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PI0002146 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002146
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr03:13187849..13188308
RNA-Seq ExpressionPI0002146
SyntenyPI0002146
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032798.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.4e-3555.78Show/hide
Query:  MLNITTLLTFFVQGGPLKVTKCGVCGLVGHPNDNCSELIEDVNAIRKYDPHSNTYNLRWRDNPNLRWGNDNQKPTQAISSSLNQASWLGKVSFWANR---
        MLN+TTLLT FVQG PLKVTKCGVCGLVG+PND C ++IEDVN +R+YDPH NTYNL WRDNPNLRWGNDNQK TQA  +S NQ + L  +   A     
Subjt:  MLNITTLLTFFVQGGPLKVTKCGVCGLVGHPNDNCSELIEDVNAIRKYDPHSNTYNLRWRDNPNLRWGNDNQKPTQAISSSLNQASWLGKVSFWANR---

Query:  --------------------------GGPNHANMSTFSLRSGKILDT
                                    P+H N+S  SLRSGKILDT
Subjt:  --------------------------GGPNHANMSTFSLRSGKILDT

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.1e-3558.11Show/hide
Query:  MLNITTLLTFFVQGGPLKVTKCGVCGLVGHPNDNCSELIEDVNAIRKYDPHSNTYNLRWRDNPNLRWGNDNQKPTQAISSSLNQASWL---------GKV
        MLN+TTLLT FVQG PLKVTKCGVCGLVGHPND C E+IEDVN +RKYDPH NTYN  WRDNPNLRWGNDNQK TQA S+S NQ + L           +
Subjt:  MLNITTLLTFFVQGGPLKVTKCGVCGLVGHPNDNCSELIEDVNAIRKYDPHSNTYNLRWRDNPNLRWGNDNQKPTQAISSSLNQASWL---------GKV

Query:  SFWAN---------------------RGGPNHANMSTFSLRSGKILDT
        SF                            N+AN+S  SLRSGKILDT
Subjt:  SFWAN---------------------RGGPNHANMSTFSLRSGKILDT

KAA0050529.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.4e-3557.43Show/hide
Query:  MLNITTLLTFFVQGGPLKVTKCGVCGLVGHPNDNCSELIEDVNAIRKYDPHSNTYNLRWRDNPNLRWGNDNQKPTQAISSSLNQASWLGKV---------
        M N+TTLLT FVQG PLKVTKCGVC LVGHPND C E+IEDVN +RKYDPH NTYNL WRDNPNLRWGNDNQK TQA  +S NQ + L  +         
Subjt:  MLNITTLLTFFVQGGPLKVTKCGVCGLVGHPNDNCSELIEDVNAIRKYDPHSNTYNLRWRDNPNLRWGNDNQKPTQAISSSLNQASWLGKV---------

Query:  SFWANR---------------------GGPNHANMSTFSLRSGKILDT
        SF                           P+HAN+S  SLRSGKILDT
Subjt:  SFWANR---------------------GGPNHANMSTFSLRSGKILDT

KAA0056048.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.1e-3556.76Show/hide
Query:  MLNITTLLTFFVQGGPLKVTKCGVCGLVGHPNDNCSELIEDVNAIRKYDPHSNTYNLRWRDNPNLRWGNDNQKPTQAISSSLNQ---------ASWLGKV
        MLN+TTLLT FVQG PLKVTKCGVCGLVGHPND C E+IEDVN +R+YDPH NT N  WRDNPN RWGNDNQK TQ   +S NQ         A  +  +
Subjt:  MLNITTLLTFFVQGGPLKVTKCGVCGLVGHPNDNCSELIEDVNAIRKYDPHSNTYNLRWRDNPNLRWGNDNQKPTQAISSSLNQ---------ASWLGKV

Query:  SFWANR---------------------GGPNHANMSTFSLRSGKILDT
        SF                           PNHAN+ST SLRSGKILDT
Subjt:  SFWANR---------------------GGPNHANMSTFSLRSGKILDT

KAA0062012.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.4e-3557.43Show/hide
Query:  MLNITTLLTFFVQGGPLKVTKCGVCGLVGHPNDNCSELIEDVNAIRKYDPHSNTYNLRWRDNPNLRWGNDNQKPTQAISSSLNQASWL---------GKV
        MLN+TTLLT FVQG PLKVTKCGVCGLVGHPND C E+IEDVN +R+YDPH NTYN RWRDNPNLRWGNDNQK TQA S+S NQ + L           +
Subjt:  MLNITTLLTFFVQGGPLKVTKCGVCGLVGHPNDNCSELIEDVNAIRKYDPHSNTYNLRWRDNPNLRWGNDNQKPTQAISSSLNQASWL---------GKV

Query:  SFWANR---------------------GGPNHANMSTFSLRSGKILDT
        SF                           P H N+S   LRSGKILDT
Subjt:  SFWANR---------------------GGPNHANMSTFSLRSGKILDT

TrEMBL top hitse value%identityAlignment
A0A5A7SQH8 Retrotransposon gag protein2.6e-3555.78Show/hide
Query:  MLNITTLLTFFVQGGPLKVTKCGVCGLVGHPNDNCSELIEDVNAIRKYDPHSNTYNLRWRDNPNLRWGNDNQKPTQAISSSLNQASWLGKVSFWANR---
        MLN+TTLLT FVQG PLKVTKCGVCGLVG+PND C ++IEDVN +R+YDPH NTYNL WRDNPNLRWGNDNQK TQA  +S NQ + L  +   A     
Subjt:  MLNITTLLTFFVQGGPLKVTKCGVCGLVGHPNDNCSELIEDVNAIRKYDPHSNTYNLRWRDNPNLRWGNDNQKPTQAISSSLNQASWLGKVSFWANR---

Query:  --------------------------GGPNHANMSTFSLRSGKILDT
                                    P+H N+S  SLRSGKILDT
Subjt:  --------------------------GGPNHANMSTFSLRSGKILDT

A0A5A7UAL2 Retrotransposon gag protein2.6e-3557.43Show/hide
Query:  MLNITTLLTFFVQGGPLKVTKCGVCGLVGHPNDNCSELIEDVNAIRKYDPHSNTYNLRWRDNPNLRWGNDNQKPTQAISSSLNQASWLGKV---------
        M N+TTLLT FVQG PLKVTKCGVC LVGHPND C E+IEDVN +RKYDPH NTYNL WRDNPNLRWGNDNQK TQA  +S NQ + L  +         
Subjt:  MLNITTLLTFFVQGGPLKVTKCGVCGLVGHPNDNCSELIEDVNAIRKYDPHSNTYNLRWRDNPNLRWGNDNQKPTQAISSSLNQASWLGKV---------

Query:  SFWANR---------------------GGPNHANMSTFSLRSGKILDT
        SF                           P+HAN+S  SLRSGKILDT
Subjt:  SFWANR---------------------GGPNHANMSTFSLRSGKILDT

A0A5A7ULU1 Retrotransposon gag protein4.4e-3556.76Show/hide
Query:  MLNITTLLTFFVQGGPLKVTKCGVCGLVGHPNDNCSELIEDVNAIRKYDPHSNTYNLRWRDNPNLRWGNDNQKPTQAISSSLNQ---------ASWLGKV
        MLN+TTLLT FVQG PLKVTKCGVCGLVGHPND C E+IEDVN +R+YDPH NT N  WRDNPN RWGNDNQK TQ   +S NQ         A  +  +
Subjt:  MLNITTLLTFFVQGGPLKVTKCGVCGLVGHPNDNCSELIEDVNAIRKYDPHSNTYNLRWRDNPNLRWGNDNQKPTQAISSSLNQ---------ASWLGKV

Query:  SFWANR---------------------GGPNHANMSTFSLRSGKILDT
        SF                           PNHAN+ST SLRSGKILDT
Subjt:  SFWANR---------------------GGPNHANMSTFSLRSGKILDT

A0A5A7V1C6 Retrotransposon gag protein1.2e-3557.43Show/hide
Query:  MLNITTLLTFFVQGGPLKVTKCGVCGLVGHPNDNCSELIEDVNAIRKYDPHSNTYNLRWRDNPNLRWGNDNQKPTQAISSSLNQASWL---------GKV
        MLN+TTLLT FVQG PLKVTKCGVCGLVGHPND C E+IEDVN +R+YDPH NTYN RWRDNPNLRWGNDNQK TQA S+S NQ + L           +
Subjt:  MLNITTLLTFFVQGGPLKVTKCGVCGLVGHPNDNCSELIEDVNAIRKYDPHSNTYNLRWRDNPNLRWGNDNQKPTQAISSSLNQASWL---------GKV

Query:  SFWANR---------------------GGPNHANMSTFSLRSGKILDT
        SF                           P H N+S   LRSGKILDT
Subjt:  SFWANR---------------------GGPNHANMSTFSLRSGKILDT

A0A5D3CRR8 Retrotransposon gag protein1.5e-3558.11Show/hide
Query:  MLNITTLLTFFVQGGPLKVTKCGVCGLVGHPNDNCSELIEDVNAIRKYDPHSNTYNLRWRDNPNLRWGNDNQKPTQAISSSLNQASWL---------GKV
        MLN+TTLLT FVQG PLKVTKCGVCGLVGHPND C E+IEDVN +RKYDPH NTYN  WRDNPNLRWGNDNQK TQA S+S NQ + L           +
Subjt:  MLNITTLLTFFVQGGPLKVTKCGVCGLVGHPNDNCSELIEDVNAIRKYDPHSNTYNLRWRDNPNLRWGNDNQKPTQAISSSLNQASWL---------GKV

Query:  SFWAN---------------------RGGPNHANMSTFSLRSGKILDT
        SF                            N+AN+S  SLRSGKILDT
Subjt:  SFWAN---------------------RGGPNHANMSTFSLRSGKILDT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAAATATAACAACTCTTCTTACTTTTTTTGTGCAAGGTGGTCCTCTCAAAGTAACCAAATGTGGAGTTTGTGGCTTGGTTGGTCATCCAAATGACAACTGTTCCGA
GTTAATCGAGGATGTGAATGCTATTAGAAAGTATGACCCCCACAGTAATACATACAATTTGAGATGGAGAGACAACCCAAACTTGAGATGGGGGAATGACAACCAAAAGC
CCACACAAGCAATATCCTCCTCTTTGAACCAAGCAAGTTGGTTGGGAAAGGTAAGCTTCTGGGCGAACCGGGGCGGACCGAACCATGCCAACATGAGTACCTTCTCACTA
AGGAGTGGTAAGATTCTTGACACAGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTAAATATAACAACTCTTCTTACTTTTTTTGTGCAAGGTGGTCCTCTCAAAGTAACCAAATGTGGAGTTTGTGGCTTGGTTGGTCATCCAAATGACAACTGTTCCGA
GTTAATCGAGGATGTGAATGCTATTAGAAAGTATGACCCCCACAGTAATACATACAATTTGAGATGGAGAGACAACCCAAACTTGAGATGGGGGAATGACAACCAAAAGC
CCACACAAGCAATATCCTCCTCTTTGAACCAAGCAAGTTGGTTGGGAAAGGTAAGCTTCTGGGCGAACCGGGGCGGACCGAACCATGCCAACATGAGTACCTTCTCACTA
AGGAGTGGTAAGATTCTTGACACAGACTAG
Protein sequenceShow/hide protein sequence
MLNITTLLTFFVQGGPLKVTKCGVCGLVGHPNDNCSELIEDVNAIRKYDPHSNTYNLRWRDNPNLRWGNDNQKPTQAISSSLNQASWLGKVSFWANRGGPNHANMSTFSL
RSGKILDTD