; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0002265 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002265
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr11:12764100..12766259
RNA-Seq ExpressionPI0002265
SyntenyPI0002265
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035943.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.7e-3260Show/hide
Query:  KMERKINLLMKVIKERDHEIAALREQMQTRELLSRVNLLLSKLDEVPEIIACHAINVIEEENISLRSLEEERVSKDLSMFNVDDLLSLPQETKSILIDVL
        K ++K    +K + E D +    +  +   +       L    DE P ++ACHAIN  EEE+I LRSLEEE VSKDLS FNVDDLLSLPQETK+ILI+ L
Subjt:  KMERKINLLMKVIKERDHEIAALREQMQTRELLSRVNLLLSKLDEVPEIIACHAINVIEEENISLRSLEEERVSKDLSMFNVDDLLSLPQETKSILIDVL

Query:  LNSRASSLSAPTSTTHESASYCMSIGFSNEDLLLGSKLHNRPLYV
        LNS ASSLSAPT+ T+ES  YCMSI FS+EDLLLGSKLHNRPLYV
Subjt:  LNSRASSLSAPTSTTHESASYCMSIGFSNEDLLLGSKLHNRPLYV

KAA0042173.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.7e-3266.15Show/hide
Query:  NLLLSKLDEVPEIIACHAINVIEEENISLRSLEEERVSKDLSMFNVDDLLSLPQETKSILIDVLLNSRASSLSAPTSTTHESASYCMSIGFSNEDLLLGS
        + L    DE  +++ACH IN  E+E I  RSLE+E VSKDLS FNVDDLLSLPQETK ILID LLNS ASS SAPT+ T+ESA YCMSI FS+E LLLG 
Subjt:  NLLLSKLDEVPEIIACHAINVIEEENISLRSLEEERVSKDLSMFNVDDLLSLPQETKSILIDVLLNSRASSLSAPTSTTHESASYCMSIGFSNEDLLLGS

Query:  KLHNRPLYVKDTFEYRELTRFSSVMDQLST
        KLHNRPLYV      RE T F S+MDQL T
Subjt:  KLHNRPLYVKDTFEYRELTRFSSVMDQLST

KAA0054831.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.4e-3369.42Show/hide
Query:  VPEIIACHAINVIEEENISLRSLEEERVSKDLSMFNVDDLLSLPQETKSILIDVLLNSRASSLSAPTSTTHESASYCMSIGFSNEDLLLGSKLHNRPLYV
        + E++ACHAIN +EEE+I  RSLEEE VSK LS FNVDDLLSLPQETK+ILI+ LLNS ASSLSAPT+ T+E+   CMSI FSNEDLLLGSKL+NRPLYV
Subjt:  VPEIIACHAINVIEEENISLRSLEEERVSKDLSMFNVDDLLSLPQETKSILIDVLLNSRASSLSAPTSTTHESASYCMSIGFSNEDLLLGSKLHNRPLYV

Query:  KDTFEYRELTRFSSVMDQLST
            + + + R SS+MDQLST
Subjt:  KDTFEYRELTRFSSVMDQLST

KAA0054831.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.5e-0771.74Show/hide
Query:  MSIMMADVTGVTAMTKMERKINLLMKVIKERDHEIAALREQMQTRE
        MSIMMA++T   AM KMERK+N LMKV+KE+DHEI ALREQM+T E
Subjt:  MSIMMADVTGVTAMTKMERKINLLMKVIKERDHEIAALREQMQTRE

KAA0054831.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.6e-3232.11Show/hide
Query:  MKSPKARIVIKENHLYDNSNSASSRSKKESHFDVMSIMMADVTGVTAMTKMERKINLLMKVIKERDHEIAALREQMQTREL-------------------
        M+SPK  IV+KEN LYDNS+SAS +SKKE+H +VMS+MMAD+T   AM +M+RK+N L K+++ERDHEI ALREQ++TRE                    
Subjt:  MKSPKARIVIKENHLYDNSNSASSRSKKESHFDVMSIMMADVTGVTAMTKMERKINLLMKVIKERDHEIAALREQMQTREL-------------------

Query:  ---------LSRVNLLLSKL--------------------------------------------------------------------------------
                 +S  +LL+ +L                                                                                
Subjt:  ---------LSRVNLLLSKL--------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------DEVPEIIACHAINVIEEENISLRSLEEERVSKDLSMFNVDDLLSLPQETKSILIDVLLNSRASSLSAPTSTTHESASYCMSIGFSNEDLLLGSK
              DE   ++ACHAIN  EEE+I LRSLEEE VSKDLS FNVDDLLS PQETK+IL++ LLN  AS+ S PT+ T+ES SYCMSI FS EDLLLGSK
Subjt:  ------DEVPEIIACHAINVIEEENISLRSLEEERVSKDLSMFNVDDLLSLPQETKSILIDVLLNSRASSLSAPTSTTHESASYCMSIGFSNEDLLLGSK

Query:  LHNRPLYV
        LHNRPLYV
Subjt:  LHNRPLYV

KAA0056780.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.0e-3160.4Show/hide
Query:  TAMTKMERKINLLMKVIKERDHEIAALREQMQTRELLSRVNLLLSKLDEVPEIIACHAINVIEEENISLRSLEEERVSKDLSMFNVDDLLSLPQETKSIL
        T   K ++K   L K+I E D +     +++ T         L    DE PE++ACHAI+ IEEE+I LRSLEEE VSKDL  FNVDDLLSLPQETK+IL
Subjt:  TAMTKMERKINLLMKVIKERDHEIAALREQMQTRELLSRVNLLLSKLDEVPEIIACHAINVIEEENISLRSLEEERVSKDLSMFNVDDLLSLPQETKSIL

Query:  IDVLLNSRASSLSAPTSTTHESASYCMSIGFSNEDLLLGSKLHNRPLYV
        I+ LLNS ASS SAPT+ T+ES  YCMSI FS+EDLLLGSKLHNRPLYV
Subjt:  IDVLLNSRASSLSAPTSTTHESASYCMSIGFSNEDLLLGSKLHNRPLYV

TrEMBL top hitse value%identityAlignment
A0A5A7SZ85 Ty3-gypsy retrotransposon protein3.7e-3260Show/hide
Query:  KMERKINLLMKVIKERDHEIAALREQMQTRELLSRVNLLLSKLDEVPEIIACHAINVIEEENISLRSLEEERVSKDLSMFNVDDLLSLPQETKSILIDVL
        K ++K    +K + E D +    +  +   +       L    DE P ++ACHAIN  EEE+I LRSLEEE VSKDLS FNVDDLLSLPQETK+ILI+ L
Subjt:  KMERKINLLMKVIKERDHEIAALREQMQTRELLSRVNLLLSKLDEVPEIIACHAINVIEEENISLRSLEEERVSKDLSMFNVDDLLSLPQETKSILIDVL

Query:  LNSRASSLSAPTSTTHESASYCMSIGFSNEDLLLGSKLHNRPLYV
        LNS ASSLSAPT+ T+ES  YCMSI FS+EDLLLGSKLHNRPLYV
Subjt:  LNSRASSLSAPTSTTHESASYCMSIGFSNEDLLLGSKLHNRPLYV

A0A5A7TG25 Ty3-gypsy retrotransposon protein3.7e-3266.15Show/hide
Query:  NLLLSKLDEVPEIIACHAINVIEEENISLRSLEEERVSKDLSMFNVDDLLSLPQETKSILIDVLLNSRASSLSAPTSTTHESASYCMSIGFSNEDLLLGS
        + L    DE  +++ACH IN  E+E I  RSLE+E VSKDLS FNVDDLLSLPQETK ILID LLNS ASS SAPT+ T+ESA YCMSI FS+E LLLG 
Subjt:  NLLLSKLDEVPEIIACHAINVIEEENISLRSLEEERVSKDLSMFNVDDLLSLPQETKSILIDVLLNSRASSLSAPTSTTHESASYCMSIGFSNEDLLLGS

Query:  KLHNRPLYVKDTFEYRELTRFSSVMDQLST
        KLHNRPLYV      RE T F S+MDQL T
Subjt:  KLHNRPLYVKDTFEYRELTRFSSVMDQLST

A0A5A7UMP5 Ty3-gypsy retrotransposon protein6.8e-3469.42Show/hide
Query:  VPEIIACHAINVIEEENISLRSLEEERVSKDLSMFNVDDLLSLPQETKSILIDVLLNSRASSLSAPTSTTHESASYCMSIGFSNEDLLLGSKLHNRPLYV
        + E++ACHAIN +EEE+I  RSLEEE VSK LS FNVDDLLSLPQETK+ILI+ LLNS ASSLSAPT+ T+E+   CMSI FSNEDLLLGSKL+NRPLYV
Subjt:  VPEIIACHAINVIEEENISLRSLEEERVSKDLSMFNVDDLLSLPQETKSILIDVLLNSRASSLSAPTSTTHESASYCMSIGFSNEDLLLGSKLHNRPLYV

Query:  KDTFEYRELTRFSSVMDQLST
            + + + R SS+MDQLST
Subjt:  KDTFEYRELTRFSSVMDQLST

A0A5A7UMP5 Ty3-gypsy retrotransposon protein3.2e-0771.74Show/hide
Query:  MSIMMADVTGVTAMTKMERKINLLMKVIKERDHEIAALREQMQTRE
        MSIMMA++T   AM KMERK+N LMKV+KE+DHEI ALREQM+T E
Subjt:  MSIMMADVTGVTAMTKMERKINLLMKVIKERDHEIAALREQMQTRE

A0A5A7UMP5 Ty3-gypsy retrotransposon protein1.3e-3232.11Show/hide
Query:  MKSPKARIVIKENHLYDNSNSASSRSKKESHFDVMSIMMADVTGVTAMTKMERKINLLMKVIKERDHEIAALREQMQTREL-------------------
        M+SPK  IV+KEN LYDNS+SAS +SKKE+H +VMS+MMAD+T   AM +M+RK+N L K+++ERDHEI ALREQ++TRE                    
Subjt:  MKSPKARIVIKENHLYDNSNSASSRSKKESHFDVMSIMMADVTGVTAMTKMERKINLLMKVIKERDHEIAALREQMQTREL-------------------

Query:  ---------LSRVNLLLSKL--------------------------------------------------------------------------------
                 +S  +LL+ +L                                                                                
Subjt:  ---------LSRVNLLLSKL--------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------DEVPEIIACHAINVIEEENISLRSLEEERVSKDLSMFNVDDLLSLPQETKSILIDVLLNSRASSLSAPTSTTHESASYCMSIGFSNEDLLLGSK
              DE   ++ACHAIN  EEE+I LRSLEEE VSKDLS FNVDDLLS PQETK+IL++ LLN  AS+ S PT+ T+ES SYCMSI FS EDLLLGSK
Subjt:  ------DEVPEIIACHAINVIEEENISLRSLEEERVSKDLSMFNVDDLLSLPQETKSILIDVLLNSRASSLSAPTSTTHESASYCMSIGFSNEDLLLGSK

Query:  LHNRPLYV
        LHNRPLYV
Subjt:  LHNRPLYV

A0A5D3BE72 Ty3-gypsy retrotransposon protein4.9e-3260.4Show/hide
Query:  TAMTKMERKINLLMKVIKERDHEIAALREQMQTRELLSRVNLLLSKLDEVPEIIACHAINVIEEENISLRSLEEERVSKDLSMFNVDDLLSLPQETKSIL
        T   K ++K   L K+I E D +     +++ T         L    DE PE++ACHAI+ IEEE+I LRSLEEE VSKDL  FNVDDLLSLPQETK+IL
Subjt:  TAMTKMERKINLLMKVIKERDHEIAALREQMQTRELLSRVNLLLSKLDEVPEIIACHAINVIEEENISLRSLEEERVSKDLSMFNVDDLLSLPQETKSIL

Query:  IDVLLNSRASSLSAPTSTTHESASYCMSIGFSNEDLLLGSKLHNRPLYV
        I+ LLNS ASS SAPT+ T+ES  YCMSI FS+EDLLLGSKLHNRPLYV
Subjt:  IDVLLNSRASSLSAPTSTTHESASYCMSIGFSNEDLLLGSKLHNRPLYV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTCTCCTAAGGCTAGGATTGTCATCAAGGAAAATCACTTGTATGATAACTCTAATTCTGCCTCTAGCAGATCAAAGAAGGAATCACACTTTGATGTGATGTCTAT
CATGATGGCTGATGTAACAGGTGTGACTGCCATGACAAAGATGGAAAGGAAAATCAATCTCCTGATGAAAGTTATCAAGGAGCGAGACCACGAAATCGCAGCTTTGAGAG
AGCAAATGCAGACTCGTGAATTGTTGAGTCGAGTCAATCTCTTATTGTCAAAGCTGGATGAAGTTCCAGAAATCATTGCGTGTCATGCTATCAACGTGATAGAGGAAGAA
AACATCTCTCTAAGATCACTAGAGGAAGAGAGAGTGTCAAAAGACCTGTCGATGTTCAATGTGGATGATCTGTTATCACTTCCTCAAGAAACCAAGAGCATCCTTATTGA
TGTATTGTTAAATTCAAGAGCATCAAGTTTGAGTGCTCCGACCTCTACGACACACGAGAGTGCTTCTTATTGTATGTCTATAGGCTTCTCAAATGAGGATCTGTTGTTGG
GGTCCAAACTTCATAATAGACCCTTGTATGTTAAGGATACGTTCGAGTATAGAGAGTTGACCAGATTCTCATCGGTAATGGATCAGTTGTCAACATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGTCTCCTAAGGCTAGGATTGTCATCAAGGAAAATCACTTGTATGATAACTCTAATTCTGCCTCTAGCAGATCAAAGAAGGAATCACACTTTGATGTGATGTCTAT
CATGATGGCTGATGTAACAGGTGTGACTGCCATGACAAAGATGGAAAGGAAAATCAATCTCCTGATGAAAGTTATCAAGGAGCGAGACCACGAAATCGCAGCTTTGAGAG
AGCAAATGCAGACTCGTGAATTGTTGAGTCGAGTCAATCTCTTATTGTCAAAGCTGGATGAAGTTCCAGAAATCATTGCGTGTCATGCTATCAACGTGATAGAGGAAGAA
AACATCTCTCTAAGATCACTAGAGGAAGAGAGAGTGTCAAAAGACCTGTCGATGTTCAATGTGGATGATCTGTTATCACTTCCTCAAGAAACCAAGAGCATCCTTATTGA
TGTATTGTTAAATTCAAGAGCATCAAGTTTGAGTGCTCCGACCTCTACGACACACGAGAGTGCTTCTTATTGTATGTCTATAGGCTTCTCAAATGAGGATCTGTTGTTGG
GGTCCAAACTTCATAATAGACCCTTGTATGTTAAGGATACGTTCGAGTATAGAGAGTTGACCAGATTCTCATCGGTAATGGATCAGTTGTCAACATAA
Protein sequenceShow/hide protein sequence
MKSPKARIVIKENHLYDNSNSASSRSKKESHFDVMSIMMADVTGVTAMTKMERKINLLMKVIKERDHEIAALREQMQTRELLSRVNLLLSKLDEVPEIIACHAINVIEEE
NISLRSLEEERVSKDLSMFNVDDLLSLPQETKSILIDVLLNSRASSLSAPTSTTHESASYCMSIGFSNEDLLLGSKLHNRPLYVKDTFEYRELTRFSSVMDQLST