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PI0001938 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0001938
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr09:11737187..11738671
RNA-Seq ExpressionPI0001938
SyntenyPI0001938
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066406.1 uncharacterized protein E6C27_scaffold21G004820 [Cucumis melo var. makuwa]8.4e-2030.66Show/hide
Query:  KFFNRNVHEDVEEQCPPLRDLIFVLTSGARSPWPCKGQLPTIVLSVKYMLLHKIEITNWCTYSHKSGLCISLANFFYHIGTRSQFKYGVFVLNQIKLHIG
        +F    V  D    CP    L  VL+ G  S WP  G +P   LSVKY +LHKI I NW   SH S +  +L  F Y I    +   G F+ NQ+  H+G
Subjt:  KFFNRNVHEDVEEQCPPLRDLIFVLTSGARSPWPCKGQLPTIVLSVKYMLLHKIEITNWCTYSHKSGLCISLANFFYHIGTRSQFKYGVFVLNQIKLHIG

Query:  LKTFKLSICYPWLICEILFTQKPDMLSTSEPMGPSPSFSSISSKLLQEKYVPNLD----PSSLARPIDEPSW------FFIESPFGSRLLLLLFLKARGI
            K+ I +P L   +L      +L+ S+  GP P   ++S +L Q  +VP++D    P+   R  D   W      F+++    +R++  L  ++R +
Subjt:  LKTFKLSICYPWLICEILFTQKPDMLSTSEPMGPSPSFSSISSKLLQEKYVPNLD----PSSLARPIDEPSW------FFIESPFGSRLLLLLFLKARGI

Query:  DLLLQKLKEQKV
           +  L E+++
Subjt:  DLLLQKLKEQKV

TYK00879.1 uncharacterized protein E5676_scaffold602G00380 [Cucumis melo var. makuwa]8.4e-2030.66Show/hide
Query:  KFFNRNVHEDVEEQCPPLRDLIFVLTSGARSPWPCKGQLPTIVLSVKYMLLHKIEITNWCTYSHKSGLCISLANFFYHIGTRSQFKYGVFVLNQIKLHIG
        +F    V  D    CP    L  VL+ G  S WP  G +P   LSVKY +LHKI I NW   SH S +  +L  F Y I    +   G F+ NQ+  H+G
Subjt:  KFFNRNVHEDVEEQCPPLRDLIFVLTSGARSPWPCKGQLPTIVLSVKYMLLHKIEITNWCTYSHKSGLCISLANFFYHIGTRSQFKYGVFVLNQIKLHIG

Query:  LKTFKLSICYPWLICEILFTQKPDMLSTSEPMGPSPSFSSISSKLLQEKYVPNLD----PSSLARPIDEPSW------FFIESPFGSRLLLLLFLKARGI
            K+ I +P L   +L      +L+ S+  GP P   ++S +L Q  +VP++D    P+   R  D   W      F+++    +R++  L  ++R +
Subjt:  LKTFKLSICYPWLICEILFTQKPDMLSTSEPMGPSPSFSSISSKLLQEKYVPNLD----PSSLARPIDEPSW------FFIESPFGSRLLLLLFLKARGI

Query:  DLLLQKLKEQKV
           +  L E+++
Subjt:  DLLLQKLKEQKV

XP_038887050.1 uncharacterized protein LOC120077220 [Benincasa hispida]2.0e-2143.67Show/hide
Query:  LQRKFFNRNVHEDVEEQCPPLRDLIFVLTSGARSPWPCKGQLPTIVLSVKYMLLHKIEITNWCTYSHKSGLCISLANFFYHIGTRSQFKYGVFVLNQIKL
        L  +F N  V E+V EQ   + DL+F LT   +  WP K QLP   LSVKY+LLHKI I NWC  SHK  L   L N  Y IGT  +F YG+F+LNQIK 
Subjt:  LQRKFFNRNVHEDVEEQCPPLRDLIFVLTSGARSPWPCKGQLPTIVLSVKYMLLHKIEITNWCTYSHKSGLCISLANFFYHIGTRSQFKYGVFVLNQIKL

Query:  HIGLKTFKLSICYPWLICEILFTQKPDMLS-TSEPMGPSPSFSSISSKLLQEKYVPNL
        HI  +  K+    P+ +        P   S    P+ P+ SFS I   L + K+VP L
Subjt:  HIGLKTFKLSICYPWLICEILFTQKPDMLS-TSEPMGPSPSFSSISSKLLQEKYVPNL

XP_038889203.1 uncharacterized protein LOC120079088 [Benincasa hispida]1.9e-3557.75Show/hide
Query:  KFFNRNVHEDVEEQCPPLRDLIFVLTSGARSPWPCKGQLPTIVLSVKYMLLHKIEITNWCTYSHKSGLCISLANFFYHIGTRSQFKYGVFVLNQIKLHIG
        +F  RNV E+V EQ P LRDL+F LT GARS WP KGQL T  LSVKY+LLH+I   NWC   HKS L I+LA+  Y I TRSQF Y VFV+NQIK  IG
Subjt:  KFFNRNVHEDVEEQCPPLRDLIFVLTSGARSPWPCKGQLPTIVLSVKYMLLHKIEITNWCTYSHKSGLCISLANFFYHIGTRSQFKYGVFVLNQIKLHIG

Query:  LKTFKLSICYPWLICEILFTQKPDMLSTSEPMGPSPSFSSIS
            K S C+P+LIC IL +QK D+L+ S+ + PSPS   I+
Subjt:  LKTFKLSICYPWLICEILFTQKPDMLSTSEPMGPSPSFSSIS

XP_038904458.1 uncharacterized protein LOC120090822 [Benincasa hispida]1.0e-2538.31Show/hide
Query:  KFFNRNVHEDVEEQCPPLRDLIFVLTSGARSPWPCKGQLPTIVLSVKYMLLHKIEITNWCTYSHKSGLCISLANFFYHIGTRSQFKYGVFVLNQIKLHIG
        +F  RNV E+V +Q P LRDL+F L   ARS WP +GQLPT  L+VKY LLH+I I +WC  SHKS L I+LA   Y +GTR+QF Y             
Subjt:  KFFNRNVHEDVEEQCPPLRDLIFVLTSGARSPWPCKGQLPTIVLSVKYMLLHKIEITNWCTYSHKSGLCISLANFFYHIGTRSQFKYGVFVLNQIKLHIG

Query:  LKTFKLSICYPWLICEILFTQKPDMLSTSEPMGPSPSFSSISSKLLQEKYVPNLDPSSLARPIDEPSWFFIESPFGSRLLLLLFLKARGIDLLLQKLKEQ
                             KPD+ +  E +GP  S  SI  KLLQ  YV +L+ +++   +D  S   + S F   +L LL +++  ++ L+ +L+E+
Subjt:  LKTFKLSICYPWLICEILFTQKPDMLSTSEPMGPSPSFSSISSKLLQEKYVPNLDPSSLARPIDEPSWFFIESPFGSRLLLLLFLKARGIDLLLQKLKEQ

Query:  K
        K
Subjt:  K

TrEMBL top hitse value%identityAlignment
A0A1S3CHW3 uncharacterized protein LOC1035011374.1e-2030.66Show/hide
Query:  KFFNRNVHEDVEEQCPPLRDLIFVLTSGARSPWPCKGQLPTIVLSVKYMLLHKIEITNWCTYSHKSGLCISLANFFYHIGTRSQFKYGVFVLNQIKLHIG
        +F    V  D    CP    L  VL+ G  S WP  G +P   LSVKY +LHKI I NW   SH S +  +L  F Y I    +   G F+ NQ+  H+G
Subjt:  KFFNRNVHEDVEEQCPPLRDLIFVLTSGARSPWPCKGQLPTIVLSVKYMLLHKIEITNWCTYSHKSGLCISLANFFYHIGTRSQFKYGVFVLNQIKLHIG

Query:  LKTFKLSICYPWLICEILFTQKPDMLSTSEPMGPSPSFSSISSKLLQEKYVPNLD----PSSLARPIDEPSW------FFIESPFGSRLLLLLFLKARGI
            K+ I +P L   +L      +L+ S+  GP P   ++S +L Q  +VP++D    P+   R  D   W      F+++    +R++  L  ++R +
Subjt:  LKTFKLSICYPWLICEILFTQKPDMLSTSEPMGPSPSFSSISSKLLQEKYVPNLD----PSSLARPIDEPSW------FFIESPFGSRLLLLLFLKARGI

Query:  DLLLQKLKEQKV
           +  L E+++
Subjt:  DLLLQKLKEQKV

A0A5A7SM94 Uncharacterized protein4.1e-2029.95Show/hide
Query:  KIKVVLQRKFFNRNVHEDVEEQCPPLRDLIFVLTSGARSPWPCKGQLPTIVLSVKYMLLHKIEITNWCTYSHKSGLCISLANFFYHIGTRSQFKYGVFVL
        KI + +  +F   N+  D     P    L+FVL+ G  S WP  G +  + LSVKY++LHKI I NW T SH S + I+L  F Y I          F+ 
Subjt:  KIKVVLQRKFFNRNVHEDVEEQCPPLRDLIFVLTSGARSPWPCKGQLPTIVLSVKYMLLHKIEITNWCTYSHKSGLCISLANFFYHIGTRSQFKYGVFVL

Query:  NQIKLHIGLKTFKLSICYPWLICEILFTQKPDMLSTSEPMGPSPSFSSISSKLLQEKYVPNLD----PSSLARPIDEPSW------FFIESPFGSRLLLL
        NQ+  H+G    K+ I  PW    +L      +L+T++ +   P   S+S +L Q  +VP+++    PS      D   W      FF+     S+++  
Subjt:  NQIKLHIGLKTFKLSICYPWLICEILFTQKPDMLSTSEPMGPSPSFSSISSKLLQEKYVPNLD----PSSLARPIDEPSW------FFIESPFGSRLLLL

Query:  LFLKARGIDLLLQKLKE
          +++R +   +  L E
Subjt:  LFLKARGIDLLLQKLKE

A0A5A7VJ79 Uncharacterized protein4.1e-2030.66Show/hide
Query:  KFFNRNVHEDVEEQCPPLRDLIFVLTSGARSPWPCKGQLPTIVLSVKYMLLHKIEITNWCTYSHKSGLCISLANFFYHIGTRSQFKYGVFVLNQIKLHIG
        +F    V  D    CP    L  VL+ G  S WP  G +P   LSVKY +LHKI I NW   SH S +  +L  F Y I    +   G F+ NQ+  H+G
Subjt:  KFFNRNVHEDVEEQCPPLRDLIFVLTSGARSPWPCKGQLPTIVLSVKYMLLHKIEITNWCTYSHKSGLCISLANFFYHIGTRSQFKYGVFVLNQIKLHIG

Query:  LKTFKLSICYPWLICEILFTQKPDMLSTSEPMGPSPSFSSISSKLLQEKYVPNLD----PSSLARPIDEPSW------FFIESPFGSRLLLLLFLKARGI
            K+ I +P L   +L      +L+ S+  GP P   ++S +L Q  +VP++D    P+   R  D   W      F+++    +R++  L  ++R +
Subjt:  LKTFKLSICYPWLICEILFTQKPDMLSTSEPMGPSPSFSSISSKLLQEKYVPNLD----PSSLARPIDEPSW------FFIESPFGSRLLLLLFLKARGI

Query:  DLLLQKLKEQKV
           +  L E+++
Subjt:  DLLLQKLKEQKV

A0A5D3BS10 Uncharacterized protein4.1e-2030.66Show/hide
Query:  KFFNRNVHEDVEEQCPPLRDLIFVLTSGARSPWPCKGQLPTIVLSVKYMLLHKIEITNWCTYSHKSGLCISLANFFYHIGTRSQFKYGVFVLNQIKLHIG
        +F    V  D    CP    L  VL+ G  S WP  G +P   LSVKY +LHKI I NW   SH S +  +L  F Y I    +   G F+ NQ+  H+G
Subjt:  KFFNRNVHEDVEEQCPPLRDLIFVLTSGARSPWPCKGQLPTIVLSVKYMLLHKIEITNWCTYSHKSGLCISLANFFYHIGTRSQFKYGVFVLNQIKLHIG

Query:  LKTFKLSICYPWLICEILFTQKPDMLSTSEPMGPSPSFSSISSKLLQEKYVPNLD----PSSLARPIDEPSW------FFIESPFGSRLLLLLFLKARGI
            K+ I +P L   +L      +L+ S+  GP P   ++S +L Q  +VP++D    P+   R  D   W      F+++    +R++  L  ++R +
Subjt:  LKTFKLSICYPWLICEILFTQKPDMLSTSEPMGPSPSFSSISSKLLQEKYVPNLD----PSSLARPIDEPSW------FFIESPFGSRLLLLLFLKARGI

Query:  DLLLQKLKEQKV
           +  L E+++
Subjt:  DLLLQKLKEQKV

A0A5D3C5U0 Reverse transcriptase Ty1/copia-type domain-containing protein4.1e-2028.75Show/hide
Query:  ESVEKIKVVLQRKFFNRNVH----------------------EDVEEQCPPLRDLIFVLTSGARSPWPCKGQLPTIVLSVKYMLLHKIEITNWCTYSHKS
        ESV++ K V+QR+  +  VH                       D    CPP   L  +L  G  S WP  G +P   L VKY +LHKI I NW   S  S
Subjt:  ESVEKIKVVLQRKFFNRNVH----------------------EDVEEQCPPLRDLIFVLTSGARSPWPCKGQLPTIVLSVKYMLLHKIEITNWCTYSHKS

Query:  GLCISLANFFYHIGTRSQFKYGVFVLNQIKLHIGLKTFKLSICYPWLICEILFTQKPDMLSTSEPMGPSPSFSSISSKLLQEKYVPNLD----PSSLARP
         + ++L  F Y I    +   G F+ NQ+  H+G    K+ I +P L   +L      +L+ S+  GP P    +S +L Q  +VP++D    P+   R 
Subjt:  GLCISLANFFYHIGTRSQFKYGVFVLNQIKLHIGLKTFKLSICYPWLICEILFTQKPDMLSTSEPMGPSPSFSSISSKLLQEKYVPNLD----PSSLARP

Query:  IDEPSWFFIESPFGSRLLLLLFLKARGIDLLLQKLKEQKV
         D    F+++    +R++  L +++R +   +  L E+++
Subjt:  IDEPSWFFIESPFGSRLLLLLFLKARGIDLLLQKLKEQKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGCTGATAAAATAATCTCTTCTGCCACTGATATTCTTGTTGAAGATTTTGATATGTTGATTAATGATAATGCTTTGAATTATGTTATTGAGAACATTGTGTCTGC
TGCTATTGTTCTTGAGAATGAAAACATAGTTAATACAAATTATGACCCTATAGAAAGTGTTGAAAAGATTAAGGTCGTGCTTCAACGCAAGTTTTTTAATCGAAATGTTC
ATGAAGATGTGGAAGAGCAATGTCCTCCCTTGAGAGACTTGATTTTTGTGCTCACTAGTGGTGCACGCTCTCCGTGGCCTTGTAAGGGTCAACTTCCTACCATCGTGCTT
AGTGTTAAATATATGTTACTGCATAAGATTGAGATTACTAATTGGTGTACCTATTCTCACAAGTCAGGGTTGTGTATCTCTCTGGCCAATTTTTTTTATCATATTGGAAC
TCGTTCTCAGTTCAAATATGGAGTTTTTGTATTAAACCAAATCAAACTTCATATTGGCTTAAAGACATTTAAACTATCAATCTGTTATCCATGGTTAATTTGTGAGATCC
TCTTTACGCAAAAGCCTGACATGTTATCTACTTCAGAACCTATGGGGCCTTCACCTAGTTTTTCTTCTATCAGCTCCAAGCTTTTGCAAGAAAAATATGTGCCCAATCTT
GATCCTTCATCTTTAGCTCGTCCAATTGATGAGCCTAGCTGGTTCTTCATTGAGTCTCCTTTTGGGAGTCGCTTATTGCTACTTTTGTTTCTTAAGGCTCGAGGTATTGA
TCTGTTACTTCAAAAGCTCAAGGAGCAAAAGGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGCTGATAAAATAATCTCTTCTGCCACTGATATTCTTGTTGAAGATTTTGATATGTTGATTAATGATAATGCTTTGAATTATGTTATTGAGAACATTGTGTCTGC
TGCTATTGTTCTTGAGAATGAAAACATAGTTAATACAAATTATGACCCTATAGAAAGTGTTGAAAAGATTAAGGTCGTGCTTCAACGCAAGTTTTTTAATCGAAATGTTC
ATGAAGATGTGGAAGAGCAATGTCCTCCCTTGAGAGACTTGATTTTTGTGCTCACTAGTGGTGCACGCTCTCCGTGGCCTTGTAAGGGTCAACTTCCTACCATCGTGCTT
AGTGTTAAATATATGTTACTGCATAAGATTGAGATTACTAATTGGTGTACCTATTCTCACAAGTCAGGGTTGTGTATCTCTCTGGCCAATTTTTTTTATCATATTGGAAC
TCGTTCTCAGTTCAAATATGGAGTTTTTGTATTAAACCAAATCAAACTTCATATTGGCTTAAAGACATTTAAACTATCAATCTGTTATCCATGGTTAATTTGTGAGATCC
TCTTTACGCAAAAGCCTGACATGTTATCTACTTCAGAACCTATGGGGCCTTCACCTAGTTTTTCTTCTATCAGCTCCAAGCTTTTGCAAGAAAAATATGTGCCCAATCTT
GATCCTTCATCTTTAGCTCGTCCAATTGATGAGCCTAGCTGGTTCTTCATTGAGTCTCCTTTTGGGAGTCGCTTATTGCTACTTTTGTTTCTTAAGGCTCGAGGTATTGA
TCTGTTACTTCAAAAGCTCAAGGAGCAAAAGGTTTAA
Protein sequenceShow/hide protein sequence
MSADKIISSATDILVEDFDMLINDNALNYVIENIVSAAIVLENENIVNTNYDPIESVEKIKVVLQRKFFNRNVHEDVEEQCPPLRDLIFVLTSGARSPWPCKGQLPTIVL
SVKYMLLHKIEITNWCTYSHKSGLCISLANFFYHIGTRSQFKYGVFVLNQIKLHIGLKTFKLSICYPWLICEILFTQKPDMLSTSEPMGPSPSFSSISSKLLQEKYVPNL
DPSSLARPIDEPSWFFIESPFGSRLLLLLFLKARGIDLLLQKLKEQKV