; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0001996 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0001996
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr11:18879571..18881386
RNA-Seq ExpressionPI0001996
SyntenyPI0001996
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]2.8e-8880.98Show/hide
Query:  DAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVTKCGVCGLIGYPNDKCPDLVEEANVIRKYD
        DAAAGGALADKTPTEA ELI RM ENSQNFGNRA ELDN LTKEVSELKSQMLNMTTLLTSFVQG  +KVTKCGVC L+G+PNDKCP+++E+ N++RKYD
Subjt:  DAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVTKCGVCGLIGYPNDKCPDLVEEANVIRKYD

Query:  PQGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPP
        P GNTYN+GWRDNPNLRWGN+NQ+ TQA PTS+NQGTNLED++KALATNT+SFQ EMKQQM+QLT AISK++GKGKLPAQPD+ANVSAISLRSGKIL  P
Subjt:  PQGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPP

Query:  SSEEK
        +++EK
Subjt:  SSEEK

KAA0032798.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-8780.98Show/hide
Query:  DAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVTKCGVCGLIGYPNDKCPDLVEEANVIRKYD
        DAAA GALADKTP EARELI RMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KVTKCGVCGL+GYPNDKCP ++E+ N++R+YD
Subjt:  DAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVTKCGVCGLIGYPNDKCPDLVEEANVIRKYD

Query:  PQGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPP
        P GNTYN GWRDNPNLRWGN+NQ+ TQA PTS+NQGTNLED++ ALATNT+SFQ EMKQQM+QLT  +SK++GKGKLPAQPDH NVSAISLRSGKIL  P
Subjt:  PQGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPP

Query:  SSEEK
        +++EK
Subjt:  SSEEK

KAA0038454.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.9e-8780.49Show/hide
Query:  DAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVTKCGVCGLIGYPNDKCPDLVEEANVIRKYD
        DAAAGGALADKTPTEARELI RM ENSQNFGNRA ELDN L KEVSELKSQMLNMT LLTSFVQG  +KVTKCGVC L+G+ NDKCP+++E+ N++RKYD
Subjt:  DAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVTKCGVCGLIGYPNDKCPDLVEEANVIRKYD

Query:  PQGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPP
        P GNTYN+GWRDNPNLRWGN+NQ+ TQA PTS+NQGTNLED++KALATNT SFQ EMKQQM+QLT AISK++GKGKLPAQPDHANVSAISLRSGKIL  P
Subjt:  PQGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPP

Query:  SSEEK
        +++EK
Subjt:  SSEEK

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-8677.57Show/hide
Query:  LLGSD----DAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVTKCGVCGLIGYPNDKCPDLVE
        LL SD    DA AGGALADK PTEARELIS+MAENSQ+F NRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KVTKCGVCGL+G+PNDKCP+++E
Subjt:  LLGSD----DAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVTKCGVCGLIGYPNDKCPDLVE

Query:  EANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISL
        + N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+ TQA  TS+NQGTNLED++KALATNT+SFQ EMKQQM+QLT AISK++GKGKL AQ ++ANVSA+SL
Subjt:  EANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISL

Query:  RSGKILQPPSSEEK
        RSGKIL  P+++EK
Subjt:  RSGKILQPPSSEEK

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.8e-8877.88Show/hide
Query:  PLLGSD------DAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVTKCGVCGLIGYPNDKCPD
        PL GS+      D AAGGALADKTPTEARELISRMAENS++FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KVTKCGVCGL+G+PNDKCP 
Subjt:  PLLGSD------DAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVTKCGVCGLIGYPNDKCPD

Query:  LVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSA
        ++E+ N++R+YDP  NTYN+GWRDN NLRWGN+NQ+ TQA  TS+NQGTNLED++KALATNT+SFQ +MKQQM+QLT AISK++GKGKLPAQPDHANVSA
Subjt:  LVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSA

Query:  ISLRSGKILQPPSSEEK
        ISLRSGKIL  P+++EK
Subjt:  ISLRSGKILQPPSSEEK

TrEMBL top hitse value%identityAlignment
A0A5A7SQH8 Retrotransposon gag protein6.7e-8880.98Show/hide
Query:  DAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVTKCGVCGLIGYPNDKCPDLVEEANVIRKYD
        DAAA GALADKTP EARELI RMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KVTKCGVCGL+GYPNDKCP ++E+ N++R+YD
Subjt:  DAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVTKCGVCGLIGYPNDKCPDLVEEANVIRKYD

Query:  PQGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPP
        P GNTYN GWRDNPNLRWGN+NQ+ TQA PTS+NQGTNLED++ ALATNT+SFQ EMKQQM+QLT  +SK++GKGKLPAQPDH NVSAISLRSGKIL  P
Subjt:  PQGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPP

Query:  SSEEK
        +++EK
Subjt:  SSEEK

A0A5A7T4R3 Retrotransposon gag protein3.3e-8780.49Show/hide
Query:  DAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVTKCGVCGLIGYPNDKCPDLVEEANVIRKYD
        DAAAGGALADKTPTEARELI RM ENSQNFGNRA ELDN L KEVSELKSQMLNMT LLTSFVQG  +KVTKCGVC L+G+ NDKCP+++E+ N++RKYD
Subjt:  DAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVTKCGVCGLIGYPNDKCPDLVEEANVIRKYD

Query:  PQGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPP
        P GNTYN+GWRDNPNLRWGN+NQ+ TQA PTS+NQGTNLED++KALATNT SFQ EMKQQM+QLT AISK++GKGKLPAQPDHANVSAISLRSGKIL  P
Subjt:  PQGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPP

Query:  SSEEK
        +++EK
Subjt:  SSEEK

A0A5D3CB46 Retrotransposon gag protein2.3e-8877.88Show/hide
Query:  PLLGSD------DAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVTKCGVCGLIGYPNDKCPD
        PL GS+      D AAGGALADKTPTEARELISRMAENS++FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KVTKCGVCGL+G+PNDKCP 
Subjt:  PLLGSD------DAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVTKCGVCGLIGYPNDKCPD

Query:  LVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSA
        ++E+ N++R+YDP  NTYN+GWRDN NLRWGN+NQ+ TQA  TS+NQGTNLED++KALATNT+SFQ +MKQQM+QLT AISK++GKGKLPAQPDHANVSA
Subjt:  LVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSA

Query:  ISLRSGKILQPPSSEEK
        ISLRSGKIL  P+++EK
Subjt:  ISLRSGKILQPPSSEEK

A0A5D3CRR8 Retrotransposon gag protein5.7e-8777.57Show/hide
Query:  LLGSD----DAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVTKCGVCGLIGYPNDKCPDLVE
        LL SD    DA AGGALADK PTEARELIS+MAENSQ+F NRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KVTKCGVCGL+G+PNDKCP+++E
Subjt:  LLGSD----DAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVTKCGVCGLIGYPNDKCPDLVE

Query:  EANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISL
        + N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+ TQA  TS+NQGTNLED++KALATNT+SFQ EMKQQM+QLT AISK++GKGKL AQ ++ANVSA+SL
Subjt:  EANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISL

Query:  RSGKILQPPSSEEK
        RSGKIL  P+++EK
Subjt:  RSGKILQPPSSEEK

E5GBZ4 Retrotransposon gag protein1.3e-8880.98Show/hide
Query:  DAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVTKCGVCGLIGYPNDKCPDLVEEANVIRKYD
        DAAAGGALADKTPTEA ELI RM ENSQNFGNRA ELDN LTKEVSELKSQMLNMTTLLTSFVQG  +KVTKCGVC L+G+PNDKCP+++E+ N++RKYD
Subjt:  DAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVTKCGVCGLIGYPNDKCPDLVEEANVIRKYD

Query:  PQGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPP
        P GNTYN+GWRDNPNLRWGN+NQ+ TQA PTS+NQGTNLED++KALATNT+SFQ EMKQQM+QLT AISK++GKGKLPAQPD+ANVSAISLRSGKIL  P
Subjt:  PQGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPP

Query:  SSEEK
        +++EK
Subjt:  SSEEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCCGTTGCTGGGGAGCGACGATGCTGCAGCAGGTGGTGCTTTAGCTGATAAGACTCCTACTGAAGCAAGAGAGCTAATATCACGGATGGCTGAAAATTCACAAAA
TTTTGGCAACAGAGCATCCGAGCTCGACAATTCATTGACAAAGGAGGTAAGTGAACTTAAATCACAAATGCTTAATATGACTACTCTACTAACCTCTTTTGTGCAAGGTG
GAAATGTGAAAGTTACCAAATGTGGGGTATGTGGATTAATAGGATATCCCAATGATAAGTGCCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCCCAA
GGAAATACTTACAACGCCGGTTGGAGAGACAATCCAAACCTTAGATGGGGAAACAATAATCAACAACCCACGCAAGCAACTCCTACTTCAAACAATCAAGGTACAAATTT
GGAGGATTTGGTAAAAGCTCTTGCTACTAATACAATTTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCAATTAACAAATGCAATAAGCAAGTTAGAAGGCAAAGGTA
AGCTGCCAGCTCAGCCTGATCATGCAAATGTAAGTGCCATCTCACTTAGAAGTGGTAAAATTCTGCAACCTCCTTCAAGTGAAGAAAAGGTATTCCTAGTGGTGGTCCCG
GTTCGGGTTCGGGAGAAGATAACATGGAACGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGCCGTTGCTGGGGAGCGACGATGCTGCAGCAGGTGGTGCTTTAGCTGATAAGACTCCTACTGAAGCAAGAGAGCTAATATCACGGATGGCTGAAAATTCACAAAA
TTTTGGCAACAGAGCATCCGAGCTCGACAATTCATTGACAAAGGAGGTAAGTGAACTTAAATCACAAATGCTTAATATGACTACTCTACTAACCTCTTTTGTGCAAGGTG
GAAATGTGAAAGTTACCAAATGTGGGGTATGTGGATTAATAGGATATCCCAATGATAAGTGCCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCCCAA
GGAAATACTTACAACGCCGGTTGGAGAGACAATCCAAACCTTAGATGGGGAAACAATAATCAACAACCCACGCAAGCAACTCCTACTTCAAACAATCAAGGTACAAATTT
GGAGGATTTGGTAAAAGCTCTTGCTACTAATACAATTTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCAATTAACAAATGCAATAAGCAAGTTAGAAGGCAAAGGTA
AGCTGCCAGCTCAGCCTGATCATGCAAATGTAAGTGCCATCTCACTTAGAAGTGGTAAAATTCTGCAACCTCCTTCAAGTGAAGAAAAGGTATTCCTAGTGGTGGTCCCG
GTTCGGGTTCGGGAGAAGATAACATGGAACGGATAG
Protein sequenceShow/hide protein sequence
MVPLLGSDDAAAGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVTKCGVCGLIGYPNDKCPDLVEEANVIRKYDPQ
GNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPSSEEKVFLVVVP
VRVREKITWNG