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PI0002412 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002412
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr06:15758029..15758778
RNA-Seq ExpressionPI0002412
SyntenyPI0002412
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038192.1 hypothetical protein E6C27_scaffold270G00250 [Cucumis melo var. makuwa]2.7e-3659.2Show/hide
Query:  SSYNQIKATLDSMASNNEKWDEDDFDNRRGGRGRSDEGMDKNVVVALQGQMTAMNNLLRSMAISQVNVVGGSVHVANQIDDMRCVGCGGPHDTNACPLNT
        SSYNQI  TLDS+A NNE+WD+D FD+ RGGRG+++EG+D+NV+V  QGQMTAMNNLL+ M   QVN    S     Q+D++ C+  G PH  +ACPLN 
Subjt:  SSYNQIKATLDSMASNNEKWDEDDFDNRRGGRGRSDEGMDKNVVVALQGQMTAMNNLLRSMAISQVNVVGGSVHVANQIDDMRCVGCGGPHDTNACPLNT

Query:  KTVVFVRNDPFSNTYNPDWRNHPNF
        + V +V++DP+SNTYNP WRNHPNF
Subjt:  KTVVFVRNDPFSNTYNPDWRNHPNF

KAA0048713.1 hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa]3.8e-4356.05Show/hide
Query:  MVKACPHNGIPECILMEVFYFGLNKATQQTADVVFVGGMLKSSYNQIKATLDSMASNNEKWDEDDFDNR------RGGRGRSDEGMDKNVVVALQGQMTA
        M+K CPH+ IPEC+LME FYFGL+K T Q+A++VF GGML+SSYNQIK  LD+MASN+++W ++ F +R      +G RGR ++G+D +++VALQGQ+  
Subjt:  MVKACPHNGIPECILMEVFYFGLNKATQQTADVVFVGGMLKSSYNQIKATLDSMASNNEKWDEDDFDNR------RGGRGRSDEGMDKNVVVALQGQMTA

Query:  MNNLLRSMAISQVNVVGGSVHVANQIDDMRCVGCGGPHDTNACPLNTKTVVFVRNDP
        M N+L+SMA+ QVNVV  SV +  Q+++M CVGC  PH+TNACPLNT+ V +++NDP
Subjt:  MNNLLRSMAISQVNVVGGSVHVANQIDDMRCVGCGGPHDTNACPLNTKTVVFVRNDP

KGN44484.1 hypothetical protein Csa_015918 [Cucumis sativus]2.8e-3361.16Show/hide
Query:  MVKACPHNGIPECILMEVFYFGLNKATQQTADVVFVGGMLKSSYNQIKATLDSMASNNEKWDEDDFDNRRGGRGRSDEGMDKNVVVALQGQMTAMNNLLR
        +VKACP +GIPEC+ MEVFYFGL+K T Q  + +FVGGML+SSYNQIKATLDSM++N+++WD+  F +R   RGR+ EG+DK+VVV LQGQM AMNNLL+
Subjt:  MVKACPHNGIPECILMEVFYFGLNKATQQTADVVFVGGMLKSSYNQIKATLDSMASNNEKWDEDDFDNRRGGRGRSDEGMDKNVVVALQGQMTAMNNLLR

Query:  SMAISQVNVVGGSVHVANQID
        SM +SQVN     +H   Q++
Subjt:  SMAISQVNVVGGSVHVANQID

TYK11061.1 hypothetical protein E5676_scaffold73G00460 [Cucumis melo var. makuwa]1.1e-2951.45Show/hide
Query:  QVNVVGGSVHVANQIDDMRCVGCGGPHDTNACPLNTKTVVFVRNDPFSNTYNPDWRNHPNFGFGEERVNKI-KGDMVVKVTVAGKHQAPTRGTKITDLNI
        QVN  G  VH   Q+ ++ CVGC GPH+TNACP N +    V+    SNTYN  WRNHPNF +G +  NKI KG   VK+ +A KH A ++G  + D  I
Subjt:  QVNVVGGSVHVANQIDDMRCVGCGGPHDTNACPLNTKTVVFVRNDPFSNTYNPDWRNHPNFGFGEERVNKI-KGDMVVKVTVAGKHQAPTRGTKITDLNI

Query:  PIIN-NNPPPLLHPLHPWRTFSANTCRKMMPFCKAKLH
         I+  N PPPL HP   W+ +SANTCR MMPFCK K H
Subjt:  PIIN-NNPPPLLHPLHPWRTFSANTCRKMMPFCKAKLH

XP_038874978.1 putative uncharacterized protein DDB_G0279653 [Benincasa hispida]3.0e-2739.53Show/hide
Query:  MVKACPHNGIPECILMEVFYFGLNKATQQTADVVFVGGMLKSSYNQIKATLDSMASNNEKWDEDDFDNRRGGRGRSDEG-MDKNVVVALQGQMTAMNNLL
        +VK  PH GI  C+LME FY  LN++TQ  AD   VGG +  +Y + K  LD ++ N + W +D +  R   R R+D   +  + +  L  QM A+ +LL
Subjt:  MVKACPHNGIPECILMEVFYFGLNKATQQTADVVFVGGMLKSSYNQIKATLDSMASNNEKWDEDDFDNRRGGRGRSDEG-MDKNVVVALQGQMTAMNNLL

Query:  RSMAISQ--VNVVGGSVHVANQIDDMRCVGCGGPHDTNACPLNTKTVVFVRNDPFSNTYNPDWRNHPNFGFG
        ++MAI+Q  ++      +   Q+  + CV  GG H    CP N ++V  ++N+P+SNTYNP WRNHPNF +G
Subjt:  RSMAISQ--VNVVGGSVHVANQIDDMRCVGCGGPHDTNACPLNTKTVVFVRNDPFSNTYNPDWRNHPNFGFG

TrEMBL top hitse value%identityAlignment
A0A0A0K6F9 Uncharacterized protein1.3e-3361.16Show/hide
Query:  MVKACPHNGIPECILMEVFYFGLNKATQQTADVVFVGGMLKSSYNQIKATLDSMASNNEKWDEDDFDNRRGGRGRSDEGMDKNVVVALQGQMTAMNNLLR
        +VKACP +GIPEC+ MEVFYFGL+K T Q  + +FVGGML+SSYNQIKATLDSM++N+++WD+  F +R   RGR+ EG+DK+VVV LQGQM AMNNLL+
Subjt:  MVKACPHNGIPECILMEVFYFGLNKATQQTADVVFVGGMLKSSYNQIKATLDSMASNNEKWDEDDFDNRRGGRGRSDEGMDKNVVVALQGQMTAMNNLLR

Query:  SMAISQVNVVGGSVHVANQID
        SM +SQVN     +H   Q++
Subjt:  SMAISQVNVVGGSVHVANQID

A0A5D3CC26 Uncharacterized protein1.9e-4356.05Show/hide
Query:  MVKACPHNGIPECILMEVFYFGLNKATQQTADVVFVGGMLKSSYNQIKATLDSMASNNEKWDEDDFDNR------RGGRGRSDEGMDKNVVVALQGQMTA
        M+K CPH+ IPEC+LME FYFGL+K T Q+A++VF GGML+SSYNQIK  LD+MASN+++W ++ F +R      +G RGR ++G+D +++VALQGQ+  
Subjt:  MVKACPHNGIPECILMEVFYFGLNKATQQTADVVFVGGMLKSSYNQIKATLDSMASNNEKWDEDDFDNR------RGGRGRSDEGMDKNVVVALQGQMTA

Query:  MNNLLRSMAISQVNVVGGSVHVANQIDDMRCVGCGGPHDTNACPLNTKTVVFVRNDP
        M N+L+SMA+ QVNVV  SV +  Q+++M CVGC  PH+TNACPLNT+ V +++NDP
Subjt:  MNNLLRSMAISQVNVVGGSVHVANQIDDMRCVGCGGPHDTNACPLNTKTVVFVRNDP

A0A5D3CGY4 Uncharacterized protein5.3e-3051.45Show/hide
Query:  QVNVVGGSVHVANQIDDMRCVGCGGPHDTNACPLNTKTVVFVRNDPFSNTYNPDWRNHPNFGFGEERVNKI-KGDMVVKVTVAGKHQAPTRGTKITDLNI
        QVN  G  VH   Q+ ++ CVGC GPH+TNACP N +    V+    SNTYN  WRNHPNF +G +  NKI KG   VK+ +A KH A ++G  + D  I
Subjt:  QVNVVGGSVHVANQIDDMRCVGCGGPHDTNACPLNTKTVVFVRNDPFSNTYNPDWRNHPNFGFGEERVNKI-KGDMVVKVTVAGKHQAPTRGTKITDLNI

Query:  PIIN-NNPPPLLHPLHPWRTFSANTCRKMMPFCKAKLH
         I+  N PPPL HP   W+ +SANTCR MMPFCK K H
Subjt:  PIIN-NNPPPLLHPLHPWRTFSANTCRKMMPFCKAKLH

A0A5D3CSC7 Uncharacterized protein1.3e-3659.2Show/hide
Query:  SSYNQIKATLDSMASNNEKWDEDDFDNRRGGRGRSDEGMDKNVVVALQGQMTAMNNLLRSMAISQVNVVGGSVHVANQIDDMRCVGCGGPHDTNACPLNT
        SSYNQI  TLDS+A NNE+WD+D FD+ RGGRG+++EG+D+NV+V  QGQMTAMNNLL+ M   QVN    S     Q+D++ C+  G PH  +ACPLN 
Subjt:  SSYNQIKATLDSMASNNEKWDEDDFDNRRGGRGRSDEGMDKNVVVALQGQMTAMNNLLRSMAISQVNVVGGSVHVANQIDDMRCVGCGGPHDTNACPLNT

Query:  KTVVFVRNDPFSNTYNPDWRNHPNF
        + V +V++DP+SNTYNP WRNHPNF
Subjt:  KTVVFVRNDPFSNTYNPDWRNHPNF

A0A5D3D2S0 Uncharacterized protein7.1e-2753.78Show/hide
Query:  MLKSSYNQIKATLDSMASNNEKWDEDDFDNRRGGRGRSDEGMDKNVVVALQGQMTAMNNLLRSMAISQVNVVGGSVHVANQIDDMRCVGCGGPHDTNACP
        ML+SSY QIK TLD++ +N+++  +DD   +   RGR+D GMD+NV+VALQGQ+T M  LL+SMA+SQV+ VG  V    Q+D+MR VGCG PH T+AC 
Subjt:  MLKSSYNQIKATLDSMASNNEKWDEDDFDNRRGGRGRSDEGMDKNVVVALQGQMTAMNNLLRSMAISQVNVVGGSVHVANQIDDMRCVGCGGPHDTNACP

Query:  LNTKTVVFVRNDPFSNTYN
        LN +   +V++ P+SNTYN
Subjt:  LNTKTVVFVRNDPFSNTYN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCAAAGCATGCCCCCACAATGGCATTCCCGAATGCATATTGATGGAGGTTTTCTACTTTGGCTTGAACAAGGCGACACAGCAGACTGCTGATGTTGTGTTTGTGGG
TGGTATGTTGAAAAGCTCCTACAACCAGATCAAGGCGACGCTGGACTCGATGGCCAGCAACAATGAAAAATGGGATGAAGATGATTTCGACAATCGTCGAGGAGGACGAG
GAAGAAGCGACGAAGGTATGGATAAGAACGTCGTGGTGGCATTGCAAGGACAAATGACTGCGATGAACAACCTTCTTAGATCTATGGCAATATCGCAAGTCAATGTCGTA
GGTGGCTCTGTGCACGTGGCAAATCAAATTGATGATATGAGATGTGTGGGATGCGGCGGTCCTCATGACACTAACGCATGCCCACTTAACACAAAAACAGTCGTGTTCGT
AAGGAACGACCCTTTTTCCAACACTTACAACCCTGATTGGAGAAATCATCCTAACTTTGGATTCGGGGAGGAACGGGTCAACAAAATCAAGGGCGACATGGTGGTCAAGG
TGACCGTCGCGGGGAAGCATCAGGCTCCCACGCGAGGTACCAAAATAACTGACCTCAACATTCCCATCATCAACAACAACCCACCACCACTACTCCATCCACTTCATCCA
TGGAGAACCTTCTCCGCGAATACATGCAGAAAAATGATGCCCTTCTGCAAAGCCAAGCTTCATCAATTCGCAATCTGGAAGTACAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTCAAAGCATGCCCCCACAATGGCATTCCCGAATGCATATTGATGGAGGTTTTCTACTTTGGCTTGAACAAGGCGACACAGCAGACTGCTGATGTTGTGTTTGTGGG
TGGTATGTTGAAAAGCTCCTACAACCAGATCAAGGCGACGCTGGACTCGATGGCCAGCAACAATGAAAAATGGGATGAAGATGATTTCGACAATCGTCGAGGAGGACGAG
GAAGAAGCGACGAAGGTATGGATAAGAACGTCGTGGTGGCATTGCAAGGACAAATGACTGCGATGAACAACCTTCTTAGATCTATGGCAATATCGCAAGTCAATGTCGTA
GGTGGCTCTGTGCACGTGGCAAATCAAATTGATGATATGAGATGTGTGGGATGCGGCGGTCCTCATGACACTAACGCATGCCCACTTAACACAAAAACAGTCGTGTTCGT
AAGGAACGACCCTTTTTCCAACACTTACAACCCTGATTGGAGAAATCATCCTAACTTTGGATTCGGGGAGGAACGGGTCAACAAAATCAAGGGCGACATGGTGGTCAAGG
TGACCGTCGCGGGGAAGCATCAGGCTCCCACGCGAGGTACCAAAATAACTGACCTCAACATTCCCATCATCAACAACAACCCACCACCACTACTCCATCCACTTCATCCA
TGGAGAACCTTCTCCGCGAATACATGCAGAAAAATGATGCCCTTCTGCAAAGCCAAGCTTCATCAATTCGCAATCTGGAAGTACAATTAG
Protein sequenceShow/hide protein sequence
MVKACPHNGIPECILMEVFYFGLNKATQQTADVVFVGGMLKSSYNQIKATLDSMASNNEKWDEDDFDNRRGGRGRSDEGMDKNVVVALQGQMTAMNNLLRSMAISQVNVV
GGSVHVANQIDDMRCVGCGGPHDTNACPLNTKTVVFVRNDPFSNTYNPDWRNHPNFGFGEERVNKIKGDMVVKVTVAGKHQAPTRGTKITDLNIPIINNNPPPLLHPLHP
WRTFSANTCRKMMPFCKAKLHQFAIWKYN