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PI0002031 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002031
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr11:19808889..19809508
RNA-Seq ExpressionPI0002031
SyntenyPI0002031
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060174.1 hypothetical protein E6C27_scaffold542G00490 [Cucumis melo var. makuwa]4.3e-1350Show/hide
Query:  ALFLLTLMDEAKRWAGSLDAGEITTWTQLACLHNGM----------QYILIEVFYARLSEVTQQAADAVFMGGMLKNTYTQIKTTLDFMA
        +LF LTL DEAKRW  SL+ GE+TTW  L  +   M          + +L++VFY  L++ TQQ  DAVF+GG+L++ Y+QIKTT+DFMA
Subjt:  ALFLLTLMDEAKRWAGSLDAGEITTWTQLACLHNGM----------QYILIEVFYARLSEVTQQAADAVFMGGMLKNTYTQIKTTLDFMA

WP_217833177.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]1.9e-1633.33Show/hide
Query:  MKPILLQMIQTAGQFGGHLGEDPHDHI------------PGITQKELNSALFLLTLMDEAKRWAGSLDAGEITTWTQLA---------------------
        MKP++LQM+Q AGQFGG  GEDPH H+             G+ Q  +   LF  +L DEA++WA S + GEITTW ++                      
Subjt:  MKPILLQMIQTAGQFGGHLGEDPHDHI------------PGITQKELNSALFLLTLMDEAKRWAGSLDAGEITTWTQLA---------------------

Query:  -----------------------CLHNGM-QYILIEVFYARLSEVTQQAADAVFMGGMLKNTYTQIKTTLD
                               C HNG+   + +E+FY  L++ +Q  ADA   GG++  TYTQ K  LD
Subjt:  -----------------------CLHNGM-QYILIEVFYARLSEVTQQAADAVFMGGMLKNTYTQIKTTLD

XP_038889341.1 uncharacterized protein LOC120079252 [Benincasa hispida]3.5e-1543.7Show/hide
Query:  MIQTAGQFGGHLGEDPHDH------------IPGITQKELNSALFLLTLMDEAKRWAGSLDAGEITTWTQLACLHNGMQYILIEVFYARLSEVTQQAADA
        MIQ AGQF G  GEDPH H            +PG+T + +   LF  TL DEAK+WA SL+  EIT+W QL  +      +L+E FY  L+  TQ   DA
Subjt:  MIQTAGQFGGHLGEDPHDH------------IPGITQKELNSALFLLTLMDEAKRWAGSLDAGEITTWTQLACLHNGMQYILIEVFYARLSEVTQQAADA

Query:  VFMGGMLKNTYTQIKTTLD
           GG +  TYT+ K  LD
Subjt:  VFMGGMLKNTYTQIKTTLD

XP_038896304.1 uncharacterized protein LOC120084573 [Benincasa hispida]1.7e-1442.06Show/hide
Query:  MKPILLQMIQTAGQFGGHLGEDPHDH------------IPGITQKELNSALFLLTLMDEAKRWAGSLDAGEITTWTQLACLHNGMQYILIEVFYARLSEV
        +KPI+LQMIQ AG+FGG  GED H H            IP +T + +   LF  TL DEAKRWA SL++ EI  W QL                  L   
Subjt:  MKPILLQMIQTAGQFGGHLGEDPHDH------------IPGITQKELNSALFLLTLMDEAKRWAGSLDAGEITTWTQLACLHNGMQYILIEVFYARLSEV

Query:  TQQAADAVFMGGMLKNTYTQIKTTLD
        TQ  ADA   GG++  TYT+ K  LD
Subjt:  TQQAADAVFMGGMLKNTYTQIKTTLD

XP_038896595.1 uncharacterized protein LOC120084850 [Benincasa hispida]1.6e-1536.09Show/hide
Query:  MKPILLQMIQTAGQFGGHLGEDPHDH------------IPGITQKELNSALFLLTLMDEAKRWAGSLDAGEITTWTQLA-------CLHNGM-QYILIEV
        ++ I+LQMIQ AG+FGG  GEDPH H            IP ++ + +   +F  TL DEA+RWA SL+  EI  W QL        CLH G+   +L+E 
Subjt:  MKPILLQMIQTAGQFGGHLGEDPHDH------------IPGITQKELNSALFLLTLMDEAKRWAGSLDAGEITTWTQLA-------CLHNGM-QYILIEV

Query:  FYARLSEVTQQAADAVFMGGMLKNTYTQIKTTLDFMAITIKNGKAITLALAMEGGKEMKKEDGGTTRID
         Y  L    Q  ADA    G++  TYT+ K  LD ++   +N          E G E ++ +G    ID
Subjt:  FYARLSEVTQQAADAVFMGGMLKNTYTQIKTTLDFMAITIKNGKAITLALAMEGGKEMKKEDGGTTRID

TrEMBL top hitse value%identityAlignment
A0A392MI20 Retrotrans_gag domain-containing protein2.6e-0843.59Show/hide
Query:  KPILLQMIQTAGQFGGHLGEDPHDHI------------PGITQKELNSALFLLTLMDEAKRWAGSLDAGEITTWTQLA
        KPI+ QM+Q  GQF G   EDPH H+            PGITQ+     LF  +L D AK W  SL+   I+TW  LA
Subjt:  KPILLQMIQTAGQFGGHLGEDPHDHI------------PGITQKELNSALFLLTLMDEAKRWAGSLDAGEITTWTQLA

A0A392NJS3 Uncharacterized protein (Fragment)2.4e-0932.39Show/hide
Query:  KPILLQMIQTAGQFGGHLGEDPHDH------------IPGITQKELNSALFLLTLMDEAKRWAGSLDAGEITTWTQLA----------------------
        KP++ QM+Q  GQF G   EDPH H            IPGITQ+     LFL +L D  K W  SL+   I+TW  LA                      
Subjt:  KPILLQMIQTAGQFGGHLGEDPHDH------------IPGITQKELNSALFLLTLMDEAKRWAGSLDAGEITTWTQLA----------------------

Query:  CLHNGM-QYILIEVFYARLSEVTQQAADAVFMGGMLKNTYTQ
        C H G+   I +E FY  L   ++   D    G +L  +Y +
Subjt:  CLHNGM-QYILIEVFYARLSEVTQQAADAVFMGGMLKNTYTQ

A0A5A7TNS8 Uncharacterized protein3.7e-1033.82Show/hide
Query:  MKPILLQMIQTAGQFGGHLGEDPHDHI------------PGITQKELNSALFLLTLMDEAKRWAGSLDAGEITTWTQLACLHNGMQYILIEVFYARLSEV
        MKP +L MIQT  QFGG+L EDP DHI            P ++Q++L+   F  TL D+ K+W G+L+                            ++  
Subjt:  MKPILLQMIQTAGQFGGHLGEDPHDHI------------PGITQKELNSALFLLTLMDEAKRWAGSLDAGEITTWTQLACLHNGMQYILIEVFYARLSEV

Query:  TQQAADAVF--MGGMLKNTYTQIKTTLDFMAITIKN
        TQ   D +F   G +++ TYTQIK TLD M+   +N
Subjt:  TQQAADAVF--MGGMLKNTYTQIKTTLDFMAITIKN

A0A5A7UYP0 Retrotrans_gag domain-containing protein2.1e-1350Show/hide
Query:  ALFLLTLMDEAKRWAGSLDAGEITTWTQLACLHNGM----------QYILIEVFYARLSEVTQQAADAVFMGGMLKNTYTQIKTTLDFMA
        +LF LTL DEAKRW  SL+ GE+TTW  L  +   M          + +L++VFY  L++ TQQ  DAVF+GG+L++ Y+QIKTT+DFMA
Subjt:  ALFLLTLMDEAKRWAGSLDAGEITTWTQLACLHNGM----------QYILIEVFYARLSEVTQQAADAVFMGGMLKNTYTQIKTTLDFMA

A0A5A7V1F3 Retrotrans_gag domain-containing protein1.5e-0835.04Show/hide
Query:  DEAKRWAGSLDAGEITTWTQL--------------------------------------------ACLHNGM-QYILIEVFYARLSEVTQQAADAVFMGG
        D+AKRWA S++ GE+TTW  L                                            ACLH+G+ +Y+L+E FY  LS+ T+Q+AD++F+GG
Subjt:  DEAKRWAGSLDAGEITTWTQL--------------------------------------------ACLHNGM-QYILIEVFYARLSEVTQQAADAVFMGG

Query:  MLKNTYTQIKTTLDFMA
        +L+++Y QIK  LD MA
Subjt:  MLKNTYTQIKTTLDFMA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCCAATCCTACTTCAGATGATCCAAACTGCTGGCCAATTCGGGGGACATCTAGGCGAAGACCCACATGACCACATCCCTGGTATTACGCAAAAAGAGCTCAATTC
CGCATTATTCTTGCTTACTCTGATGGATGAGGCAAAACGATGGGCTGGATCACTAGATGCAGGGGAAATAACTACATGGACTCAACTGGCGTGCCTTCACAATGGCATGC
AGTACATCCTCATAGAGGTGTTTTATGCTAGGCTGAGCGAAGTGACACAACAGGCCGCTGATGCTGTGTTTATGGGTGGGATGTTGAAAAACACATACACCCAGATTAAG
ACTACGTTGGACTTTATGGCCATAACAATCAAGAATGGGAAGGCAATTACTTTGGCTCTCGCCATGGAAGGAGGCAAGGAAATGAAAAAGGAGGATGGTGGCACTACAAG
GATAGATTACTGCCACGAACAATCTACTGCAATCTATGACGTTAATGAAAGTGAATGTCGTAGGACGATCTGTTCAAACGGTAAAACAAATGGAGGATATTGGATGCGTG
GGATGCAGAGGTCCTCACAACACCGACGCATGCCCACAAAACACTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCCAATCCTACTTCAGATGATCCAAACTGCTGGCCAATTCGGGGGACATCTAGGCGAAGACCCACATGACCACATCCCTGGTATTACGCAAAAAGAGCTCAATTC
CGCATTATTCTTGCTTACTCTGATGGATGAGGCAAAACGATGGGCTGGATCACTAGATGCAGGGGAAATAACTACATGGACTCAACTGGCGTGCCTTCACAATGGCATGC
AGTACATCCTCATAGAGGTGTTTTATGCTAGGCTGAGCGAAGTGACACAACAGGCCGCTGATGCTGTGTTTATGGGTGGGATGTTGAAAAACACATACACCCAGATTAAG
ACTACGTTGGACTTTATGGCCATAACAATCAAGAATGGGAAGGCAATTACTTTGGCTCTCGCCATGGAAGGAGGCAAGGAAATGAAAAAGGAGGATGGTGGCACTACAAG
GATAGATTACTGCCACGAACAATCTACTGCAATCTATGACGTTAATGAAAGTGAATGTCGTAGGACGATCTGTTCAAACGGTAAAACAAATGGAGGATATTGGATGCGTG
GGATGCAGAGGTCCTCACAACACCGACGCATGCCCACAAAACACTAA
Protein sequenceShow/hide protein sequence
MKPILLQMIQTAGQFGGHLGEDPHDHIPGITQKELNSALFLLTLMDEAKRWAGSLDAGEITTWTQLACLHNGMQYILIEVFYARLSEVTQQAADAVFMGGMLKNTYTQIK
TTLDFMAITIKNGKAITLALAMEGGKEMKKEDGGTTRIDYCHEQSTAIYDVNESECRRTICSNGKTNGGYWMRGMQRSSQHRRMPTKH