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PI0002410 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002410
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr04:24550897..24553653
RNA-Seq ExpressionPI0002410
SyntenyPI0002410
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025369.1 uncharacterized protein E6C27_scaffold1204G00530 [Cucumis melo var. makuwa]1.0e-3073.64Show/hide
Query:  AYDEDLNREVRRIRRERRKE-TIDNLP-QDPIENQEPNLD---HPNLDRVNMGQVREKTLRELSEPDEDQRPLCIVIPSTTQPFELKPGLIHLLPIYKGS
        +Y EDLNREVRRIRRERR+E +I NL  Q+P+   EP+LD    PNL R N+G+VREKTLREL+EPDEDQRPLCIVIPSTTQPFELK GLIHLL I+KGS
Subjt:  AYDEDLNREVRRIRRERRKE-TIDNLP-QDPIENQEPNLD---HPNLDRVNMGQVREKTLRELSEPDEDQRPLCIVIPSTTQPFELKPGLIHLLPIYKGS

Query:  SEEDPHKHLK
          ED HKHLK
Subjt:  SEEDPHKHLK

KAA0031967.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.5e-2970.54Show/hide
Query:  EEAYDEDLNREVRRIRRERRKE-TIDNLP-QDPIENQEPNLD---HPNLDRVNMGQVREKTLRELSEPDEDQRPLCIVIPSTTQPFELKPGLIHLLPIYK
        E  Y EDLN+EVRRIRRERR+E  I NL  Q+P+   EP+LD    PNL R NMG+VREKT+R+L E DEDQRPLCIVI  TTQPFELKP LIHLLPI+K
Subjt:  EEAYDEDLNREVRRIRRERRKE-TIDNLP-QDPIENQEPNLD---HPNLDRVNMGQVREKTLRELSEPDEDQRPLCIVIPSTTQPFELKPGLIHLLPIYK

Query:  GSSEEDPHKHLK
        G+S EDPHKHLK
Subjt:  GSSEEDPHKHLK

KAA0035535.1 uncharacterized protein E6C27_scaffold285G002020 [Cucumis melo var. makuwa]1.3e-3073.21Show/hide
Query:  EEAYDEDLNREVRRIRRERRKE-TIDNLP-QDPIENQEPNLD---HPNLDRVNMGQVREKTLRELSEPDEDQRPLCIVIPSTTQPFELKPGLIHLLPIYK
        E +Y EDLNREVRRIRRER++E +I NL  Q+P+   EP LD    PNL R NMG+VREKTLREL E DEDQRPLCIVIP TTQPFELKP LIHLLPI+K
Subjt:  EEAYDEDLNREVRRIRRERRKE-TIDNLP-QDPIENQEPNLD---HPNLDRVNMGQVREKTLRELSEPDEDQRPLCIVIPSTTQPFELKPGLIHLLPIYK

Query:  GSSEEDPHKHLK
        GSS EDPHK+LK
Subjt:  GSSEEDPHKHLK

KAA0060435.1 reverse transcriptase [Cucumis melo var. makuwa]2.5e-2970.54Show/hide
Query:  EEAYDEDLNREVRRIRRERRKE-TIDNLP-QDPIENQEPNLDH---PNLDRVNMGQVREKTLRELSEPDEDQRPLCIVIPSTTQPFELKPGLIHLLPIYK
        E +Y EDLNREV RIRRE R+E +I +L  Q+P+   E +LD    PNL R NMG+VREKTLREL +PDEDQRPLCI+IP TTQPFELK GLIHLLPI+K
Subjt:  EEAYDEDLNREVRRIRRERRKE-TIDNLP-QDPIENQEPNLDH---PNLDRVNMGQVREKTLRELSEPDEDQRPLCIVIPSTTQPFELKPGLIHLLPIYK

Query:  GSSEEDPHKHLK
        GSS EDPHKHLK
Subjt:  GSSEEDPHKHLK

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.8e-3072.32Show/hide
Query:  EEAYDEDLNREVRRIRRERRKE-TIDNLP-QDPIENQEPNLD---HPNLDRVNMGQVREKTLRELSEPDEDQRPLCIVIPSTTQPFELKPGLIHLLPIYK
        E  Y EDLNREVRRIRRERR+E +I +L  Q+P+   EP+LD    PNL R NM +VREKTLREL+E DE+QRPLCIVIP TTQPFELKPGLIHLLPI+K
Subjt:  EEAYDEDLNREVRRIRRERRKE-TIDNLP-QDPIENQEPNLD---HPNLDRVNMGQVREKTLRELSEPDEDQRPLCIVIPSTTQPFELKPGLIHLLPIYK

Query:  GSSEEDPHKHLK
        GS  EDPHKHLK
Subjt:  GSSEEDPHKHLK

TrEMBL top hitse value%identityAlignment
A0A5A7SRF5 Retrotransposon gag protein1.2e-2970.54Show/hide
Query:  EEAYDEDLNREVRRIRRERRKE-TIDNLP-QDPIENQEPNLD---HPNLDRVNMGQVREKTLRELSEPDEDQRPLCIVIPSTTQPFELKPGLIHLLPIYK
        E  Y EDLN+EVRRIRRERR+E  I NL  Q+P+   EP+LD    PNL R NMG+VREKT+R+L E DEDQRPLCIVI  TTQPFELKP LIHLLPI+K
Subjt:  EEAYDEDLNREVRRIRRERRKE-TIDNLP-QDPIENQEPNLD---HPNLDRVNMGQVREKTLRELSEPDEDQRPLCIVIPSTTQPFELKPGLIHLLPIYK

Query:  GSSEEDPHKHLK
        G+S EDPHKHLK
Subjt:  GSSEEDPHKHLK

A0A5A7V3J9 Reverse transcriptase1.2e-2970.54Show/hide
Query:  EEAYDEDLNREVRRIRRERRKE-TIDNLP-QDPIENQEPNLDH---PNLDRVNMGQVREKTLRELSEPDEDQRPLCIVIPSTTQPFELKPGLIHLLPIYK
        E +Y EDLNREV RIRRE R+E +I +L  Q+P+   E +LD    PNL R NMG+VREKTLREL +PDEDQRPLCI+IP TTQPFELK GLIHLLPI+K
Subjt:  EEAYDEDLNREVRRIRRERRKE-TIDNLP-QDPIENQEPNLDH---PNLDRVNMGQVREKTLRELSEPDEDQRPLCIVIPSTTQPFELKPGLIHLLPIYK

Query:  GSSEEDPHKHLK
        GSS EDPHKHLK
Subjt:  GSSEEDPHKHLK

A0A5A7VQ60 Retrotransposon gag protein8.5e-3172.32Show/hide
Query:  EEAYDEDLNREVRRIRRERRKE-TIDNLP-QDPIENQEPNLD---HPNLDRVNMGQVREKTLRELSEPDEDQRPLCIVIPSTTQPFELKPGLIHLLPIYK
        E  Y EDLNREVRRIRRERR+E +I +L  Q+P+   EP+LD    PNL R NM +VREKTLREL+E DE+QRPLCIVIP TTQPFELKPGLIHLLPI+K
Subjt:  EEAYDEDLNREVRRIRRERRKE-TIDNLP-QDPIENQEPNLD---HPNLDRVNMGQVREKTLRELSEPDEDQRPLCIVIPSTTQPFELKPGLIHLLPIYK

Query:  GSSEEDPHKHLK
        GS  EDPHKHLK
Subjt:  GSSEEDPHKHLK

A0A5D3DIP6 Retrotrans_gag domain-containing protein5.0e-3173.64Show/hide
Query:  AYDEDLNREVRRIRRERRKE-TIDNLP-QDPIENQEPNLD---HPNLDRVNMGQVREKTLRELSEPDEDQRPLCIVIPSTTQPFELKPGLIHLLPIYKGS
        +Y EDLNREVRRIRRERR+E +I NL  Q+P+   EP+LD    PNL R N+G+VREKTLREL+EPDEDQRPLCIVIPSTTQPFELK GLIHLL I+KGS
Subjt:  AYDEDLNREVRRIRRERRKE-TIDNLP-QDPIENQEPNLD---HPNLDRVNMGQVREKTLRELSEPDEDQRPLCIVIPSTTQPFELKPGLIHLLPIYKGS

Query:  SEEDPHKHLK
          ED HKHLK
Subjt:  SEEDPHKHLK

A0A5D3E5X3 Uncharacterized protein6.5e-3173.21Show/hide
Query:  EEAYDEDLNREVRRIRRERRKE-TIDNLP-QDPIENQEPNLD---HPNLDRVNMGQVREKTLRELSEPDEDQRPLCIVIPSTTQPFELKPGLIHLLPIYK
        E +Y EDLNREVRRIRRER++E +I NL  Q+P+   EP LD    PNL R NMG+VREKTLREL E DEDQRPLCIVIP TTQPFELKP LIHLLPI+K
Subjt:  EEAYDEDLNREVRRIRRERRKE-TIDNLP-QDPIENQEPNLD---HPNLDRVNMGQVREKTLRELSEPDEDQRPLCIVIPSTTQPFELKPGLIHLLPIYK

Query:  GSSEEDPHKHLK
        GSS EDPHK+LK
Subjt:  GSSEEDPHKHLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGGAAGCATACGACGAAGACTTAAATAGGGAAGTGCGTAGGATTAGGAGAGAAAGGAGAAAAGAAACCATTGATAACCTTCCTCAAGATCCAATAGAAAACCA
AGAGCCAAACCTAGATCATCCAAACCTTGATAGAGTAAACATGGGACAAGTTAGGGAAAAGACCCTAAGAGAGCTCTCAGAACCTGATGAGGACCAAAGGCCTCTCTGTA
TTGTAATTCCCTCAACCACACAACCTTTTGAACTCAAACCCGGACTAATCCATCTCTTACCAATTTATAAGGGTAGTTCAGAAGAGGACCCTCATAAACACCTCAAGAAA
GCACGGTCGAGCAACCGACCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGGAAGCATACGACGAAGACTTAAATAGGGAAGTGCGTAGGATTAGGAGAGAAAGGAGAAAAGAAACCATTGATAACCTTCCTCAAGATCCAATAGAAAACCA
AGAGCCAAACCTAGATCATCCAAACCTTGATAGAGTAAACATGGGACAAGTTAGGGAAAAGACCCTAAGAGAGCTCTCAGAACCTGATGAGGACCAAAGGCCTCTCTGTA
TTGTAATTCCCTCAACCACACAACCTTTTGAACTCAAACCCGGACTAATCCATCTCTTACCAATTTATAAGGGTAGTTCAGAAGAGGACCCTCATAAACACCTCAAGAAA
GCACGGTCGAGCAACCGACCTTAA
Protein sequenceShow/hide protein sequence
MTEEAYDEDLNREVRRIRRERRKETIDNLPQDPIENQEPNLDHPNLDRVNMGQVREKTLRELSEPDEDQRPLCIVIPSTTQPFELKPGLIHLLPIYKGSSEEDPHKHLKK
ARSSNRP