; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0002327 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002327
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr05:8054943..8055409
RNA-Seq ExpressionPI0002327
SyntenyPI0002327
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037547.1 uncharacterized protein E6C27_scaffold277G001660 [Cucumis melo var. makuwa]3.1e-0955.74Show/hide
Query:  IISSEKERCKRFQRGLNFDIRTPVTSYTAWCNFSDLVEAAIRVEKSLGKEEEKEIMVSMGS
        II+SE +RC+RF+RGL F+IRTPVT+   W NFS LVE A+RVE+S+  EE+  + +S G+
Subjt:  IISSEKERCKRFQRGLNFDIRTPVTSYTAWCNFSDLVEAAIRVEKSLGKEEEKEIMVSMGS

KAA0037805.1 uncharacterized protein E6C27_scaffold918G00190 [Cucumis melo var. makuwa]4.0e-0937.84Show/hide
Query:  IISSEKERCKRFQRGLNFDIRTPVTSYTAWCNFSDLVEAAIRVEKSLGKEEEKEIMVSMGSD--------------KNMERASREEFKAGGISRSVINAE
        II+SE +RC+RF+RGL F+IRTPVT+   W NFS LVE A+RVE+S+  EE+  + +S G+                 +  +SR++FK     ++  N  
Subjt:  IISSEKERCKRFQRGLNFDIRTPVTSYTAWCNFSDLVEAAIRVEKSLGKEEEKEIMVSMGSD--------------KNMERASREEFKAGGISRSVINAE

Query:  RRDIFKKIIQR
           +F++  QR
Subjt:  RRDIFKKIIQR

KAA0053322.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]2.4e-0937.39Show/hide
Query:  IISSEKERCKRFQRGLNFDIRTPVTSYTAWCNFSDLVEAAIRVEKSLGKEEEKEIMVSMGSD--------------KNMERASREEFKAGGISRSVINAE
        II+SE +RC+R +RGL F+IRTPVT+   W NFS LVE A+RVE+S+ KEE+  + +S G+                 +  +SR++FK     ++  N  
Subjt:  IISSEKERCKRFQRGLNFDIRTPVTSYTAWCNFSDLVEAAIRVEKSLGKEEEKEIMVSMGSD--------------KNMERASREEFKAGGISRSVINAE

Query:  RRDIFKKIIQRKLCK
           +F++  QR  C+
Subjt:  RRDIFKKIIQRKLCK

KAA0067811.1 putative Gag-pol protein [Cucumis melo var. makuwa]3.1e-0938.74Show/hide
Query:  IISSEKERCKRFQRGLNFDIRTPVTSYTAWCNFSDLVEAAIRVEKSLGKEEEKEIMVSMGSD--------------KNMERASREEFKAGGISRSVINAE
        II+SE +RC+RF+RGL F+IRTPVT+   W NFS LVE AIRVE+S+  EE+  + +S G+                 +  +SR++FK     ++  N  
Subjt:  IISSEKERCKRFQRGLNFDIRTPVTSYTAWCNFSDLVEAAIRVEKSLGKEEEKEIMVSMGSD--------------KNMERASREEFKAGGISRSVINAE

Query:  RRDIFKKIIQR
           +F++  QR
Subjt:  RRDIFKKIIQR

TYK15340.1 uncharacterized protein E5676_scaffold16974G00010 [Cucumis melo var. makuwa]1.4e-0955.74Show/hide
Query:  IISSEKERCKRFQRGLNFDIRTPVTSYTAWCNFSDLVEAAIRVEKSLGKEEEKEIMVSMGS
        I++SE +RC+RF+RGL F+IRTPVT+ T W NFS LVE A+RVE+S+  EE+  + +S G+
Subjt:  IISSEKERCKRFQRGLNFDIRTPVTSYTAWCNFSDLVEAAIRVEKSLGKEEEKEIMVSMGS

TrEMBL top hitse value%identityAlignment
A0A5A7T7M1 Retrotrans_gag domain-containing protein1.5e-0955.74Show/hide
Query:  IISSEKERCKRFQRGLNFDIRTPVTSYTAWCNFSDLVEAAIRVEKSLGKEEEKEIMVSMGS
        II+SE +RC+RF+RGL F+IRTPVT+   W NFS LVE A+RVE+S+  EE+  + +S G+
Subjt:  IISSEKERCKRFQRGLNFDIRTPVTSYTAWCNFSDLVEAAIRVEKSLGKEEEKEIMVSMGS

A0A5A7T8K4 Retrotrans_gag domain-containing protein2.0e-0937.84Show/hide
Query:  IISSEKERCKRFQRGLNFDIRTPVTSYTAWCNFSDLVEAAIRVEKSLGKEEEKEIMVSMGSD--------------KNMERASREEFKAGGISRSVINAE
        II+SE +RC+RF+RGL F+IRTPVT+   W NFS LVE A+RVE+S+  EE+  + +S G+                 +  +SR++FK     ++  N  
Subjt:  IISSEKERCKRFQRGLNFDIRTPVTSYTAWCNFSDLVEAAIRVEKSLGKEEEKEIMVSMGSD--------------KNMERASREEFKAGGISRSVINAE

Query:  RRDIFKKIIQR
           +F++  QR
Subjt:  RRDIFKKIIQR

A0A5A7UC49 Reverse transcriptase1.1e-0937.39Show/hide
Query:  IISSEKERCKRFQRGLNFDIRTPVTSYTAWCNFSDLVEAAIRVEKSLGKEEEKEIMVSMGSD--------------KNMERASREEFKAGGISRSVINAE
        II+SE +RC+R +RGL F+IRTPVT+   W NFS LVE A+RVE+S+ KEE+  + +S G+                 +  +SR++FK     ++  N  
Subjt:  IISSEKERCKRFQRGLNFDIRTPVTSYTAWCNFSDLVEAAIRVEKSLGKEEEKEIMVSMGSD--------------KNMERASREEFKAGGISRSVINAE

Query:  RRDIFKKIIQRKLCK
           +F++  QR  C+
Subjt:  RRDIFKKIIQRKLCK

A0A5A7VQD2 Putative Gag-pol protein1.5e-0938.74Show/hide
Query:  IISSEKERCKRFQRGLNFDIRTPVTSYTAWCNFSDLVEAAIRVEKSLGKEEEKEIMVSMGSD--------------KNMERASREEFKAGGISRSVINAE
        II+SE +RC+RF+RGL F+IRTPVT+   W NFS LVE AIRVE+S+  EE+  + +S G+                 +  +SR++FK     ++  N  
Subjt:  IISSEKERCKRFQRGLNFDIRTPVTSYTAWCNFSDLVEAAIRVEKSLGKEEEKEIMVSMGSD--------------KNMERASREEFKAGGISRSVINAE

Query:  RRDIFKKIIQR
           +F++  QR
Subjt:  RRDIFKKIIQR

A0A5D3CVE9 CCHC-type domain-containing protein6.7e-1055.74Show/hide
Query:  IISSEKERCKRFQRGLNFDIRTPVTSYTAWCNFSDLVEAAIRVEKSLGKEEEKEIMVSMGS
        I++SE +RC+RF+RGL F+IRTPVT+ T W NFS LVE A+RVE+S+  EE+  + +S G+
Subjt:  IISSEKERCKRFQRGLNFDIRTPVTSYTAWCNFSDLVEAAIRVEKSLGKEEEKEIMVSMGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATTATTTCGTCAGAGAAAGAAAGATGTAAGCGTTTCCAAAGAGGATTGAATTTTGATATACGGACACCAGTAACTTCTTATACCGCTTGGTGCAATTTCTCAGA
TTTGGTGGAGGCAGCTATTCGAGTTGAGAAGAGTTTAGGAAAAGAGGAAGAGAAAGAAATCATGGTTTCTATGGGAAGTGATAAAAATATGGAAAGAGCTAGTAGAGAAG
AGTTTAAAGCGGGAGGTATATCGCGGAGTGTTATAAATGCAGAAAGGAGAGATATTTTCAAAAAGATTATCCAGAGAAAACTATGCAAAGCAAGGAGCAGCTACAAACAG
AGTTGGTTTCTCAATCAGTTCAGCGACCCACTCAAGGTTCCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATTATTTCGTCAGAGAAAGAAAGATGTAAGCGTTTCCAAAGAGGATTGAATTTTGATATACGGACACCAGTAACTTCTTATACCGCTTGGTGCAATTTCTCAGA
TTTGGTGGAGGCAGCTATTCGAGTTGAGAAGAGTTTAGGAAAAGAGGAAGAGAAAGAAATCATGGTTTCTATGGGAAGTGATAAAAATATGGAAAGAGCTAGTAGAGAAG
AGTTTAAAGCGGGAGGTATATCGCGGAGTGTTATAAATGCAGAAAGGAGAGATATTTTCAAAAAGATTATCCAGAGAAAACTATGCAAAGCAAGGAGCAGCTACAAACAG
AGTTGGTTTCTCAATCAGTTCAGCGACCCACTCAAGGTTCCATAA
Protein sequenceShow/hide protein sequence
MEIISSEKERCKRFQRGLNFDIRTPVTSYTAWCNFSDLVEAAIRVEKSLGKEEEKEIMVSMGSDKNMERASREEFKAGGISRSVINAERRDIFKKIIQRKLCKARSSYKQ
SWFLNQFSDPLKVP