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PI0001909 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0001909
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionPhotosystem I assembly protein Ycf3
Genome locationtig00003626:880527..881544
RNA-Seq ExpressionPI0001909
SyntenyPI0001909
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
GO:0042651 - thylakoid membrane (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5222305.1 photosystem assembly related protein [Salix suchowensis]3.4e-3373.39Show/hide
Query:  EGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNLPAYSDRGEEAIRQGDSEIAEAWFNQA
        +GN AEALQNYY AMRLEIDPYDR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HYV+L AYSDRGE+AIRQGDSEIAEAWFNQA
Subjt:  EGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNLPAYSDRGEEAIRQGDSEIAEAWFNQA

Query:  AEYWKQAIA
        AEYWKQAIA
Subjt:  AEYWKQAIA

YP_009566565.1 hypothetical chloroplast RF3 [Balanocarpus heimii]7.6e-3372.81Show/hide
Query:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNLPAYSDRGEEAIRQGDSEIAEA
        MSAQSEGN AEALQNYY AMRLEIDPYDR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HY    AYSDRGE+AIRQGDSEIAEA
Subjt:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNLPAYSDRGEEAIRQGDSEIAEA

Query:  WFNQAAEYWKQAIA
        WF+QAAEYWKQAIA
Subjt:  WFNQAAEYWKQAIA

YP_009750678.1 hypothetical chloroplast RF3 [Dipterocarpus turbinatus]7.6e-3372.81Show/hide
Query:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNLPAYSDRGEEAIRQGDSEIAEA
        MSAQSEGN AEALQNYY AMRLEIDPYDR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HY    AYSDRGE+AIRQGDSEIAEA
Subjt:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNLPAYSDRGEEAIRQGDSEIAEA

Query:  WFNQAAEYWKQAIA
        WF+QAAEYWKQAIA
Subjt:  WFNQAAEYWKQAIA

YP_010035291.1 photosystem I assembly protein Ycf4 [Terminalia neotaliala]5.2e-3472.81Show/hide
Query:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNLPAYSDRGEEAIRQGDSEIAEA
        MSAQSEGN AEALQNYY AMRLEIDPYDR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HYV    YSDRGE+AIRQGDSEIAEA
Subjt:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNLPAYSDRGEEAIRQGDSEIAEA

Query:  WFNQAAEYWKQAIA
        WF+QAAEYWKQAIA
Subjt:  WFNQAAEYWKQAIA

YP_010045065.1 hypothetical chloroplast RF3 [Wrightia laevis]1.8e-3473.91Show/hide
Query:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNL-PAYSDRGEEAIRQGDSEIAE
        MSAQSEGN AEALQNYY AMRLEIDPYDR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HYV L P YSDRGE+AIRQGDSEIAE
Subjt:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNL-PAYSDRGEEAIRQGDSEIAE

Query:  AWFNQAAEYWKQAIA
        AWF+QAAEYWKQAIA
Subjt:  AWFNQAAEYWKQAIA

TrEMBL top hitse value%identityAlignment
A0A3P6HIA3 TPR_REGION domain-containing protein4.8e-3371.68Show/hide
Query:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNLPAYSDRGEEAIRQGDSEIAEA
        MSAQSEGN AEALQNYY AMRLEIDPYDR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HY   PAYSDRGE+AI+QGDSE+AEA
Subjt:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNLPAYSDRGEEAIRQGDSEIAEA

Query:  WFNQAAEYWKQAI
        WF QAAEYWKQAI
Subjt:  WFNQAAEYWKQAI

A0A411GXN2 Photosystem I assembly protein Ycf33.7e-3372.81Show/hide
Query:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNLPAYSDRGEEAIRQGDSEIAEA
        MSAQSEGN AEALQNYY AMRLEIDPYDR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HY    AYSDRGE+AIRQGDSEIAEA
Subjt:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNLPAYSDRGEEAIRQGDSEIAEA

Query:  WFNQAAEYWKQAIA
        WF+QAAEYWKQAIA
Subjt:  WFNQAAEYWKQAIA

A0A6G7S8P3 Photosystem I assembly protein Ycf33.7e-3372.81Show/hide
Query:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNLPAYSDRGEEAIRQGDSEIAEA
        MSAQSEGN AEALQNYY AMRLEIDPYDR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HY    AYSDRGE+AIRQGDSEIAEA
Subjt:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNLPAYSDRGEEAIRQGDSEIAEA

Query:  WFNQAAEYWKQAIA
        WF+QAAEYWKQAIA
Subjt:  WFNQAAEYWKQAIA

A0A7N2N7U5 Uncharacterized protein6.2e-3368.03Show/hide
Query:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYV---------NLPAYSDRGEEAIR
        MSAQSEGN AEALQNYY AMRLEIDPYDR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HY          N PAYSDRGE+AIR
Subjt:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYV---------NLPAYSDRGEEAIR

Query:  QGDSEIAEAWFNQAAEYWKQAI
        QG+SEIAEAWF+QAAEYWKQAI
Subjt:  QGDSEIAEAWFNQAAEYWKQAI

A0A7S9H3N8 Hypothetical chloroplast RF38.7e-3573.91Show/hide
Query:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNL-PAYSDRGEEAIRQGDSEIAE
        MSAQSEGN AEALQNYY AMRLEIDPYDR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HYV L P YSDRGE+AIRQGDSEIAE
Subjt:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNL-PAYSDRGEEAIRQGDSEIAE

Query:  AWFNQAAEYWKQAIA
        AWF+QAAEYWKQAIA
Subjt:  AWFNQAAEYWKQAIA

SwissProt top hitse value%identityAlignment
A4GG96 Photosystem I assembly protein Ycf36.0e-3368.42Show/hide
Query:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNLPAYSDRGEEAIRQGDSEIAEA
        MSAQSEGN AEALQNYY AMRLEIDPYDR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HY        RGE+AIRQGDSE+AE+
Subjt:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNLPAYSDRGEEAIRQGDSEIAEA

Query:  WFNQAAEYWKQAIA
        WFNQAAEYWKQAIA
Subjt:  WFNQAAEYWKQAIA

Q06FW6 Photosystem I assembly protein Ycf36.0e-3369.3Show/hide
Query:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNLPAYSDRGEEAIRQGDSEIAEA
        MSAQSEGN AEALQNYY AMRLE+DPYDR   +  I  +          +EYYFRALE NPFLPQALNNMAVI HY        RGE+AIRQGDSEIAEA
Subjt:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNLPAYSDRGEEAIRQGDSEIAEA

Query:  WFNQAAEYWKQAIA
        WF+QAAEYWKQAIA
Subjt:  WFNQAAEYWKQAIA

Q09MH7 Photosystem I assembly protein Ycf32.7e-3369.3Show/hide
Query:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNLPAYSDRGEEAIRQGDSEIAEA
        MSAQSEGN AEALQNYY AMRLEIDPYDR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HY        RGE+A+RQGDSEIAEA
Subjt:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNLPAYSDRGEEAIRQGDSEIAEA

Query:  WFNQAAEYWKQAIA
        WFNQAAEYWKQAIA
Subjt:  WFNQAAEYWKQAIA

Q2PMU4 Photosystem I assembly protein Ycf36.0e-3368.42Show/hide
Query:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNLPAYSDRGEEAIRQGDSEIAEA
        MSAQSEGN AEALQNYY AMRLEIDPYDR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HY        RGE+AIRQGDSE+AE+
Subjt:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNLPAYSDRGEEAIRQGDSEIAEA

Query:  WFNQAAEYWKQAIA
        WFNQAAEYWKQAIA
Subjt:  WFNQAAEYWKQAIA

Q4VZH4 Photosystem I assembly protein Ycf32.1e-3370.18Show/hide
Query:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNLPAYSDRGEEAIRQGDSEIAEA
        MSAQSEGN AEALQNYY AMRLEIDPYDR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HY        RGE+AIRQGDSEIAEA
Subjt:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNLPAYSDRGEEAIRQGDSEIAEA

Query:  WFNQAAEYWKQAIA
        WFNQAAEYWKQAIA
Subjt:  WFNQAAEYWKQAIA

Arabidopsis top hitse value%identityAlignment
ATCG00360.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.8e-3267.26Show/hide
Query:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNLPAYSDRGEEAIRQGDSEIAEA
        MSAQSEGN AEALQNYY AMRLEIDPYDR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HY        RGE+AI+QGDSE+AEA
Subjt:  MSAQSEGNNAEALQNYYSAMRLEIDPYDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYVNLPAYSDRGEEAIRQGDSEIAEA

Query:  WFNQAAEYWKQAI
        WF QAAEYWKQAI
Subjt:  WFNQAAEYWKQAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGCTCAATCCGAAGGAAATAATGCGGAAGCTCTACAGAATTATTATTCAGCTATGCGACTAGAAATCGATCCCTATGATCGAAAAGTTCAAAGAATATTGAGAGT
AGAAATGGAATATTATTTTCGGGCACTAGAACTCAACCCCTTCTTACCACAAGCTTTGAATAATATGGCTGTGATCTCTCATTACGTGAATTTACCTGCCTATTCCGACC
GGGGAGAAGAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACAAGCTATAGCGTCCCGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGCTCAATCCGAAGGAAATAATGCGGAAGCTCTACAGAATTATTATTCAGCTATGCGACTAGAAATCGATCCCTATGATCGAAAAGTTCAAAGAATATTGAGAGT
AGAAATGGAATATTATTTTCGGGCACTAGAACTCAACCCCTTCTTACCACAAGCTTTGAATAATATGGCTGTGATCTCTCATTACGTGAATTTACCTGCCTATTCCGACC
GGGGAGAAGAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACAAGCTATAGCGTCCCGGTAA
Protein sequenceShow/hide protein sequence
MSAQSEGNNAEALQNYYSAMRLEIDPYDRKVQRILRVEMEYYFRALELNPFLPQALNNMAVISHYVNLPAYSDRGEEAIRQGDSEIAEAWFNQAAEYWKQAIASR