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PI0002177 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002177
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr02:14796987..14799022
RNA-Seq ExpressionPI0002177
SyntenyPI0002177
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051864.1 retrotransposon protein [Cucumis melo var. makuwa]7.2e-1837.04Show/hide
Query:  GKFVEDPETYMDQRRRVHPHGMSGGIGLHRGMEIGQSHILT--RLLGNNSENDDGKA-----------PRSHPTTKGHLNKPFLYYDELSYVFKKDHAMG
        GKF + P+  +D+R   +P  +S G+GL + +E+ Q  + T      +   ND+ K             +SH   KG LN  F +YDELSY+F +D  M 
Subjt:  GKFVEDPETYMDQRRRVHPHGMSGGIGLHRGMEIGQSHILT--RLLGNNSENDDGKA-----------PRSHPTTKGHLNKPFLYYDELSYVFKKDHAMG

Query:  QRAKTFANVGSNVPGSFEPFPSKDGRNMDISYMYSQGRPMSPEDIVGSRPER-----SSECK
         R +TFANVGSNVP  +  FP+ DG +M+I  M+ QG  M P+ I+G+  ++     +S CK
Subjt:  QRAKTFANVGSNVPGSFEPFPSKDGRNMDISYMYSQGRPMSPEDIVGSRPER-----SSECK

KAA0052326.1 hypothetical protein E6C27_scaffold207G001630 [Cucumis melo var. makuwa]1.6e-1749.02Show/hide
Query:  GNNSENDDGKAPRSHPTTKGHLNKPFLYYDELSYVFKKDHAMGQRAKTFANVGSNVPGSFEPFPSKDGRNMDISYMYSQGRPMSPEDIVGSRPERSSECK
        G+ +        ++HP T G LNK F  YDELSY F KD+A+G  A+TFA+V SNV   +E FP +DG +M+I  MYS G  MSP+DI+ ++P RSS+C 
Subjt:  GNNSENDDGKAPRSHPTTKGHLNKPFLYYDELSYVFKKDHAMGQRAKTFANVGSNVPGSFEPFPSKDGRNMDISYMYSQGRPMSPEDIVGSRPERSSECK

Query:  TG
         G
Subjt:  TG

KAA0054520.1 RING-H2 finger protein ATL66 [Cucumis melo var. makuwa]5.5e-1855.81Show/hide
Query:  RSHPTTKGHLNKPFLYYDELSYVFKKDHAMGQRAKTFANVGSNVPGSFEPFPSKDGRNMDISYMYSQGRPMSPEDIVGSRPERSSE
        +SH  TKG LNK F YY++LSY+F+KD  MG   +TF +VGSNV G +E F ++DG NM I  MYSQG  M P+DI+G++P  SSE
Subjt:  RSHPTTKGHLNKPFLYYDELSYVFKKDHAMGQRAKTFANVGSNVPGSFEPFPSKDGRNMDISYMYSQGRPMSPEDIVGSRPERSSE

KAA0059933.1 retrotransposon protein [Cucumis melo var. makuwa]1.2e-1756.38Show/hide
Query:  KAPRSHPTTKGHLNKPFLYYDELSYVFKKDHAMGQRAKTFANVGSNVPGSFEPFPSKDGRNMDISYMYSQGRPMSPEDIVGSRPERSSECKTGS
        +A  SHP TK  LNKPFLYYDEL+YVF  D A GQ A+TF +VGSN PG +E F   DG N +   +YSQG  MS +D+  SRP  +SE +TGS
Subjt:  KAPRSHPTTKGHLNKPFLYYDELSYVFKKDHAMGQRAKTFANVGSNVPGSFEPFPSKDGRNMDISYMYSQGRPMSPEDIVGSRPERSSECKTGS

KAA0060332.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-1858.24Show/hide
Query:  RSHPTTKGHLNKPFLYYDELSYVFKKDHAMGQRAKTFANVGSNVPGSFEPFPSKDGRNMDISYMYSQGRPMSPEDIVGSRPERSSECKTGS
        RSHP  K  LNKPF YYDEL+YVF +D AMG  AKTFA+VGSN PG +E F   DG N +   +YSQG  MS +D+  SRP R+S+ +TGS
Subjt:  RSHPTTKGHLNKPFLYYDELSYVFKKDHAMGQRAKTFANVGSNVPGSFEPFPSKDGRNMDISYMYSQGRPMSPEDIVGSRPERSSECKTGS

TrEMBL top hitse value%identityAlignment
A0A5A7U941 Retrotransposon protein3.5e-1837.04Show/hide
Query:  GKFVEDPETYMDQRRRVHPHGMSGGIGLHRGMEIGQSHILT--RLLGNNSENDDGKA-----------PRSHPTTKGHLNKPFLYYDELSYVFKKDHAMG
        GKF + P+  +D+R   +P  +S G+GL + +E+ Q  + T      +   ND+ K             +SH   KG LN  F +YDELSY+F +D  M 
Subjt:  GKFVEDPETYMDQRRRVHPHGMSGGIGLHRGMEIGQSHILT--RLLGNNSENDDGKA-----------PRSHPTTKGHLNKPFLYYDELSYVFKKDHAMG

Query:  QRAKTFANVGSNVPGSFEPFPSKDGRNMDISYMYSQGRPMSPEDIVGSRPER-----SSECK
         R +TFANVGSNVP  +  FP+ DG +M+I  M+ QG  M P+ I+G+  ++     +S CK
Subjt:  QRAKTFANVGSNVPGSFEPFPSKDGRNMDISYMYSQGRPMSPEDIVGSRPER-----SSECK

A0A5A7UDR2 DUF659 domain-containing protein7.8e-1849.02Show/hide
Query:  GNNSENDDGKAPRSHPTTKGHLNKPFLYYDELSYVFKKDHAMGQRAKTFANVGSNVPGSFEPFPSKDGRNMDISYMYSQGRPMSPEDIVGSRPERSSECK
        G+ +        ++HP T G LNK F  YDELSY F KD+A+G  A+TFA+V SNV   +E FP +DG +M+I  MYS G  MSP+DI+ ++P RSS+C 
Subjt:  GNNSENDDGKAPRSHPTTKGHLNKPFLYYDELSYVFKKDHAMGQRAKTFANVGSNVPGSFEPFPSKDGRNMDISYMYSQGRPMSPEDIVGSRPERSSECK

Query:  TG
         G
Subjt:  TG

A0A5A7UGY0 RING-H2 finger protein ATL662.7e-1855.81Show/hide
Query:  RSHPTTKGHLNKPFLYYDELSYVFKKDHAMGQRAKTFANVGSNVPGSFEPFPSKDGRNMDISYMYSQGRPMSPEDIVGSRPERSSE
        +SH  TKG LNK F YY++LSY+F+KD  MG   +TF +VGSNV G +E F ++DG NM I  MYSQG  M P+DI+G++P  SSE
Subjt:  RSHPTTKGHLNKPFLYYDELSYVFKKDHAMGQRAKTFANVGSNVPGSFEPFPSKDGRNMDISYMYSQGRPMSPEDIVGSRPERSSE

A0A5A7UVE5 Retrotransposon protein6.0e-1856.38Show/hide
Query:  KAPRSHPTTKGHLNKPFLYYDELSYVFKKDHAMGQRAKTFANVGSNVPGSFEPFPSKDGRNMDISYMYSQGRPMSPEDIVGSRPERSSECKTGS
        +A  SHP TK  LNKPFLYYDEL+YVF  D A GQ A+TF +VGSN PG +E F   DG N +   +YSQG  MS +D+  SRP  +SE +TGS
Subjt:  KAPRSHPTTKGHLNKPFLYYDELSYVFKKDHAMGQRAKTFANVGSNVPGSFEPFPSKDGRNMDISYMYSQGRPMSPEDIVGSRPERSSECKTGS

A0A5A7UWV7 Retrotransposon protein1.2e-1858.24Show/hide
Query:  RSHPTTKGHLNKPFLYYDELSYVFKKDHAMGQRAKTFANVGSNVPGSFEPFPSKDGRNMDISYMYSQGRPMSPEDIVGSRPERSSECKTGS
        RSHP  K  LNKPF YYDEL+YVF +D AMG  AKTFA+VGSN PG +E F   DG N +   +YSQG  MS +D+  SRP R+S+ +TGS
Subjt:  RSHPTTKGHLNKPFLYYDELSYVFKKDHAMGQRAKTFANVGSNVPGSFEPFPSKDGRNMDISYMYSQGRPMSPEDIVGSRPERSSECKTGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATTTGCTTTGGACAATCGCTTGATTAGCTTCGACCGAAGTCGTCGATGTCAAGGAGATGGTGGTCATGTTCCTACACGTCTTGGCGCACAATGTGAAGAACTGAG
TGGTCCAGAGGGAAATGGCAAGTTCGTCGAGGACCCCGAAACATACATGGACCAGAGAAGAAGAGTCCACCCTCATGGAATGTCTGGTGGAATTGGTCTCCACCGAGGGA
TGGAAATTGGACAATCGCACATTCTGACCCGGTTACTTGGCAATAATTCTGAGAATGATGACGGAAAAGCTCCCAGGAGTCATCCGACAACAAAGGGTCATTTGAACAAG
CCATTTCTATACTACGACGAACTGTCCTATGTCTTTAAGAAAGATCACGCTATGGGACAACGCGCTAAGACATTCGCAAATGTCGGTTCGAATGTGCCAGGCAGTTTCGA
GCCATTTCCAAGTAAAGATGGACGCAATATGGACATCTCATACATGTACAGCCAGGGACGTCCAATGTCACCCGAGGACATAGTGGGATCACGACCTGAACGGTCGAGTG
AGTGCAAGACGGGTTCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCATTTGCTTTGGACAATCGCTTGATTAGCTTCGACCGAAGTCGTCGATGTCAAGGAGATGGTGGTCATGTTCCTACACGTCTTGGCGCACAATGTGAAGAACTGAG
TGGTCCAGAGGGAAATGGCAAGTTCGTCGAGGACCCCGAAACATACATGGACCAGAGAAGAAGAGTCCACCCTCATGGAATGTCTGGTGGAATTGGTCTCCACCGAGGGA
TGGAAATTGGACAATCGCACATTCTGACCCGGTTACTTGGCAATAATTCTGAGAATGATGACGGAAAAGCTCCCAGGAGTCATCCGACAACAAAGGGTCATTTGAACAAG
CCATTTCTATACTACGACGAACTGTCCTATGTCTTTAAGAAAGATCACGCTATGGGACAACGCGCTAAGACATTCGCAAATGTCGGTTCGAATGTGCCAGGCAGTTTCGA
GCCATTTCCAAGTAAAGATGGACGCAATATGGACATCTCATACATGTACAGCCAGGGACGTCCAATGTCACCCGAGGACATAGTGGGATCACGACCTGAACGGTCGAGTG
AGTGCAAGACGGGTTCGTAG
Protein sequenceShow/hide protein sequence
MPFALDNRLISFDRSRRCQGDGGHVPTRLGAQCEELSGPEGNGKFVEDPETYMDQRRRVHPHGMSGGIGLHRGMEIGQSHILTRLLGNNSENDDGKAPRSHPTTKGHLNK
PFLYYDELSYVFKKDHAMGQRAKTFANVGSNVPGSFEPFPSKDGRNMDISYMYSQGRPMSPEDIVGSRPERSSECKTGS