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PI0002017 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002017
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr11:18863872..18864793
RNA-Seq ExpressionPI0002017
SyntenyPI0002017
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026149.1 hypothetical protein E6C27_scaffold19G001010 [Cucumis melo var. makuwa]1.5e-0546.55Show/hide
Query:  VETTLQVEKSIRGPRLVVEPSRVVPLVSDFRDQDQKRYTLGVSGKRDFQSNSGGSSLR
        +E +   E S++GPR+ VEPS+  P +S FR +D +RYTLG+S  +DF+ + GG S R
Subjt:  VETTLQVEKSIRGPRLVVEPSRVVPLVSDFRDQDQKRYTLGVSGKRDFQSNSGGSSLR

KAA0066738.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.3e-0446.38Show/hide
Query:  MDQLSQLVETTLQVEKSIRGPRLVVEPSRVVPLVSDFRDQDQKRYT--LGVSGKRDFQSNSGGSSLRIM
        +D+ SQLVET L+VE+SI   +  +E SR V   S  R ++Q+R+T  + VSG +DF+  SGG  LR M
Subjt:  MDQLSQLVETTLQVEKSIRGPRLVVEPSRVVPLVSDFRDQDQKRYT--LGVSGKRDFQSNSGGSSLRIM

KAA0067829.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]4.8e-0447.62Show/hide
Query:  SQLVETTLQVEKSIRGPRLVVEPSRVVPLVSDFRDQDQKRYTLG--VSGKRDFQSNSGGSSLR
        SQLVET L+VE+SI   +  VE SR     S FR ++Q+R+ LG  +S ++DF++ SGG +LR
Subjt:  SQLVETTLQVEKSIRGPRLVVEPSRVVPLVSDFRDQDQKRYTLG--VSGKRDFQSNSGGSSLR

TYK02477.1 uncharacterized protein E5676_scaffold1738G001060 [Cucumis melo var. makuwa]4.8e-0450.77Show/hide
Query:  SQLVETTLQVEKSIRGPRLVVEPSRVVPLVSDFRDQDQKRYTLG--VSGKRDFQSNSGGSSLRIM
        SQLVET LQV +SI   +L VE SR     S FR ++Q R+T G  +SG++DF+S SGG + R M
Subjt:  SQLVETTLQVEKSIRGPRLVVEPSRVVPLVSDFRDQDQKRYTLG--VSGKRDFQSNSGGSSLRIM

TYK06319.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.8e-0447.62Show/hide
Query:  SQLVETTLQVEKSIRGPRLVVEPSRVVPLVSDFRDQDQKRYTLG--VSGKRDFQSNSGGSSLR
        SQLVET L+VE+SI   +  VE SR     S FR ++Q+R+TLG  +S ++DF++ SGG + R
Subjt:  SQLVETTLQVEKSIRGPRLVVEPSRVVPLVSDFRDQDQKRYTLG--VSGKRDFQSNSGGSSLR

TrEMBL top hitse value%identityAlignment
A0A5A7VRP7 Retrotransposon protein, putative, Ty3-gypsy subclass2.3e-0447.62Show/hide
Query:  SQLVETTLQVEKSIRGPRLVVEPSRVVPLVSDFRDQDQKRYTLG--VSGKRDFQSNSGGSSLR
        SQLVET L+VE+SI   +  VE SR     S FR ++Q+R+ LG  +S ++DF++ SGG +LR
Subjt:  SQLVETTLQVEKSIRGPRLVVEPSRVVPLVSDFRDQDQKRYTLG--VSGKRDFQSNSGGSSLR

A0A5D3BSR1 Retrotrans_gag domain-containing protein2.3e-0450.77Show/hide
Query:  SQLVETTLQVEKSIRGPRLVVEPSRVVPLVSDFRDQDQKRYTLG--VSGKRDFQSNSGGSSLRIM
        SQLVET LQV +SI   +L VE SR     S FR ++Q R+T G  +SG++DF+S SGG + R M
Subjt:  SQLVETTLQVEKSIRGPRLVVEPSRVVPLVSDFRDQDQKRYTLG--VSGKRDFQSNSGGSSLRIM

A0A5D3C7J1 Reverse transcriptase2.3e-0447.62Show/hide
Query:  SQLVETTLQVEKSIRGPRLVVEPSRVVPLVSDFRDQDQKRYTLG--VSGKRDFQSNSGGSSLR
        SQLVET L+VE+SI   +  VE SR     S FR ++Q+R+TLG  +S ++DF++ SGG + R
Subjt:  SQLVETTLQVEKSIRGPRLVVEPSRVVPLVSDFRDQDQKRYTLG--VSGKRDFQSNSGGSSLR

A0A5D3CMZ6 Uncharacterized protein7.3e-0646.55Show/hide
Query:  VETTLQVEKSIRGPRLVVEPSRVVPLVSDFRDQDQKRYTLGVSGKRDFQSNSGGSSLR
        +E +   E S++GPR+ VEPS+  P +S FR +D +RYTLG+S  +DF+ + GG S R
Subjt:  VETTLQVEKSIRGPRLVVEPSRVVPLVSDFRDQDQKRYTLGVSGKRDFQSNSGGSSLR

A0A5D3DVW9 DNA/RNA polymerases superfamily protein3.1e-0446.38Show/hide
Query:  MDQLSQLVETTLQVEKSIRGPRLVVEPSRVVPLVSDFRDQDQKRYT--LGVSGKRDFQSNSGGSSLRIM
        +D+ SQLVET L+VE+SI   +  +E SR V   S  R ++Q+R+T  + VSG +DF+  SGG  LR M
Subjt:  MDQLSQLVETTLQVEKSIRGPRLVVEPSRVVPLVSDFRDQDQKRYT--LGVSGKRDFQSNSGGSSLRIM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCAACTTTCCCAGTTGGTAGAGACAACTTTGCAAGTGGAGAAGAGCATAAGGGGACCAAGGTTAGTGGTGGAGCCTAGTAGAGTGGTTCCTTTAGTGAGCGACTT
TAGAGACCAAGATCAGAAGAGGTATACACTTGGTGTATCTGGTAAGCGAGATTTTCAGAGCAATTCTGGTGGTTCGTCTTTGAGGATAATGTGCAAAGCCCCTTCACAAG
CCCTTGTGCACAAAAGTAAGCTAAAACAAGCTTCTTGCCGCCAGAAACTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACCAACTTTCCCAGTTGGTAGAGACAACTTTGCAAGTGGAGAAGAGCATAAGGGGACCAAGGTTAGTGGTGGAGCCTAGTAGAGTGGTTCCTTTAGTGAGCGACTT
TAGAGACCAAGATCAGAAGAGGTATACACTTGGTGTATCTGGTAAGCGAGATTTTCAGAGCAATTCTGGTGGTTCGTCTTTGAGGATAATGTGCAAAGCCCCTTCACAAG
CCCTTGTGCACAAAAGTAAGCTAAAACAAGCTTCTTGCCGCCAGAAACTATGA
Protein sequenceShow/hide protein sequence
MDQLSQLVETTLQVEKSIRGPRLVVEPSRVVPLVSDFRDQDQKRYTLGVSGKRDFQSNSGGSSLRIMCKAPSQALVHKSKLKQASCRQKL