSRPGVRYKSSEPIRIIGKGKVKVADTCHITVEEC
KDSNEDEKSESQRSSIFYRITSSTTRPSVFQRLSIPTREDKNEGSASDSTRLSTFHILNRTSVTQTSTFKRLSVSVKKDQADVVGCGHVTIEEAPDQGTLEEDVEAVLLS
LEDGGHTTTIMTFHNI