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PI0002313 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002313
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr11:11163375..11163656
RNA-Seq ExpressionPI0002313
SyntenyPI0002313
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]9.0e-3080.49Show/hide
Query:  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSRHFNLVLLAVLKLSDELLAKPQP
        MDRRCFAILCHLL+T  GL STE++DVEEMVAMFLH+LAHDVKNRVIQ EF+ SGET+SRHFN+VLLAV++L DELL KPQP
Subjt:  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSRHFNLVLLAVLKLSDELLAKPQP
KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]9.0e-3080.49Show/hide
Query:  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSRHFNLVLLAVLKLSDELLAKPQP
        MDRRCFAILCHLL+T  GL STE++DVEEMVAMFLH+LAHDVKNRVIQ EF+ SGET+SRHFN+VLLAV++L DELL KPQP
Subjt:  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSRHFNLVLLAVLKLSDELLAKPQP
KAA0048361.1 retrotransposon protein [Cucumis melo var. makuwa]9.0e-3069.39Show/hide
Query:  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSRHFNLVLLAVLKLSDELLAKPQP----------KWVHRC
        MDRRCFAILCHLL+T  GL STE++DVEEMVAMFLH+LAHDVKNRVIQ EF+ SGET+SRHFN+VLLAV++L +ELL KPQP          KW   C
Subjt:  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSRHFNLVLLAVLKLSDELLAKPQP----------KWVHRC
KAA0057637.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.2e-2979.27Show/hide
Query:  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSRHFNLVLLAVLKLSDELLAKPQP
        MDRRCFAILCHLL+T  GL STE++DVEEM+AMFLH+LAHDVKNRVIQ EF+ SGET+SRHFN+VLLAV++L DELL KPQP
Subjt:  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSRHFNLVLLAVLKLSDELLAKPQP
XP_008441953.1 PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo]1.2e-2970.41Show/hide
Query:  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSRHFNLVLLAVLKLSDELLAKPQP----------KWVHRC
        MDRRCFAILCHLL+T+ GL  TE+IDVEEMVAMFLH+LAHDVKNR+IQ EF  SGETVSRHFN+VLLA+L+L DELL KPQP          KW   C
Subjt:  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSRHFNLVLLAVLKLSDELLAKPQP----------KWVHRC
TrEMBL top hitse value%identityAlignment
A0A5A7SWD8 Retrotransposon protein4.4e-3080.49Show/hide
Query:  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSRHFNLVLLAVLKLSDELLAKPQP
        MDRRCFAILCHLL+T  GL STE++DVEEMVAMFLH+LAHDVKNRVIQ EF+ SGET+SRHFN+VLLAV++L DELL KPQP
Subjt:  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSRHFNLVLLAVLKLSDELLAKPQP
A0A5A7TXW1 Retrotransposon protein4.4e-3080.49Show/hide
Query:  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSRHFNLVLLAVLKLSDELLAKPQP
        MDRRCFAILCHLL+T  GL STE++DVEEMVAMFLH+LAHDVKNRVIQ EF+ SGET+SRHFN+VLLAV++L DELL KPQP
Subjt:  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSRHFNLVLLAVLKLSDELLAKPQP
A0A5A7U476 Retrotransposon protein4.4e-3069.39Show/hide
Query:  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSRHFNLVLLAVLKLSDELLAKPQP----------KWVHRC
        MDRRCFAILCHLL+T  GL STE++DVEEMVAMFLH+LAHDVKNRVIQ EF+ SGET+SRHFN+VLLAV++L +ELL KPQP          KW   C
Subjt:  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSRHFNLVLLAVLKLSDELLAKPQP----------KWVHRC
A0A5A7USI0 Putative nuclease HARBI15.7e-3079.27Show/hide
Query:  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSRHFNLVLLAVLKLSDELLAKPQP
        MDRRCFAILCHLL+T  GL STE++DVEEM+AMFLH+LAHDVKNRVIQ EF+ SGET+SRHFN+VLLAV++L DELL KPQP
Subjt:  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSRHFNLVLLAVLKLSDELLAKPQP
A0A5D3CDG6 Putative nuclease HARBI15.7e-3070.41Show/hide
Query:  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSRHFNLVLLAVLKLSDELLAKPQP----------KWVHRC
        MDRRCFAILCHLL+T+ GL  TE+IDVEEMVAMFLH+LAHDVKNR+IQ EF  SGETVSRHFN+VLLA+L+L DELL KPQP          KW   C
Subjt:  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSRHFNLVLLAVLKLSDELLAKPQP----------KWVHRC
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein5.5e-0939.08Show/hide
Query:  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSRHFNLVLLAVLKLSDELLAKPQPKWVHR
        M   CF  LC++LQTN  LQ T  I +EE VAMFL +  H+   R +   F  + ETV R F  VL A   L+ + +  P  + ++R
Subjt:  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSRHFNLVLLAVLKLSDELLAKPQPKWVHR
AT5G28730.1 unknown protein6.3e-0536.36Show/hide
Query:  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSRHFNLVLLAVLKLSDELL
        M    F  LC +L    GLQS+  I ++E VA+FL + A +   R I   F  + ET+ R F+ VL A+ +L+ E +
Subjt:  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSRHFNLVLLAVLKLSDELL
AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)1.1e-1245.33Show/hide
Query:  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSRHFNLVLLAVLKLSDE
        MD+  F  LC LLQT   L+ T  I +E  +A+FL ++ H+++ R +Q  F +SGET+SRHFN VL AV+ +S +
Subjt:  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSRHFNLVLLAVLKLSDE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGACGATGCTTCGCCATTTTATGCCATCTACTGCAGACTAACACTGGATTACAGTCTACTGAAATTATTGATGTCGAAGAAATGGTGGCAATGTTCCTTCACGT
ACTTGCGCACGACGTGAAAAATCGTGTCATTCAACATGAGTTCCTATGGTCTGGTGAGACGGTTTCACGACATTTCAACCTGGTACTCCTGGCTGTTTTAAAGCTTTCTG
ACGAGCTGTTGGCGAAACCACAACCGAAATGGGTGCACAGATGCACGATGGAGGTGGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAGACGATGCTTCGCCATTTTATGCCATCTACTGCAGACTAACACTGGATTACAGTCTACTGAAATTATTGATGTCGAAGAAATGGTGGCAATGTTCCTTCACGT
ACTTGCGCACGACGTGAAAAATCGTGTCATTCAACATGAGTTCCTATGGTCTGGTGAGACGGTTTCACGACATTTCAACCTGGTACTCCTGGCTGTTTTAAAGCTTTCTG
ACGAGCTGTTGGCGAAACCACAACCGAAATGGGTGCACAGATGCACGATGGAGGTGGTTTGA
Protein sequenceShow/hide protein sequence
MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSRHFNLVLLAVLKLSDELLAKPQPKWVHRCTMEVV