CuGenDBv2

Gene ID	PI0001945
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Gag-pol polyprotein
Genome location	chr03:22604692..22605258
RNA-Seq Expression	PI0001945
Synteny	PI0001945
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function) GO:0008233 - peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

AAO73521.1 gag-pol polyprotein [Glycine max]

4.6e-65

63.68

Show/hide

Query:  METIREGGSTTRPPVLDGSNYAYWKARMIAFLKSVDSKTWKTIIVGWTHPTSINEDG--IEILKPEKDWTDVEDEAALGNSRALNALFNGVDPNTFKLIN
        M   +EGG   RPP+LDGSNY YWKARM+AFLKS+DS+TWK +I GW HP  ++ +G   + LKPE+DWT  EDE ALGNS+ALNALFNGVD N F+LIN
Subjt:  METIREGGSTTRPPVLDGSNYAYWKARMIAFLKSVDSKTWKTIIVGWTHPTSINEDG--IEILKPEKDWTDVEDEAALGNSRALNALFNGVDPNTFKLIN

Query:  TCISAADAWQILAVAHEGTTKVKMSRLQILSSQFENLKMQEDETIAEYNVKIRDIANESFSLGEKLADEKLARKVLRSLPKRFNMKVTAI
        TC  A DAW+IL + HEGT+KVK+SRLQ+L+++FENLKM+E+E I ++++ I +IAN   +LGE++ DEKL RK+LRSLPKRF+MKVTAI
Subjt:  TCISAADAWQILAVAHEGTTKVKMSRLQILSSQFENLKMQEDETIAEYNVKIRDIANESFSLGEKLADEKLARKVLRSLPKRFNMKVTAI

AAO73523.1 gag-pol polyprotein [Glycine max]

1.9e-63

63.68

Show/hide

Query:  METIREGGSTTRPPVLDGSNYAYWKARMIAFLKSVDSKTWKTIIVGWTHPTSINEDG--IEILKPEKDWTDVEDEAALGNSRALNALFNGVDPNTFKLIN
        M   +EGG   RPP+LDGSNY YWKARM+AFLKS+DS+TWK +I GW HP  ++ +G   + LKPE+DWT  EDE ALGNS+ALNALFNGVD N F+LIN
Subjt:  METIREGGSTTRPPVLDGSNYAYWKARMIAFLKSVDSKTWKTIIVGWTHPTSINEDG--IEILKPEKDWTDVEDEAALGNSRALNALFNGVDPNTFKLIN

Query:  TCISAADAWQILAVAHEGTTKVKMSRLQILSSQFENLKMQEDETIAEYNVKIRDIANESFSLGEKLADEKLARKVLRSLPKRFNMKVTAI
        TC  A DA +IL   HEGT+KVKMSRLQ+L+++FENLKM+E+E I ++++ I +IAN   +LGE++ DEKL RK+LRSLPKRF+MKVTAI
Subjt:  TCISAADAWQILAVAHEGTTKVKMSRLQILSSQFENLKMQEDETIAEYNVKIRDIANESFSLGEKLADEKLARKVLRSLPKRFNMKVTAI

AAO73527.1 gag-pol polyprotein [Glycine max]

1.6e-65

64.21

Show/hide

Query:  METIREGGSTTRPPVLDGSNYAYWKARMIAFLKSVDSKTWKTIIVGWTHPTSINEDG--IEILKPEKDWTDVEDEAALGNSRALNALFNGVDPNTFKLIN
        M   +EGG   RPP+LDGSNY YWKARM+AFLKS+DS+TWK +I GW HP  ++ +G   + LKPE+DWT  EDE ALGNS+ALNALFNGVD N F+LIN
Subjt:  METIREGGSTTRPPVLDGSNYAYWKARMIAFLKSVDSKTWKTIIVGWTHPTSINEDG--IEILKPEKDWTDVEDEAALGNSRALNALFNGVDPNTFKLIN

Query:  TCISAADAWQILAVAHEGTTKVKMSRLQILSSQFENLKMQEDETIAEYNVKIRDIANESFSLGEKLADEKLARKVLRSLPKRFNMKVTAI
        TC  A DAW+IL + HEGT+KVKMSRLQ+L+++FENLKM+E+E I ++++ I +IAN   +LGE++ DEKL RK+LRSLPKRF+MKVTAI
Subjt:  TCISAADAWQILAVAHEGTTKVKMSRLQILSSQFENLKMQEDETIAEYNVKIRDIANESFSLGEKLADEKLARKVLRSLPKRFNMKVTAI

AAO73529.1 gag-pol polyprotein [Glycine max]

1.7e-64

63.68

Show/hide

Query:  METIREGGSTTRPPVLDGSNYAYWKARMIAFLKSVDSKTWKTIIVGWTHPTSINEDG--IEILKPEKDWTDVEDEAALGNSRALNALFNGVDPNTFKLIN
        M   +EGG   RPP+LDG+NY YWKARM+AFLKS+DS+TWK +I GW HP  ++ +G     LKPE+DWT  EDE ALGNS+ALNALFNGVD N F+LIN
Subjt:  METIREGGSTTRPPVLDGSNYAYWKARMIAFLKSVDSKTWKTIIVGWTHPTSINEDG--IEILKPEKDWTDVEDEAALGNSRALNALFNGVDPNTFKLIN

Query:  TCISAADAWQILAVAHEGTTKVKMSRLQILSSQFENLKMQEDETIAEYNVKIRDIANESFSLGEKLADEKLARKVLRSLPKRFNMKVTAI
        TC  A DAW+IL   HEGT+KVKMSRLQ+L+++FENLKM+E+E I ++++ I +IAN   +LGE++ DEKL RK+LRSLPKRF+MKVTAI
Subjt:  TCISAADAWQILAVAHEGTTKVKMSRLQILSSQFENLKMQEDETIAEYNVKIRDIANESFSLGEKLADEKLARKVLRSLPKRFNMKVTAI

NP_001235160.1 gag-protease polyprotein [Glycine max]

6.6e-64

63.16

Show/hide

Query:  METIREGGSTTRPPVLDGSNYAYWKARMIAFLKSVDSKTWKTIIVGWTHPTSINEDG--IEILKPEKDWTDVEDEAALGNSRALNALFNGVDPNTFKLIN
        M   +EGG   RPP+LDG+NY YWKARM+AFLKS+DS+TWK +I  W HP  ++ +G   + LKPE+DWT  EDE ALGNS+ALNALFNGVD N F+LIN
Subjt:  METIREGGSTTRPPVLDGSNYAYWKARMIAFLKSVDSKTWKTIIVGWTHPTSINEDG--IEILKPEKDWTDVEDEAALGNSRALNALFNGVDPNTFKLIN

Query:  TCISAADAWQILAVAHEGTTKVKMSRLQILSSQFENLKMQEDETIAEYNVKIRDIANESFSLGEKLADEKLARKVLRSLPKRFNMKVTAI
        TC  A DAW+IL   HEGT+KVKMSRLQ+L+++FENLKM+E+E I ++++ I +IAN   +LGE++ DEKL RK+LRSLPKRF+MKVTAI
Subjt:  TCISAADAWQILAVAHEGTTKVKMSRLQILSSQFENLKMQEDETIAEYNVKIRDIANESFSLGEKLADEKLARKVLRSLPKRFNMKVTAI

TrEMBL top hits

e value

%identity

Alignment

Q84VH6 Gag-pol polyprotein

8.5e-65

63.68

Show/hide

Query:  METIREGGSTTRPPVLDGSNYAYWKARMIAFLKSVDSKTWKTIIVGWTHPTSINEDG--IEILKPEKDWTDVEDEAALGNSRALNALFNGVDPNTFKLIN
        M   +EGG   RPP+LDG+NY YWKARM+AFLKS+DS+TWK +I GW HP  ++ +G     LKPE+DWT  EDE ALGNS+ALNALFNGVD N F+LIN
Subjt:  METIREGGSTTRPPVLDGSNYAYWKARMIAFLKSVDSKTWKTIIVGWTHPTSINEDG--IEILKPEKDWTDVEDEAALGNSRALNALFNGVDPNTFKLIN

Query:  TCISAADAWQILAVAHEGTTKVKMSRLQILSSQFENLKMQEDETIAEYNVKIRDIANESFSLGEKLADEKLARKVLRSLPKRFNMKVTAI
        TC  A DAW+IL   HEGT+KVKMSRLQ+L+++FENLKM+E+E I ++++ I +IAN   +LGE++ DEKL RK+LRSLPKRF+MKVTAI
Subjt:  TCISAADAWQILAVAHEGTTKVKMSRLQILSSQFENLKMQEDETIAEYNVKIRDIANESFSLGEKLADEKLARKVLRSLPKRFNMKVTAI

Q84VH8 Gag-pol polyprotein

7.7e-66

64.21

Show/hide

Query:  METIREGGSTTRPPVLDGSNYAYWKARMIAFLKSVDSKTWKTIIVGWTHPTSINEDG--IEILKPEKDWTDVEDEAALGNSRALNALFNGVDPNTFKLIN
        M   +EGG   RPP+LDGSNY YWKARM+AFLKS+DS+TWK +I GW HP  ++ +G   + LKPE+DWT  EDE ALGNS+ALNALFNGVD N F+LIN
Subjt:  METIREGGSTTRPPVLDGSNYAYWKARMIAFLKSVDSKTWKTIIVGWTHPTSINEDG--IEILKPEKDWTDVEDEAALGNSRALNALFNGVDPNTFKLIN

Query:  TCISAADAWQILAVAHEGTTKVKMSRLQILSSQFENLKMQEDETIAEYNVKIRDIANESFSLGEKLADEKLARKVLRSLPKRFNMKVTAI
        TC  A DAW+IL + HEGT+KVKMSRLQ+L+++FENLKM+E+E I ++++ I +IAN   +LGE++ DEKL RK+LRSLPKRF+MKVTAI
Subjt:  TCISAADAWQILAVAHEGTTKVKMSRLQILSSQFENLKMQEDETIAEYNVKIRDIANESFSLGEKLADEKLARKVLRSLPKRFNMKVTAI

Q84VI2 Gag-pol polyprotein

9.4e-64

63.68

Show/hide

Query:  METIREGGSTTRPPVLDGSNYAYWKARMIAFLKSVDSKTWKTIIVGWTHPTSINEDG--IEILKPEKDWTDVEDEAALGNSRALNALFNGVDPNTFKLIN
        M   +EGG   RPP+LDGSNY YWKARM+AFLKS+DS+TWK +I GW HP  ++ +G   + LKPE+DWT  EDE ALGNS+ALNALFNGVD N F+LIN
Subjt:  METIREGGSTTRPPVLDGSNYAYWKARMIAFLKSVDSKTWKTIIVGWTHPTSINEDG--IEILKPEKDWTDVEDEAALGNSRALNALFNGVDPNTFKLIN

Query:  TCISAADAWQILAVAHEGTTKVKMSRLQILSSQFENLKMQEDETIAEYNVKIRDIANESFSLGEKLADEKLARKVLRSLPKRFNMKVTAI
        TC  A DA +IL   HEGT+KVKMSRLQ+L+++FENLKM+E+E I ++++ I +IAN   +LGE++ DEKL RK+LRSLPKRF+MKVTAI
Subjt:  TCISAADAWQILAVAHEGTTKVKMSRLQILSSQFENLKMQEDETIAEYNVKIRDIANESFSLGEKLADEKLARKVLRSLPKRFNMKVTAI

Q84VI4 Gag-pol polyprotein

2.2e-65

63.68

Show/hide

Query:  METIREGGSTTRPPVLDGSNYAYWKARMIAFLKSVDSKTWKTIIVGWTHPTSINEDG--IEILKPEKDWTDVEDEAALGNSRALNALFNGVDPNTFKLIN
        M   +EGG   RPP+LDGSNY YWKARM+AFLKS+DS+TWK +I GW HP  ++ +G   + LKPE+DWT  EDE ALGNS+ALNALFNGVD N F+LIN
Subjt:  METIREGGSTTRPPVLDGSNYAYWKARMIAFLKSVDSKTWKTIIVGWTHPTSINEDG--IEILKPEKDWTDVEDEAALGNSRALNALFNGVDPNTFKLIN

Query:  TCISAADAWQILAVAHEGTTKVKMSRLQILSSQFENLKMQEDETIAEYNVKIRDIANESFSLGEKLADEKLARKVLRSLPKRFNMKVTAI
        TC  A DAW+IL + HEGT+KVK+SRLQ+L+++FENLKM+E+E I ++++ I +IAN   +LGE++ DEKL RK+LRSLPKRF+MKVTAI
Subjt:  TCISAADAWQILAVAHEGTTKVKMSRLQILSSQFENLKMQEDETIAEYNVKIRDIANESFSLGEKLADEKLARKVLRSLPKRFNMKVTAI

V9H042 Gag-protease polyprotein

3.2e-64

63.16

Show/hide

Query:  METIREGGSTTRPPVLDGSNYAYWKARMIAFLKSVDSKTWKTIIVGWTHPTSINEDG--IEILKPEKDWTDVEDEAALGNSRALNALFNGVDPNTFKLIN
        M   +EGG   RPP+LDG+NY YWKARM+AFLKS+DS+TWK +I  W HP  ++ +G   + LKPE+DWT  EDE ALGNS+ALNALFNGVD N F+LIN
Subjt:  METIREGGSTTRPPVLDGSNYAYWKARMIAFLKSVDSKTWKTIIVGWTHPTSINEDG--IEILKPEKDWTDVEDEAALGNSRALNALFNGVDPNTFKLIN

Query:  TCISAADAWQILAVAHEGTTKVKMSRLQILSSQFENLKMQEDETIAEYNVKIRDIANESFSLGEKLADEKLARKVLRSLPKRFNMKVTAI
        TC  A DAW+IL   HEGT+KVKMSRLQ+L+++FENLKM+E+E I ++++ I +IAN   +LGE++ DEKL RK+LRSLPKRF+MKVTAI
Subjt:  TCISAADAWQILAVAHEGTTKVKMSRLQILSSQFENLKMQEDETIAEYNVKIRDIANESFSLGEKLADEKLARKVLRSLPKRFNMKVTAI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGAAACTATTAGAGAAGGAGGATCTACTACCAGACCACCTGTTCTGGACGGATCTAATTATGCTTACTGGAAAGCAAGGATGATAGCTTTTCTCAAATCTGTTGACAG
CAAGACATGGAAGACTATCATTGTAGGATGGACTCATCCAACTTCTATCAATGAGGATGGAATTGAAATTCTTAAACCCGAAAAAGATTGGACTGATGTAGAGGATGAAG
CTGCCCTAGGAAATTCTCGCGCTTTGAATGCTTTGTTTAATGGAGTTGATCCAAATACATTCAAACTCATAAACACTTGTATCTCTGCTGCTGATGCTTGGCAAATACTG
GCTGTAGCACATGAAGGAACTACAAAGGTTAAAATGTCTCGTCTTCAAATTTTATCTTCTCAATTTGAAAATCTTAAAATGCAGGAAGACGAGACCATAGCCGAATACAA
TGTCAAAATTCGCGATATTGCAAATGAATCTTTCTCATTAGGAGAAAAATTAGCTGATGAAAAGTTAGCTCGAAAAGTTCTAAGGTCTCTTCCTAAAAGATTCAACATGA
AAGTTACTGCTATTTAA

mRNA sequence

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Protein sequence

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METIREGGSTTRPPVLDGSNYAYWKARMIAFLKSVDSKTWKTIIVGWTHPTSINEDGIEILKPEKDWTDVEDEAALGNSRALNALFNGVDPNTFKLINTCISAADAWQIL
AVAHEGTTKVKMSRLQILSSQFENLKMQEDETIAEYNVKIRDIANESFSLGEKLADEKLARKVLRSLPKRFNMKVTAI

PI0001945 (gene) of Melon (PI 482460) v1 genome