CuGenDBv2

Gene ID	PI0002223
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Classical arabinogalactan protein 1-like
Genome location	chr07:10185516..10186263
RNA-Seq Expression	PI0002223
Synteny	PI0002223
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR044959 - Classical arabinogalactan protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0061155.1 classical arabinogalactan protein 1-like [Cucumis melo var. makuwa]

1.7e-34

88.19

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Query:  MAIRSLVAMILVSFLIASAFAQSPAASPSLSPSKSPSKAPSSSPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSSSPSPASSPSSISSPPADAPAP
        MAIRSLVAMILVSFLIASAFAQ        SP++SPSKAPS SPSVKSPKSSPA APTPSSLKSPPSPPSTSPSTSPSSSPSPA+SPSSISSPPADAPAP
Subjt:  MAIRSLVAMILVSFLIASAFAQSPAASPSLSPSKSPSKAPSSSPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASITFSVFGSVAVALYAVVLMI
        SGNGAASITFSV GS AVALYAVVLMI
Subjt:  SGNGAASITFSVFGSVAVALYAVVLMI

KGN53727.1 hypothetical protein Csa_015026 [Cucumis sativus]

9.1e-33

85.83

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Query:  MAIRSLVAMILVSFLIASAFAQSPAASPSLSPSKSPSKAPSSSPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSSSPSPASSPSSISSPPADAPAP
        MAI SLVA+I VSF IASAFAQSPAASPSLSP+KSPSKAPS +    SPKSSPA APTPSSLKSPPSPPS+SPST    SPSPASSP+SISSPPADAPAP
Subjt:  MAIRSLVAMILVSFLIASAFAQSPAASPSLSPSKSPSKAPSSSPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASITFSVFGSVAVALYAVVLMI
        SGNGAASITFSVFGSVAVALYAVVLMI
Subjt:  SGNGAASITFSVFGSVAVALYAVVLMI

XP_022942993.1 classical arabinogalactan protein 1-like [Cucurbita moschata]

1.4e-28

76.38

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Query:  MAIRSLVAMILVSFLIASAFAQSPAASPSLSPSKSPSKAPSSSPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSSSPSPASSPSSISSPPADAPAP
        MAIR  V M+ V+ LI SA AQSP+ASPSLSP+KSPSKAPS SPSV+SPKSSPAAAPTP+SLKSPPSPP+ SPS SPS       SPSSISSPPADAPAP
Subjt:  MAIRSLVAMILVSFLIASAFAQSPAASPSLSPSKSPSKAPSSSPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASITFSVFGSVAVALYAVVLMI
        SGN AASI+FS+FGSVA  LYA+VLMI
Subjt:  SGNGAASITFSVFGSVAVALYAVVLMI

XP_023542663.1 classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo]

1.0e-28

76.38

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Query:  MAIRSLVAMILVSFLIASAFAQSPAASPSLSPSKSPSKAPSSSPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSSSPSPASSPSSISSPPADAPAP
        MAIR  V M++V+ LI SA AQSP+ASPSLSP+KSPSKAPS SPSV+SPKSSPAAAPTP+SL+SPPSPP+ SPS SPS SP    SPSSISSPPADAPAP
Subjt:  MAIRSLVAMILVSFLIASAFAQSPAASPSLSPSKSPSKAPSSSPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASITFSVFGSVAVALYAVVLMI
        SGN AASI+ S+FGSVA  LYA+VLMI
Subjt:  SGNGAASITFSVFGSVAVALYAVVLMI

XP_038877310.1 classical arabinogalactan protein 1 [Benincasa hispida]

9.1e-33

85.04

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Query:  MAIRSLVAMILVSFLIASAFAQSPAASPSLSPSKSPSKAPSSSPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSSSPSPASSPSSISSPPADAPAP
        MAIRS VAMILV+ LI SA AQSP ASP  SPSKSPSKAPS+SPSVKSPKSSPAAAPTPSSLKSPPSPPSTSP+TSPS   SPA+SPS ISSPPADAPAP
Subjt:  MAIRSLVAMILVSFLIASAFAQSPAASPSLSPSKSPSKAPSSSPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASITFSVFGSVAVALYAVVLMI
        SGNGAASI+FSVFGSVAV LY VVL+I
Subjt:  SGNGAASITFSVFGSVAVALYAVVLMI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KZB8 Uncharacterized protein

4.4e-33

85.83

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Query:  MAIRSLVAMILVSFLIASAFAQSPAASPSLSPSKSPSKAPSSSPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSSSPSPASSPSSISSPPADAPAP
        MAI SLVA+I VSF IASAFAQSPAASPSLSP+KSPSKAPS +    SPKSSPA APTPSSLKSPPSPPS+SPST    SPSPASSP+SISSPPADAPAP
Subjt:  MAIRSLVAMILVSFLIASAFAQSPAASPSLSPSKSPSKAPSSSPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASITFSVFGSVAVALYAVVLMI
        SGNGAASITFSVFGSVAVALYAVVLMI
Subjt:  SGNGAASITFSVFGSVAVALYAVVLMI

A0A5A7V5Q9 Classical arabinogalactan protein 1-like

8.1e-35

88.19

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Query:  MAIRSLVAMILVSFLIASAFAQSPAASPSLSPSKSPSKAPSSSPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSSSPSPASSPSSISSPPADAPAP
        MAIRSLVAMILVSFLIASAFAQ        SP++SPSKAPS SPSVKSPKSSPA APTPSSLKSPPSPPSTSPSTSPSSSPSPA+SPSSISSPPADAPAP
Subjt:  MAIRSLVAMILVSFLIASAFAQSPAASPSLSPSKSPSKAPSSSPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASITFSVFGSVAVALYAVVLMI
        SGNGAASITFSV GS AVALYAVVLMI
Subjt:  SGNGAASITFSVFGSVAVALYAVVLMI

A0A6J1E9Q3 classical arabinogalactan protein 1-like

4.7e-27

77.17

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Query:  MAIRSLVAMILVSFLIASAFAQSPAASPSLSPSKSPSKAPSSSPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSSSPSPASSPSSISSPPADAPAP
        MAIRS V MILV+ LI SA AQSPAASPSLSP KSPSKAPS+SPSVKSPKSSP AAPTP+S              SPS+SPSPA+SPSSISSPPADAPAP
Subjt:  MAIRSLVAMILVSFLIASAFAQSPAASPSLSPSKSPSKAPSSSPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASITFSVFGSVAVALYAVVLMI
        SG+GAASI+FSVFGSVAV LYAVVLMI
Subjt:  SGNGAASITFSVFGSVAVALYAVVLMI

A0A6J1FW49 classical arabinogalactan protein 1-like

6.6e-29

76.38

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Query:  MAIRSLVAMILVSFLIASAFAQSPAASPSLSPSKSPSKAPSSSPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSSSPSPASSPSSISSPPADAPAP
        MAIR  V M+ V+ LI SA AQSP+ASPSLSP+KSPSKAPS SPSV+SPKSSPAAAPTP+SLKSPPSPP+ SPS SPS       SPSSISSPPADAPAP
Subjt:  MAIRSLVAMILVSFLIASAFAQSPAASPSLSPSKSPSKAPSSSPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASITFSVFGSVAVALYAVVLMI
        SGN AASI+FS+FGSVA  LYA+VLMI
Subjt:  SGNGAASITFSVFGSVAVALYAVVLMI

A0A6J1J6X2 classical arabinogalactan protein 1-like

6.2e-27

77.17

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Query:  MAIRSLVAMILVSFLIASAFAQSPAASPSLSPSKSPSKAPSSSPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSSSPSPASSPSSISSPPADAPAP
        MAIRS V MILV+ LI SA AQSPAASPSLSP KSPSKAP +SPSVKSPKSSP AAPTP+S              SPS+SPSPA+SPSSISSPPADAPAP
Subjt:  MAIRSLVAMILVSFLIASAFAQSPAASPSLSPSKSPSKAPSSSPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASITFSVFGSVAVALYAVVLMI
        SGNGAASI+FSVFGSVAV LYAVVLMI
Subjt:  SGNGAASITFSVFGSVAVALYAVVLMI

SwissProt top hits

e value

%identity

Alignment

Q8LCN5 Classical arabinogalactan protein 1

2.1e-08

51.52

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Query:  RSLVAMILVSFLIASAFAQSPAASPS------LSPSKSPSK--APSSSPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSSSPSPASSPSSISSPPA
        +SLV ++L + LI+SA AQSPA +PS      +SP+ SP K  AP+ +P V SP  SPAAA TP S  SPPSPP     T    + SPA SPS+IS  P 
Subjt:  RSLVAMILVSFLIASAFAQSPAASPS------LSPSKSPSK--APSSSPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSSSPSPASSPSSISSPPA

Query:  DAPAPSGNGAASITFSVFGSVAVALYAVVLMI
        +AP P+  GA S  F+ FGSVAV L A VL+I
Subjt:  DAPAPSGNGAASITFSVFGSVAVALYAVVLMI

Arabidopsis top hits

e value

%identity

Alignment

AT5G64310.1 arabinogalactan protein 1

1.5e-09

51.52

Show/hide

Query:  RSLVAMILVSFLIASAFAQSPAASPS------LSPSKSPSK--APSSSPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSSSPSPASSPSSISSPPA
        +SLV ++L + LI+SA AQSPA +PS      +SP+ SP K  AP+ +P V SP  SPAAA TP S  SPPSPP     T    + SPA SPS+IS  P 
Subjt:  RSLVAMILVSFLIASAFAQSPAASPS------LSPSKSPSK--APSSSPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSSSPSPASSPSSISSPPA

Query:  DAPAPSGNGAASITFSVFGSVAVALYAVVLMI
        +AP P+  GA S  F+ FGSVAV L A VL+I
Subjt:  DAPAPSGNGAASITFSVFGSVAVALYAVVLMI

Sequences

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CDS sequence

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ATGGCGATTAGAAGTCTTGTTGCAATGATTTTAGTGTCATTCTTGATCGCCTCTGCTTTTGCTCAATCGCCCGCTGCATCTCCCTCATTGTCTCCAAGCAAATCACCTTC
CAAGGCTCCATCCTCGTCTCCGTCTGTTAAGTCACCGAAATCCTCTCCGGCGGCCGCCCCTACTCCCTCCTCCTTGAAGTCTCCACCATCTCCTCCTTCTACTTCTCCGT
CTACTTCGCCGTCTAGTTCTCCGTCTCCGGCCAGTTCTCCTTCCTCGATCTCCTCACCGCCTGCTGACGCTCCCGCTCCGTCAGGTAACGGCGCTGCCTCGATCACTTTT
TCGGTGTTCGGATCTGTTGCCGTTGCGCTATACGCCGTCGTTTTGATGATCTGA

mRNA sequence

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CACAACTCCTTCTCTCTCTCCAATTTCTCTTCTCTTTACATTCATCTTTTCCTTTCTCTTCTTTTAATCTTTCCATTTCATTTCATTTACACATATGGCGATTAGAAGTC
TTGTTGCAATGATTTTAGTGTCATTCTTGATCGCCTCTGCTTTTGCTCAATCGCCCGCTGCATCTCCCTCATTGTCTCCAAGCAAATCACCTTCCAAGGCTCCATCCTCG
TCTCCGTCTGTTAAGTCACCGAAATCCTCTCCGGCGGCCGCCCCTACTCCCTCCTCCTTGAAGTCTCCACCATCTCCTCCTTCTACTTCTCCGTCTACTTCGCCGTCTAG
TTCTCCGTCTCCGGCCAGTTCTCCTTCCTCGATCTCCTCACCGCCTGCTGACGCTCCCGCTCCGTCAGGTAACGGCGCTGCCTCGATCACTTTTTCGGTGTTCGGATCTG
TTGCCGTTGCGCTATACGCCGTCGTTTTGATGATCTGAGAGGCAGTCGGATTCGATTCGTTCTCTTTGTCTCTCTATTTGAGTGATTTATTGTAGCATTTTACTGAGTAC
ATTTTATCTTGATTTTGTATTTTTTTTTTTTTTTCTTTTACTTTTTCACAGTTATTATTATATATTATTCTTCACTATCTAATTTAATTTGTTTTATTGGTTTCTAGTTA
TGGCGATAATGTGCTTTTGTTGTTAACGGAGCTTTTCTGTATCTACTCTTCTTATGTATTAATTTATAATCACCTCTTTCAATTTCTC

Protein sequence

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MAIRSLVAMILVSFLIASAFAQSPAASPSLSPSKSPSKAPSSSPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSSSPSPASSPSSISSPPADAPAPSGNGAASITF
SVFGSVAVALYAVVLMI

PI0002223 (gene) of Melon (PI 482460) v1 genome