CuGenDBv2

Gene ID	PI0002018
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	PMD domain-containing protein
Genome location	chr09:12209720..12210313
RNA-Seq Expression	PI0002018
Synteny	PI0002018
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0046254.1 hypothetical protein E6C27_scaffold284G00570 [Cucumis melo var. makuwa]

2.5e-53

79.25

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Query:  MRTPFEYIPRLRSEIAKVLSGIAKIQADNLTPLEEYLISYLKRVDSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEALTLMDQLREDAKVIQERATQLSL
        MRTPFEYIPRLR EIA VLSGI KI AD LT LEEYL SYLKRVD+FNDVQSSYSAQLL  DK RQL+EKTSAIKEALTL+ QLR DAKVIQER  +LSL
Subjt:  MRTPFEYIPRLRSEIAKVLSGIAKIQADNLTPLEEYLISYLKRVDSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEALTLMDQLREDAKVIQERATQLSL

Query:  EKKELESRLQSINTESEQLSILSFEKNEAIDRKELEVAKLQDEANALESTLLLPKKPLR
        E+KELE RL+SIN ESEQLSILS EK EAID++ELEVAKLQDE N LE TLLL +K  R
Subjt:  EKKELESRLQSINTESEQLSILSFEKNEAIDRKELEVAKLQDEANALESTLLLPKKPLR

KAA0052363.1 hypothetical protein E6C27_scaffold207G002060 [Cucumis melo var. makuwa]

6.5e-54

82.67

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Query:  MRTPFEYIPRLRSEIAKVLSGIAKIQADNLTPLEEYLISYLKRVDSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEALTLMDQLREDAKVIQERATQLSL
        MRTPFEYIPRLR EIA VLSGI KI AD LT LEEYL SYLKRVD+FNDVQSSYSAQL LTDK RQL+EKTSAIKEALTL+ QLR DAKVIQER  +LSL
Subjt:  MRTPFEYIPRLRSEIAKVLSGIAKIQADNLTPLEEYLISYLKRVDSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEALTLMDQLREDAKVIQERATQLSL

Query:  EKKELESRLQSINTESEQLSILSFEKNEAIDRKELEVAKLQDEANALEST
        E+KELE RLQSIN ESEQLSILS+EK EAID++ELEVAKLQDE N LEST
Subjt:  EKKELESRLQSINTESEQLSILSFEKNEAIDRKELEVAKLQDEANALEST

KAA0060431.1 hypothetical protein E6C27_scaffold22G002540 [Cucumis melo var. makuwa]

5.5e-53

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Query:  MRTPFEYIPRLRSEIAKVLSGIAKIQADNLTPLEEYLISYLKRVDSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEALTLMDQLREDAKVIQERATQLSL
        MRTPFEYIPRLR EIA VLSGI KI  + LTPLEEYL SYLKRVD+FNDVQSSYSAQLL TDK RQLDEKTSAI+EALTLM++LREDA VIQERA QLSL
Subjt:  MRTPFEYIPRLRSEIAKVLSGIAKIQADNLTPLEEYLISYLKRVDSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEALTLMDQLREDAKVIQERATQLSL

Query:  EKKELESRLQSINTESEQLSILSFEKNEAIDRKELEVAKLQDEANALEST
        EKKELE RLQS+N ESEQLSILS EK EAI ++ELEVAKLQDE N LE T
Subjt:  EKKELESRLQSINTESEQLSILSFEKNEAIDRKELEVAKLQDEANALEST

KAA0065375.1 hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa]

2.1e-52

81.33

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Query:  MRTPFEYIPRLRSEIAKVLSGIAKIQADNLTPLEEYLISYLKRVDSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEALTLMDQLREDAKVIQERATQLSL
        MRTPFEYIPRLR EIA VLSGI KI AD LT LEEYL SYLKRVD+FNDVQSSYSAQLL TDK RQL+EKTSAIKE LTL+ QLR DAKVIQER  +LSL
Subjt:  MRTPFEYIPRLRSEIAKVLSGIAKIQADNLTPLEEYLISYLKRVDSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEALTLMDQLREDAKVIQERATQLSL

Query:  EKKELESRLQSINTESEQLSILSFEKNEAIDRKELEVAKLQDEANALEST
        E+KELE RL+SIN ESEQLSILS EK EAID++ELEVAKLQDE N LEST
Subjt:  EKKELESRLQSINTESEQLSILSFEKNEAIDRKELEVAKLQDEANALEST

TYK03767.1 hypothetical protein E5676_scaffold863G001500 [Cucumis melo var. makuwa]

2.1e-52

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Query:  MRTPFEYIPRLRSEIAKVLSGIAKIQADNLTPLEEYLISYLKRVDSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEALTLMDQLREDAKVIQERATQLSL
        MRT FEYIPRLR EIA VLSGI KI AD LT LEEYL SYLKRVD+FNDVQSSYSAQLL TDK RQL+EKTSAIKEALTL+ QLR DAKVIQER  +LSL
Subjt:  MRTPFEYIPRLRSEIAKVLSGIAKIQADNLTPLEEYLISYLKRVDSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEALTLMDQLREDAKVIQERATQLSL

Query:  EKKELESRLQSINTESEQLSILSFEKNEAIDRKELEVAKLQDEANALEST
        E+KELE RLQSIN ESEQLSILS EK EAID++ELEVAKLQDE N LEST
Subjt:  EKKELESRLQSINTESEQLSILSFEKNEAIDRKELEVAKLQDEANALEST

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TT69 Uncharacterized protein

1.2e-53

79.25

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Query:  MRTPFEYIPRLRSEIAKVLSGIAKIQADNLTPLEEYLISYLKRVDSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEALTLMDQLREDAKVIQERATQLSL
        MRTPFEYIPRLR EIA VLSGI KI AD LT LEEYL SYLKRVD+FNDVQSSYSAQLL  DK RQL+EKTSAIKEALTL+ QLR DAKVIQER  +LSL
Subjt:  MRTPFEYIPRLRSEIAKVLSGIAKIQADNLTPLEEYLISYLKRVDSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEALTLMDQLREDAKVIQERATQLSL

Query:  EKKELESRLQSINTESEQLSILSFEKNEAIDRKELEVAKLQDEANALESTLLLPKKPLR
        E+KELE RL+SIN ESEQLSILS EK EAID++ELEVAKLQDE N LE TLLL +K  R
Subjt:  EKKELESRLQSINTESEQLSILSFEKNEAIDRKELEVAKLQDEANALESTLLLPKKPLR

A0A5A7U8X8 PMD domain-containing protein

3.2e-54

82.67

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Query:  MRTPFEYIPRLRSEIAKVLSGIAKIQADNLTPLEEYLISYLKRVDSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEALTLMDQLREDAKVIQERATQLSL
        MRTPFEYIPRLR EIA VLSGI KI AD LT LEEYL SYLKRVD+FNDVQSSYSAQL LTDK RQL+EKTSAIKEALTL+ QLR DAKVIQER  +LSL
Subjt:  MRTPFEYIPRLRSEIAKVLSGIAKIQADNLTPLEEYLISYLKRVDSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEALTLMDQLREDAKVIQERATQLSL

Query:  EKKELESRLQSINTESEQLSILSFEKNEAIDRKELEVAKLQDEANALEST
        E+KELE RLQSIN ESEQLSILS+EK EAID++ELEVAKLQDE N LEST
Subjt:  EKKELESRLQSINTESEQLSILSFEKNEAIDRKELEVAKLQDEANALEST

A0A5A7V3X5 PMD domain-containing protein

2.7e-53

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Query:  MRTPFEYIPRLRSEIAKVLSGIAKIQADNLTPLEEYLISYLKRVDSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEALTLMDQLREDAKVIQERATQLSL
        MRTPFEYIPRLR EIA VLSGI KI  + LTPLEEYL SYLKRVD+FNDVQSSYSAQLL TDK RQLDEKTSAI+EALTLM++LREDA VIQERA QLSL
Subjt:  MRTPFEYIPRLRSEIAKVLSGIAKIQADNLTPLEEYLISYLKRVDSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEALTLMDQLREDAKVIQERATQLSL

Query:  EKKELESRLQSINTESEQLSILSFEKNEAIDRKELEVAKLQDEANALEST
        EKKELE RLQS+N ESEQLSILS EK EAI ++ELEVAKLQDE N LE T
Subjt:  EKKELESRLQSINTESEQLSILSFEKNEAIDRKELEVAKLQDEANALEST

A0A5A7VHW8 PMD domain-containing protein

1.0e-52

81.33

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Query:  MRTPFEYIPRLRSEIAKVLSGIAKIQADNLTPLEEYLISYLKRVDSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEALTLMDQLREDAKVIQERATQLSL
        MRTPFEYIPRLR EIA VLSGI KI AD LT LEEYL SYLKRVD+FNDVQSSYSAQLL TDK RQL+EKTSAIKE LTL+ QLR DAKVIQER  +LSL
Subjt:  MRTPFEYIPRLRSEIAKVLSGIAKIQADNLTPLEEYLISYLKRVDSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEALTLMDQLREDAKVIQERATQLSL

Query:  EKKELESRLQSINTESEQLSILSFEKNEAIDRKELEVAKLQDEANALEST
        E+KELE RL+SIN ESEQLSILS EK EAID++ELEVAKLQDE N LEST
Subjt:  EKKELESRLQSINTESEQLSILSFEKNEAIDRKELEVAKLQDEANALEST

A0A5D3BW91 Uncharacterized protein

1.0e-52

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Query:  MRTPFEYIPRLRSEIAKVLSGIAKIQADNLTPLEEYLISYLKRVDSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEALTLMDQLREDAKVIQERATQLSL
        MRT FEYIPRLR EIA VLSGI KI AD LT LEEYL SYLKRVD+FNDVQSSYSAQLL TDK RQL+EKTSAIKEALTL+ QLR DAKVIQER  +LSL
Subjt:  MRTPFEYIPRLRSEIAKVLSGIAKIQADNLTPLEEYLISYLKRVDSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEALTLMDQLREDAKVIQERATQLSL

Query:  EKKELESRLQSINTESEQLSILSFEKNEAIDRKELEVAKLQDEANALEST
        E+KELE RLQSIN ESEQLSILS EK EAID++ELEVAKLQDE N LEST
Subjt:  EKKELESRLQSINTESEQLSILSFEKNEAIDRKELEVAKLQDEANALEST

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCGCACTCCTTTTGAATATATCCCAAGACTTAGGTCGGAAATAGCAAAGGTCCTTTCAGGAATTGCAAAGATCCAAGCAGACAACCTGACTCCTCTTGAAGAATATTT
GATTAGCTACCTTAAGAGGGTAGACAGCTTCAATGATGTACAATCTTCATATTCCGCACAACTGCTGTTGACGGATAAAACTCGTCAATTGGACGAGAAGACATCTGCCA
TCAAAGAAGCCTTGACTTTGATGGACCAACTACGAGAAGATGCCAAAGTTATTCAGGAGAGGGCTACGCAGTTATCTTTGGAAAAGAAAGAACTGGAGAGCAGACTTCAG
AGTATAAATACTGAGTCGGAACAACTATCCATTTTATCTTTTGAGAAAAATGAGGCTATAGATAGGAAGGAACTGGAAGTTGCTAAGCTCCAAGATGAAGCCAATGCTCT
TGAAAGCACCCTGCTATTACCGAAGAAGCCACTAAGACCTTGGCTACGGTTCGTAAGAGTATGGAGGTTGCACATGAAGAATTCAGGAACTTCAAGTGGAAGCTTTGACT
TTGCCCCCCCTTTGCTCCGCATTTTTTTATTGTCTTTGCTATAA

mRNA sequence

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Protein sequence

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MRTPFEYIPRLRSEIAKVLSGIAKIQADNLTPLEEYLISYLKRVDSFNDVQSSYSAQLLLTDKTRQLDEKTSAIKEALTLMDQLREDAKVIQERATQLSLEKKELESRLQ
SINTESEQLSILSFEKNEAIDRKELEVAKLQDEANALESTLLLPKKPLRPWLRFVRVWRLHMKNSGTSSGSFDFAPPLLRIFLLSLL

PI0002018 (gene) of Melon (PI 482460) v1 genome