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PI0002135 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002135
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr12:10138726..10139543
RNA-Seq ExpressionPI0002135
SyntenyPI0002135
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041114.1 hypothetical protein E6C27_scaffold128G00170 [Cucumis melo var. makuwa]2.6e-0951.04Show/hide
Query:  SDFSRRPQGSLPSNTETLSQAGGSGKEKYHTVTLRSERNLTIRDP--DTERRNPTSHSTAQIGSSSNISNPVHFSLTNNISSSQNKDVPSKGMEST
        SD   +  G LPSNTE  +Q GGSGKEK   V L+S RN T  +   + E R+ TS  T +I +SS+ SNP++F LTNN SS QNK VP+K +E+T
Subjt:  SDFSRRPQGSLPSNTETLSQAGGSGKEKYHTVTLRSERNLTIRDP--DTERRNPTSHSTAQIGSSSNISNPVHFSLTNNISSSQNKDVPSKGMEST

KAA0041246.1 uncharacterized protein E6C27_scaffold128G002220 [Cucumis melo var. makuwa]1.5e-2548.21Show/hide
Query:  MNNLLKSMEISQVNAAGDSVQAANQIDDMGCVGCGSPHNTDACPLNTKTVAFPSFINSQSGS------AIRAVASDFSRRPQGSLPSNTETLSQAGGSGK
        MN LL+S+ + QVN  G+ +QA  Q +D                         + + SQ+ S       +  + S+ SRRP+GSLPSNTET +Q GGSGK
Subjt:  MNNLLKSMEISQVNAAGDSVQAANQIDDMGCVGCGSPHNTDACPLNTKTVAFPSFINSQSGS------AIRAVASDFSRRPQGSLPSNTETLSQAGGSGK

Query:  EKYHTVTLRSERNLTIRDPDTERRNPTSHSTAQIGSSSNISNPVHFSLTNNISSSQNKDVPSKGMEST
        EK   VTLRS RNLTIR+P  ERRN TS ST +IGS+SN SNP++ SLTNN SS QNK++P+K +EST
Subjt:  EKYHTVTLRSERNLTIRDPDTERRNPTSHSTAQIGSSSNISNPVHFSLTNNISSSQNKDVPSKGMEST

KAA0048713.1 hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa]1.9e-1244.86Show/hide
Query:  NLLKSMEISQVNAAGDSVQAANQIDDMGCVGCGSPHNTDACPLNTKTVAF---------------PSFINSQSGS------AIRAVASDFSRRPQGSLPS
        N+L+SM + QVN    SVQ   Q+++MGCVGC +PHNT+ACPLNT+ VA+                + I+SQ+ S       +  + SDFSRRP+ S PS
Subjt:  NLLKSMEISQVNAAGDSVQAANQIDDMGCVGCGSPHNTDACPLNTKTVAF---------------PSFINSQSGS------AIRAVASDFSRRPQGSLPS

Query:  NTETLSQ
        NTET +Q
Subjt:  NTETLSQ

KAA0053420.1 hypothetical protein E6C27_scaffold428G00900 [Cucumis melo var. makuwa]1.4e-1053.95Show/hide
Query:  SQAGGSGKEKYHTVTLRSERNLTIRDPDTERRNPTSHSTAQIGSSSNISNPVHFSLTNNISSSQNKDVPSKGMEST
        +QAGGS KEKY  +TL+S RNLTIR+P++  +NPTS ST ++ +SS  S P++FSLTN+ SS Q  ++P+K ++ST
Subjt:  SQAGGSGKEKYHTVTLRSERNLTIRDPDTERRNPTSHSTAQIGSSSNISNPVHFSLTNNISSSQNKDVPSKGMEST

TYK21908.1 hypothetical protein E5676_scaffold494G00460 [Cucumis melo var. makuwa]1.2e-0951.04Show/hide
Query:  SDFSRRPQGSLPSNTETLSQAGGSGKEKYHTVTLRSERNLTI--RDPDTERRNPTSHSTAQIGSSSNISNPVHFSLTNNISSSQNKDVPSKGMEST
        SD   + +G LPSNTE  +Q GGS KEK   V L+S RN T     P+ E R+ TS  T +I +SS+ SNP++F LTNN SS QNK VP+K +E+T
Subjt:  SDFSRRPQGSLPSNTETLSQAGGSGKEKYHTVTLRSERNLTI--RDPDTERRNPTSHSTAQIGSSSNISNPVHFSLTNNISSSQNKDVPSKGMEST

TrEMBL top hitse value%identityAlignment
A0A5A7TCC3 Uncharacterized protein1.3e-0951.04Show/hide
Query:  SDFSRRPQGSLPSNTETLSQAGGSGKEKYHTVTLRSERNLTIRDP--DTERRNPTSHSTAQIGSSSNISNPVHFSLTNNISSSQNKDVPSKGMEST
        SD   +  G LPSNTE  +Q GGSGKEK   V L+S RN T  +   + E R+ TS  T +I +SS+ SNP++F LTNN SS QNK VP+K +E+T
Subjt:  SDFSRRPQGSLPSNTETLSQAGGSGKEKYHTVTLRSERNLTIRDP--DTERRNPTSHSTAQIGSSSNISNPVHFSLTNNISSSQNKDVPSKGMEST

A0A5A7TGS2 Uncharacterized protein7.4e-2648.21Show/hide
Query:  MNNLLKSMEISQVNAAGDSVQAANQIDDMGCVGCGSPHNTDACPLNTKTVAFPSFINSQSGS------AIRAVASDFSRRPQGSLPSNTETLSQAGGSGK
        MN LL+S+ + QVN  G+ +QA  Q +D                         + + SQ+ S       +  + S+ SRRP+GSLPSNTET +Q GGSGK
Subjt:  MNNLLKSMEISQVNAAGDSVQAANQIDDMGCVGCGSPHNTDACPLNTKTVAFPSFINSQSGS------AIRAVASDFSRRPQGSLPSNTETLSQAGGSGK

Query:  EKYHTVTLRSERNLTIRDPDTERRNPTSHSTAQIGSSSNISNPVHFSLTNNISSSQNKDVPSKGMEST
        EK   VTLRS RNLTIR+P  ERRN TS ST +IGS+SN SNP++ SLTNN SS QNK++P+K +EST
Subjt:  EKYHTVTLRSERNLTIRDPDTERRNPTSHSTAQIGSSSNISNPVHFSLTNNISSSQNKDVPSKGMEST

A0A5A7UDZ7 Uncharacterized protein6.7e-1153.95Show/hide
Query:  SQAGGSGKEKYHTVTLRSERNLTIRDPDTERRNPTSHSTAQIGSSSNISNPVHFSLTNNISSSQNKDVPSKGMEST
        +QAGGS KEKY  +TL+S RNLTIR+P++  +NPTS ST ++ +SS  S P++FSLTN+ SS Q  ++P+K ++ST
Subjt:  SQAGGSGKEKYHTVTLRSERNLTIRDPDTERRNPTSHSTAQIGSSSNISNPVHFSLTNNISSSQNKDVPSKGMEST

A0A5D3CC26 Uncharacterized protein9.4e-1344.86Show/hide
Query:  NLLKSMEISQVNAAGDSVQAANQIDDMGCVGCGSPHNTDACPLNTKTVAF---------------PSFINSQSGS------AIRAVASDFSRRPQGSLPS
        N+L+SM + QVN    SVQ   Q+++MGCVGC +PHNT+ACPLNT+ VA+                + I+SQ+ S       +  + SDFSRRP+ S PS
Subjt:  NLLKSMEISQVNAAGDSVQAANQIDDMGCVGCGSPHNTDACPLNTKTVAF---------------PSFINSQSGS------AIRAVASDFSRRPQGSLPS

Query:  NTETLSQ
        NTET +Q
Subjt:  NTETLSQ

A0A5D3DEN2 Uncharacterized protein5.7e-1051.04Show/hide
Query:  SDFSRRPQGSLPSNTETLSQAGGSGKEKYHTVTLRSERNLTI--RDPDTERRNPTSHSTAQIGSSSNISNPVHFSLTNNISSSQNKDVPSKGMEST
        SD   + +G LPSNTE  +Q GGS KEK   V L+S RN T     P+ E R+ TS  T +I +SS+ SNP++F LTNN SS QNK VP+K +E+T
Subjt:  SDFSRRPQGSLPSNTETLSQAGGSGKEKYHTVTLRSERNLTI--RDPDTERRNPTSHSTAQIGSSSNISNPVHFSLTNNISSSQNKDVPSKGMEST

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGCGATGAACAATCTTCTCAAATCTATGGAAATATCGCAAGTCAATGCCGCAGGAGACTCTGTGCAAGCGGCAAATCAAATTGATGATATGGGATGTGTGGGATG
TGGCAGTCCTCATAATACTGACGCATGCCCACTCAATACAAAAACTGTCGCGTTCCCAAGCTTCATCAATTCGCAATCTGGAAGTGCAATTAGAGCAGTAGCCAGCGACT
TCTCCAGAAGGCCACAAGGATCCCTCCCAAGTAATACAGAAACGCTAAGCCAGGCGGGGGGATCTGGAAAAGAGAAGTATCACACGGTGACACTACGAAGCGAAAGGAAT
TTGACCATCCGCGATCCTGATACTGAACGTAGAAACCCCACTTCTCATTCTACTGCGCAGATTGGCAGCTCAAGTAACATTTCTAATCCTGTACATTTCTCTTTAACTAA
CAATATTTCTTCCTCGCAGAATAAAGACGTGCCAAGCAAGGGCATGGAGAGCACGGACAACGTGATCAATGGAGTGAAGGGTCTCAACAGGCGACGAGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGCGATGAACAATCTTCTCAAATCTATGGAAATATCGCAAGTCAATGCCGCAGGAGACTCTGTGCAAGCGGCAAATCAAATTGATGATATGGGATGTGTGGGATG
TGGCAGTCCTCATAATACTGACGCATGCCCACTCAATACAAAAACTGTCGCGTTCCCAAGCTTCATCAATTCGCAATCTGGAAGTGCAATTAGAGCAGTAGCCAGCGACT
TCTCCAGAAGGCCACAAGGATCCCTCCCAAGTAATACAGAAACGCTAAGCCAGGCGGGGGGATCTGGAAAAGAGAAGTATCACACGGTGACACTACGAAGCGAAAGGAAT
TTGACCATCCGCGATCCTGATACTGAACGTAGAAACCCCACTTCTCATTCTACTGCGCAGATTGGCAGCTCAAGTAACATTTCTAATCCTGTACATTTCTCTTTAACTAA
CAATATTTCTTCCTCGCAGAATAAAGACGTGCCAAGCAAGGGCATGGAGAGCACGGACAACGTGATCAATGGAGTGAAGGGTCTCAACAGGCGACGAGCTTGA
Protein sequenceShow/hide protein sequence
MTAMNNLLKSMEISQVNAAGDSVQAANQIDDMGCVGCGSPHNTDACPLNTKTVAFPSFINSQSGSAIRAVASDFSRRPQGSLPSNTETLSQAGGSGKEKYHTVTLRSERN
LTIRDPDTERRNPTSHSTAQIGSSSNISNPVHFSLTNNISSSQNKDVPSKGMESTDNVINGVKGLNRRRA