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PI0001956 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0001956
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr05:9850397..9850762
RNA-Seq ExpressionPI0001956
SyntenyPI0001956
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026280.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.8e-1345.87Show/hide
Query:  VEEELYDRVPQRLIDGL---ARDLEKKFGIEHLKALEAQECSGT---------------CFRVMQFPEERRVGLTIFLLQKDAEDWWALEE---RCSGKV
        VEE+L DR+ QRLI G+     D EKK+GIE LKAL A    GT               CF+V +  E+R+V L  FLLQ  AEDWW +EE   R +G +
Subjt:  VEEELYDRVPQRLIDGL---ARDLEKKFGIEHLKALEAQECSGT---------------CFRVMQFPEERRVGLTIFLLQKDAEDWWALEE---RCSGKV

Query:  SWVEFKEVF
         W EFK+ F
Subjt:  SWVEFKEVF

KAA0036813.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.3e-1241.59Show/hide
Query:  VRRVVEEELYDRVPQRLIDGL---ARDLEKKFGIEHLKALEAQECSGT---------------CFRVMQFPEERRVGLTIFLLQKDAEDWWALEE---RC
        V   VEE+L DR+ QRL+ G+     D EKK+G E LKAL A   +GT               CFRV ++ E+R+V L  FLLQ DAEDWW +EE   R 
Subjt:  VRRVVEEELYDRVPQRLIDGL---ARDLEKKFGIEHLKALEAQECSGT---------------CFRVMQFPEERRVGLTIFLLQKDAEDWWALEE---RC

Query:  SGKVSWVEFKEVF
        +G ++  E+++ +
Subjt:  SGKVSWVEFKEVF

KAA0066608.1 A-kinase anchor protein 12 [Cucumis melo var. makuwa]3.9e-1348.45Show/hide
Query:  NFEAHLVNLNVRRVVEEELYDRVPQRLIDGLARDLEKKFGIEHLKALEAQECSGT---------------CFRVMQFPEERRVGLTIFLLQKDAEDW
        + E HLVN +VRR  EE +YDRV Q +ID + + LEKKFGIE L+AL   E +GT               CFRV Q  +ER+V L +FLLQ+  EDW
Subjt:  NFEAHLVNLNVRRVVEEELYDRVPQRLIDGLARDLEKKFGIEHLKALEAQECSGT---------------CFRVMQFPEERRVGLTIFLLQKDAEDW

KGN61535.1 hypothetical protein Csa_006696 [Cucumis sativus]6.3e-1953.27Show/hide
Query:  EAHLVNLNVRRVVEEELYDRVPQRLIDGLARDLEKKFGIEHLKALEAQECSG---------------TCFRVMQFPEERRVGLTIFLLQKDAEDWWALEE
        EAH +N N RR  EE LYDR  QRLI+ LA+ L+K FGIE +KAL A E +G                CFRVMQ P+ERRV L +FLL + AEDWW LEE
Subjt:  EAHLVNLNVRRVVEEELYDRVPQRLIDGLARDLEKKFGIEHLKALEAQECSG---------------TCFRVMQFPEERRVGLTIFLLQKDAEDWWALEE

Query:  RCSGKVS
           G VS
Subjt:  RCSGKVS

TYJ95881.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]3.2e-1546.02Show/hide
Query:  VRRVVEEELYDRVPQRLIDGL---ARDLEKKFGIEHLKALEAQECSGT---------------CFRVMQFPEERRVGLTIFLLQKDAEDWWALEE---RC
        V   VEE+L DR+ QRL+ G+     D EKK+G E LKAL A   +GT               CFRV ++ E+R+V L  FLLQ DAEDWW +EE   R 
Subjt:  VRRVVEEELYDRVPQRLIDGL---ARDLEKKFGIEHLKALEAQECSGT---------------CFRVMQFPEERRVGLTIFLLQKDAEDWWALEE---RC

Query:  SGKVSWVEFKEVF
        +G +SW EFK+ F
Subjt:  SGKVSWVEFKEVF

TrEMBL top hitse value%identityAlignment
A0A5A7SJ99 DNA/RNA polymerases superfamily protein4.2e-1345.87Show/hide
Query:  VEEELYDRVPQRLIDGL---ARDLEKKFGIEHLKALEAQECSGT---------------CFRVMQFPEERRVGLTIFLLQKDAEDWWALEE---RCSGKV
        VEE+L DR+ QRLI G+     D EKK+GIE LKAL A    GT               CF+V +  E+R+V L  FLLQ  AEDWW +EE   R +G +
Subjt:  VEEELYDRVPQRLIDGL---ARDLEKKFGIEHLKALEAQECSGT---------------CFRVMQFPEERRVGLTIFLLQKDAEDWWALEE---RCSGKV

Query:  SWVEFKEVF
         W EFK+ F
Subjt:  SWVEFKEVF

A0A5A7T1M0 Reverse transcriptase1.6e-1241.59Show/hide
Query:  VRRVVEEELYDRVPQRLIDGL---ARDLEKKFGIEHLKALEAQECSGT---------------CFRVMQFPEERRVGLTIFLLQKDAEDWWALEE---RC
        V   VEE+L DR+ QRL+ G+     D EKK+G E LKAL A   +GT               CFRV ++ E+R+V L  FLLQ DAEDWW +EE   R 
Subjt:  VRRVVEEELYDRVPQRLIDGL---ARDLEKKFGIEHLKALEAQECSGT---------------CFRVMQFPEERRVGLTIFLLQKDAEDWWALEE---RC

Query:  SGKVSWVEFKEVF
        +G ++  E+++ +
Subjt:  SGKVSWVEFKEVF

A0A5A7U067 Retrotrans_gag domain-containing protein8.0e-1240.5Show/hide
Query:  EAHLVNLNVRRVVEEELYDRVPQRLIDGL---ARDLEKKFGIEHLKALEAQECSGT---------------CFRVMQFPEERRVGLTIFLLQKDAEDWWA
        +A    L+V   VEE+L DR+ Q L+ G+     +LEK F IE LKAL A   +GT               CF+VM+  E+R+V L +FLL+   EDWW 
Subjt:  EAHLVNLNVRRVVEEELYDRVPQRLIDGL---ARDLEKKFGIEHLKALEAQECSGT---------------CFRVMQFPEERRVGLTIFLLQKDAEDWWA

Query:  LEE---RCSGKVSWVEFKEVF
        L E   R +  +SW EFK+ F
Subjt:  LEE---RCSGKVSWVEFKEVF

A0A5D3BB91 Reverse transcriptase1.6e-1546.02Show/hide
Query:  VRRVVEEELYDRVPQRLIDGL---ARDLEKKFGIEHLKALEAQECSGT---------------CFRVMQFPEERRVGLTIFLLQKDAEDWWALEE---RC
        V   VEE+L DR+ QRL+ G+     D EKK+G E LKAL A   +GT               CFRV ++ E+R+V L  FLLQ DAEDWW +EE   R 
Subjt:  VRRVVEEELYDRVPQRLIDGL---ARDLEKKFGIEHLKALEAQECSGT---------------CFRVMQFPEERRVGLTIFLLQKDAEDWWALEE---RC

Query:  SGKVSWVEFKEVF
        +G +SW EFK+ F
Subjt:  SGKVSWVEFKEVF

A0A5D3CSN0 A-kinase anchor protein 121.9e-1348.45Show/hide
Query:  NFEAHLVNLNVRRVVEEELYDRVPQRLIDGLARDLEKKFGIEHLKALEAQECSGT---------------CFRVMQFPEERRVGLTIFLLQKDAEDW
        + E HLVN +VRR  EE +YDRV Q +ID + + LEKKFGIE L+AL   E +GT               CFRV Q  +ER+V L +FLLQ+  EDW
Subjt:  NFEAHLVNLNVRRVVEEELYDRVPQRLIDGLARDLEKKFGIEHLKALEAQECSGT---------------CFRVMQFPEERRVGLTIFLLQKDAEDW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGATAACTTTGAGGCTCATTTAGTGAACCTCAATGTAAGAAGAGTGGTAGAAGAAGAGTTGTATGATAGAGTGCCTCAAAGGTTGATAGATGGATTGGCAAGAGA
TCTAGAGAAAAAATTTGGAATAGAACACCTCAAGGCGTTAGAAGCTCAAGAATGTTCGGGAACATGTTTTAGAGTTATGCAATTTCCAGAAGAGAGAAGAGTTGGTCTCA
CTATTTTTCTACTTCAAAAGGATGCAGAAGATTGGTGGGCATTGGAAGAGAGATGTAGTGGCAAAGTAAGTTGGGTCGAGTTTAAGGAAGTCTTTAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGATGGATAACTTTGAGGCTCATTTAGTGAACCTCAATGTAAGAAGAGTGGTAGAAGAAGAGTTGTATGATAGAGTGCCTCAAAGGTTGATAGATGGATTGGCAAGAGA
TCTAGAGAAAAAATTTGGAATAGAACACCTCAAGGCGTTAGAAGCTCAAGAATGTTCGGGAACATGTTTTAGAGTTATGCAATTTCCAGAAGAGAGAAGAGTTGGTCTCA
CTATTTTTCTACTTCAAAAGGATGCAGAAGATTGGTGGGCATTGGAAGAGAGATGTAGTGGCAAAGTAAGTTGGGTCGAGTTTAAGGAAGTCTTTAACTAG
Protein sequenceShow/hide protein sequence
MMDNFEAHLVNLNVRRVVEEELYDRVPQRLIDGLARDLEKKFGIEHLKALEAQECSGTCFRVMQFPEERRVGLTIFLLQKDAEDWWALEERCSGKVSWVEFKEVFN