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PI0001850 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0001850
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr11:16326122..16326382
RNA-Seq ExpressionPI0001850
SyntenyPI0001850
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056624.1 hypothetical protein E6C27_scaffold288G001440 [Cucumis melo var. makuwa]1.2e-2376.47Show/hide
Query:  MEKSLTQLHGMLKTAKLNIKSNPEVLMVLKGKNPKKMERDQGKGSGKVVVKTSKVDAYAAP--RPKPKELKPPKEGECCTLRKLD
        +EKSLTQLHGMLKTAKLNIK + EVLMV KGKNPKK ERDQGKG  KVVVK SKVDA A P  RPKPKE KPPKEGEC   +K++
Subjt:  MEKSLTQLHGMLKTAKLNIKSNPEVLMVLKGKNPKKMERDQGKGSGKVVVKTSKVDAYAAP--RPKPKELKPPKEGECCTLRKLD

KAA0066400.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.0e-1976.32Show/hide
Query:  MEKSLTQLHGMLKTAKLNIKSNPEVLMVLKGKNPKKMERDQGKGSGKVVVKTSKVDAYAAPR--PKPKELKPPKEG
        ME+SLT+LH MLK A+LNIKS+ EVLMV KGKNPKK ERDQG G GKVVVK S+VDA  APR  PKPKE KPPKEG
Subjt:  MEKSLTQLHGMLKTAKLNIKSNPEVLMVLKGKNPKKMERDQGKGSGKVVVKTSKVDAYAAPR--PKPKELKPPKEG

KAA0066495.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.2e-2171.43Show/hide
Query:  MEKSLTQLHGMLKTAKLNIKSNPEVLMVLKGKNPKKMERDQGKGSGKVVVKTSKVDAYAAPRP--KPKELKPPKEGECCTLRKL
        M+KSLT+LHGMLKT KLNIKS+ +VLM+ KGKNPKK E DQGKG GKV VKTSKVDA+ APRP  K KE KPPKEGE    +K+
Subjt:  MEKSLTQLHGMLKTAKLNIKSNPEVLMVLKGKNPKKMERDQGKGSGKVVVKTSKVDAYAAPRP--KPKELKPPKEGECCTLRKL

TYK07553.1 putative retrotransposon protein [Cucumis melo var. makuwa]1.6e-1775Show/hide
Query:  TAKLNIKSNPEVLMVLKGKNPKKMERDQGKGSGKVVVKTSKVDAYAA--PRPKPKELKPPKEGECCTLRKLD
        TAKLNIKS+ EVLMV KGKNPKK ERDQGKG  KVVVK SKVDA A   PRPKPKE KPPKEGEC   +K++
Subjt:  TAKLNIKSNPEVLMVLKGKNPKKMERDQGKGSGKVVVKTSKVDAYAA--PRPKPKELKPPKEGECCTLRKLD

XP_016901775.1 PREDICTED: uncharacterized protein LOC107991397 [Cucumis melo]9.6e-1864.29Show/hide
Query:  MEKSLTQLHGMLKTAKLNIKSNPEVLMVLKGKNPKKMERDQGKGSGKVVVKTSKVDAYAAPRP--KPKELKPPKEGECCTLRKL
        M+KSL++LHGM K AKLNIKSN E+LM+ KGKNPK   +DQGKG+ KVVVKTSKVD + AP+P  KPK+ KP KE EC   +K+
Subjt:  MEKSLTQLHGMLKTAKLNIKSNPEVLMVLKGKNPKKMERDQGKGSGKVVVKTSKVDAYAAPRP--KPKELKPPKEGECCTLRKL

TrEMBL top hitse value%identityAlignment
A0A1S4E1A7 uncharacterized protein LOC1079913974.6e-1864.29Show/hide
Query:  MEKSLTQLHGMLKTAKLNIKSNPEVLMVLKGKNPKKMERDQGKGSGKVVVKTSKVDAYAAPRP--KPKELKPPKEGECCTLRKL
        M+KSL++LHGM K AKLNIKSN E+LM+ KGKNPK   +DQGKG+ KVVVKTSKVD + AP+P  KPK+ KP KE EC   +K+
Subjt:  MEKSLTQLHGMLKTAKLNIKSNPEVLMVLKGKNPKKMERDQGKGSGKVVVKTSKVDAYAAPRP--KPKELKPPKEGECCTLRKL

A0A5A7UN47 Uncharacterized protein5.7e-2476.47Show/hide
Query:  MEKSLTQLHGMLKTAKLNIKSNPEVLMVLKGKNPKKMERDQGKGSGKVVVKTSKVDAYAAP--RPKPKELKPPKEGECCTLRKLD
        +EKSLTQLHGMLKTAKLNIK + EVLMV KGKNPKK ERDQGKG  KVVVK SKVDA A P  RPKPKE KPPKEGEC   +K++
Subjt:  MEKSLTQLHGMLKTAKLNIKSNPEVLMVLKGKNPKKMERDQGKGSGKVVVKTSKVDAYAAP--RPKPKELKPPKEGECCTLRKLD

A0A5A7VL77 Retrovirus-related Pol polyprotein from transposon TNT 1-942.0e-2171.43Show/hide
Query:  MEKSLTQLHGMLKTAKLNIKSNPEVLMVLKGKNPKKMERDQGKGSGKVVVKTSKVDAYAAPRP--KPKELKPPKEGECCTLRKL
        M+KSLT+LHGMLKT KLNIKS+ +VLM+ KGKNPKK E DQGKG GKV VKTSKVDA+ APRP  K KE KPPKEGE    +K+
Subjt:  MEKSLTQLHGMLKTAKLNIKSNPEVLMVLKGKNPKKMERDQGKGSGKVVVKTSKVDAYAAPRP--KPKELKPPKEGECCTLRKL

A0A5D3BP05 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-1976.32Show/hide
Query:  MEKSLTQLHGMLKTAKLNIKSNPEVLMVLKGKNPKKMERDQGKGSGKVVVKTSKVDAYAAPR--PKPKELKPPKEG
        ME+SLT+LH MLK A+LNIKS+ EVLMV KGKNPKK ERDQG G GKVVVK S+VDA  APR  PKPKE KPPKEG
Subjt:  MEKSLTQLHGMLKTAKLNIKSNPEVLMVLKGKNPKKMERDQGKGSGKVVVKTSKVDAYAAPR--PKPKELKPPKEG

A0A5D3CZL7 Putative polyprotein4.6e-1864.29Show/hide
Query:  MEKSLTQLHGMLKTAKLNIKSNPEVLMVLKGKNPKKMERDQGKGSGKVVVKTSKVDAYAAPRP--KPKELKPPKEGECCTLRKL
        M+KSL++LHGM K AKLNIKSN E+LM+ KGKNPK   +DQGKG+ KVVVKTSKVD + AP+P  KPK+ KP KE EC   +K+
Subjt:  MEKSLTQLHGMLKTAKLNIKSNPEVLMVLKGKNPKKMERDQGKGSGKVVVKTSKVDAYAAPRP--KPKELKPPKEGECCTLRKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAAAGTTTGACTCAGCTGCATGGAATGCTAAAGACTGCTAAGTTGAACATCAAGTCCAATCCTGAGGTTTTGATGGTGCTAAAAGGGAAGAATCCCAAGAAAAT
GGAAAGAGATCAAGGAAAGGGTAGTGGCAAAGTTGTTGTGAAGACATCAAAAGTTGATGCTTATGCTGCACCTAGGCCCAAACCTAAAGAGCTTAAACCACCCAAGGAAG
GAGAATGTTGCACTTTAAGGAAATTGGACATTGAAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAAAGTTTGACTCAGCTGCATGGAATGCTAAAGACTGCTAAGTTGAACATCAAGTCCAATCCTGAGGTTTTGATGGTGCTAAAAGGGAAGAATCCCAAGAAAAT
GGAAAGAGATCAAGGAAAGGGTAGTGGCAAAGTTGTTGTGAAGACATCAAAAGTTGATGCTTATGCTGCACCTAGGCCCAAACCTAAAGAGCTTAAACCACCCAAGGAAG
GAGAATGTTGCACTTTAAGGAAATTGGACATTGAAAAATGA
Protein sequenceShow/hide protein sequence
MEKSLTQLHGMLKTAKLNIKSNPEVLMVLKGKNPKKMERDQGKGSGKVVVKTSKVDAYAAPRPKPKELKPPKEGECCTLRKLDIEK