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PI0002354 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002354
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionPSII 6.1 kDa protein
Genome locationchr05:2245176..2247407
RNA-Seq ExpressionPI0002354
SyntenyPI0002354
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139238.1 photosystem II reaction center W protein, chloroplastic [Cucumis sativus]9.9e-4490.91Show/hide
Query:  MAAHRLPILQKMKKGGIKCRVEEKPEGKK-SEESMVSGAVAAVAMAAWATAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSL
        MAAHRLP LQKMKKGGIKC VEEKPEGKK SEESMV G V AVAMAA A AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVF LIWALYF+YASSL
Subjt:  MAAHRLPILQKMKKGGIKCRVEEKPEGKK-SEESMVSGAVAAVAMAAWATAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSL

Query:  DEDEDSGLSL
        DEDEDSGLSL
Subjt:  DEDEDSGLSL

XP_008456049.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucumis melo]1.9e-4288.07Show/hide
Query:  MAAHRLPILQKMKKGGIKCRVEEKPEGKKSEESMVSGAVAAVAMAAWATAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSLD
        MAA RLP LQKMK G IKC+VEEKPEGKKSEESMV G VAAVAMAA A AGPAVALVDER+STEGTGLPFGLSNNLLGWILA +FGLIWALYF+YASSLD
Subjt:  MAAHRLPILQKMKKGGIKCRVEEKPEGKKSEESMVSGAVAAVAMAAWATAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSLD

Query:  EDEDSGLSL
        EDEDSGLSL
Subjt:  EDEDSGLSL

XP_016902308.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X1 [Cucumis melo]1.3e-4088.46Show/hide
Query:  LPILQKMKKGGIKCRVEEKPEGKKSEESMVSGAVAAVAMAAWATAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSLDEDEDS
        LP LQKMK G IKC+VEEKPEGKKSEESMV G VAAVAMAA A AGPAVALVDER+STEGTGLPFGLSNNLLGWILA +FGLIWALYF+YASSLDEDEDS
Subjt:  LPILQKMKKGGIKCRVEEKPEGKKSEESMVSGAVAAVAMAAWATAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSLDEDEDS

Query:  GLSL
        GLSL
Subjt:  GLSL

XP_023521133.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo subsp. pepo]1.3e-4082.57Show/hide
Query:  MAAHRLPILQKMKKGGIKCRVEEKPEGKKSEESMVSGAVAAVAMAAWATAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSLD
        MAAHRL ++QKMKKGGIKCR+EEK EGK+S+ESM+SG VAAVA    A AGPAVALVDERLSTEGTGLPFGLSNNLLGWILA +FG IWALYF+YASSL+
Subjt:  MAAHRLPILQKMKKGGIKCRVEEKPEGKKSEESMVSGAVAAVAMAAWATAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSLD

Query:  EDEDSGLSL
        EDEDSGLSL
Subjt:  EDEDSGLSL

XP_038890119.1 photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]4.0e-4590.83Show/hide
Query:  MAAHRLPILQKMKKGGIKCRVEEKPEGKKSEESMVSGAVAAVAMAAWATAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSLD
        +AAHRLP+LQKMKKGGIKCRVEEKPEGKKSEES+VSG +AAVAMAA A AGPAVALVDERLSTEGTGLPFGLSNNLLGWILA VF LIWALYF+YASSLD
Subjt:  MAAHRLPILQKMKKGGIKCRVEEKPEGKKSEESMVSGAVAAVAMAAWATAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSLD

Query:  EDEDSGLSL
        EDEDSGLSL
Subjt:  EDEDSGLSL

TrEMBL top hitse value%identityAlignment
A0A0A0LJA2 PSII 6.1 kDa protein4.8e-4490.91Show/hide
Query:  MAAHRLPILQKMKKGGIKCRVEEKPEGKK-SEESMVSGAVAAVAMAAWATAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSL
        MAAHRLP LQKMKKGGIKC VEEKPEGKK SEESMV G V AVAMAA A AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVF LIWALYF+YASSL
Subjt:  MAAHRLPILQKMKKGGIKCRVEEKPEGKK-SEESMVSGAVAAVAMAAWATAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSL

Query:  DEDEDSGLSL
        DEDEDSGLSL
Subjt:  DEDEDSGLSL

A0A1S3C2B0 PSII 6.1 kDa protein9.0e-4388.07Show/hide
Query:  MAAHRLPILQKMKKGGIKCRVEEKPEGKKSEESMVSGAVAAVAMAAWATAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSLD
        MAA RLP LQKMK G IKC+VEEKPEGKKSEESMV G VAAVAMAA A AGPAVALVDER+STEGTGLPFGLSNNLLGWILA +FGLIWALYF+YASSLD
Subjt:  MAAHRLPILQKMKKGGIKCRVEEKPEGKKSEESMVSGAVAAVAMAAWATAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSLD

Query:  EDEDSGLSL
        EDEDSGLSL
Subjt:  EDEDSGLSL

A0A1S4E257 PSII 6.1 kDa protein6.5e-4188.46Show/hide
Query:  LPILQKMKKGGIKCRVEEKPEGKKSEESMVSGAVAAVAMAAWATAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSLDEDEDS
        LP LQKMK G IKC+VEEKPEGKKSEESMV G VAAVAMAA A AGPAVALVDER+STEGTGLPFGLSNNLLGWILA +FGLIWALYF+YASSLDEDEDS
Subjt:  LPILQKMKKGGIKCRVEEKPEGKKSEESMVSGAVAAVAMAAWATAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSLDEDEDS

Query:  GLSL
        GLSL
Subjt:  GLSL

A0A6J1FBR0 PSII 6.1 kDa protein8.4e-4180.73Show/hide
Query:  MAAHRLPILQKMKKGGIKCRVEEKPEGKKSEESMVSGAVAAVAMAAWATAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSLD
        MAAHRLP++QKMKKGGIKC++EEK EGK+S+ES++SG VAA+A    A AGPAVALVDERLSTEGTGLPFGLSNNLLGWILA +FG IWALYF+YASSL+
Subjt:  MAAHRLPILQKMKKGGIKCRVEEKPEGKKSEESMVSGAVAAVAMAAWATAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSLD

Query:  EDEDSGLSL
        EDEDSGLSL
Subjt:  EDEDSGLSL

A0A6J1HLU7 PSII 6.1 kDa protein6.0e-3980.73Show/hide
Query:  MAAHRLPILQKMKKGGIKCRVEEKPEGKKSEESMVSGAVAAVAMAAWATAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSLD
        MAAHRL ++QK KKGGIKCR+EEK E K S+ESM+SG VAAVA    A AGPAVALVDERLSTEGTGLPFGLSNNLLGWILA +FG IWALYF+YASSL+
Subjt:  MAAHRLPILQKMKKGGIKCRVEEKPEGKKSEESMVSGAVAAVAMAAWATAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSLD

Query:  EDEDSGLSL
        EDEDSGLSL
Subjt:  EDEDSGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic5.3e-2459.43Show/hide
Query:  LPILQKMKKGGIKCRVEEKPEGKKSEESMVSGAVAAVAMAAWAT--AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSLDEDE
        LP + K KKGG++C +E     K+   S++   V+A A AA     + PA+ALVDER+STEGTGLPFGLSNNLLGWIL  VFGLIW  +F+Y SSL+EDE
Subjt:  LPILQKMKKGGIKCRVEEKPEGKKSEESMVSGAVAAVAMAAWAT--AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSLDEDE

Query:  DSGLSL
        +SGLSL
Subjt:  DSGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic5.3e-2459.43Show/hide
Query:  LPILQKMKKGGIKCRVEEKPEGKK--SEESMVSGAVAAVAMAAWATAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSLDEDE
        LP + K  K  + C +E KP   +  +  +   GA    A AA   + PA+ALVDER+STEGTGLPFGLSNNLLGWIL  VFGLIWALYF+YAS L+EDE
Subjt:  LPILQKMKKGGIKCRVEEKPEGKK--SEESMVSGAVAAVAMAAWATAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSLDEDE

Query:  DSGLSL
        +SGLSL
Subjt:  DSGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic5.1e-1953.47Show/hide
Query:  LPILQKMKKGGIKCRVEEKPEGKKSEESMVSGAVAAVAMAAWATAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSLDEDEDS
        LP ++  +   ++C   ++     +  + V GA A++ +A  ATA PA+ALVDER+STEGTGL  GLSNNLLGWIL  VFGLIW+LY IY S L+EDE+S
Subjt:  LPILQKMKKGGIKCRVEEKPEGKKSEESMVSGAVAAVAMAAWATAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSLDEDEDS

Query:  G
        G
Subjt:  G

Q9SPI9 Photosystem II reaction center W protein, chloroplastic7.4e-1047.5Show/hide
Query:  SMVSGAVAAVA-MAAWATAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSLD--EDEDSGLSL
        S V+  VA ++ + A   A PA ALVDER++ +GTG PFG+++ +LGW+L  VFG +WA++FI    L   ED D GL L
Subjt:  SMVSGAVAAVA-MAAWATAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSLD--EDEDSGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W3.8e-2559.43Show/hide
Query:  LPILQKMKKGGIKCRVEEKPEGKKSEESMVSGAVAAVAMAAWAT--AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSLDEDE
        LP + K KKGG++C +E     K+   S++   V+A A AA     + PA+ALVDER+STEGTGLPFGLSNNLLGWIL  VFGLIW  +F+Y SSL+EDE
Subjt:  LPILQKMKKGGIKCRVEEKPEGKKSEESMVSGAVAAVAMAAWAT--AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSLDEDE

Query:  DSGLSL
        +SGLSL
Subjt:  DSGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCTCACAGGTTGCCCATATTGCAAAAGATGAAGAAGGGAGGGATAAAATGTAGGGTGGAAGAGAAGCCAGAAGGGAAGAAGTCAGAAGAAAGCATGGTTTCCGG
GGCAGTCGCCGCAGTGGCGATGGCTGCATGGGCCACGGCGGGACCCGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGGACAGGGCTGCCTTTTGGTTTAAGCA
ACAACCTTCTTGGGTGGATTTTGGCTGTGGTGTTTGGTTTAATTTGGGCTCTATATTTTATCTATGCTTCATCCTTAGATGAGGATGAAGATTCTGGTTTGTCACTTTGA
mRNA sequenceShow/hide mRNA sequence
GTGGGGAGCAAAGATTGGATGAATAAGGATTGAGTATACAAAACTGTTTGGCTGTTCTCATATCCAAACTGTGTGGTGCATAAAAATGAAAACTTTTCATTACCCTCAAC
TTAAAAACACAAAAAAAAAACACAAAAAAAAAACACAAGAACATTCTCTAGATCCAAGTTTTACAGCCAAACAAAAGCCTTTCCCTTCATCCTCAAGCAGGTGTTTTTAG
CTGCAAAAATGGCTTCCACTCTGCTTCCTCACTCCAGGCTTTTACTCAAAGCATCATCCAAGCTTCTTCCATCCCAACAATGGCAGCTCACAGGTTGCCCATATTGCAAA
AGATGAAGAAGGGAGGGATAAAATGTAGGGTGGAAGAGAAGCCAGAAGGGAAGAAGTCAGAAGAAAGCATGGTTTCCGGGGCAGTCGCCGCAGTGGCGATGGCTGCATGG
GCCACGGCGGGACCCGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGGACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTTGGGTGGATTTTGGCTGTGGT
GTTTGGTTTAATTTGGGCTCTATATTTTATCTATGCTTCATCCTTAGATGAGGATGAAGATTCTGGTTTGTCACTTTGAATCAATCATAAAAATTTCTTAATAAAAAAAT
TGACTGATTTTTAAAATAGGAGTAATTGTTATGAATCGAGTTTAAGATATTTAAATTCTAAGTGTATCTAAGTTGTATTCATCTTTTCATCGTCCACCTAATTGTTCAAT
CATAATTTTTTATGTATTAAATCTTTTTCTTCAATAATCTTTTTCATCCTTTTTTGTTCTCTAAAATATGAATACGGTTACGAATCACGTATAAATATCTACATTTTCA
Protein sequenceShow/hide protein sequence
MAAHRLPILQKMKKGGIKCRVEEKPEGKKSEESMVSGAVAAVAMAAWATAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFGLIWALYFIYASSLDEDEDSGLSL