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PI0002419 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002419
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description50S ribosomal protein L18
Genome locationchr11:5539482..5542658
RNA-Seq ExpressionPI0002419
SyntenyPI0002419
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK06187.1 50S ribosomal protein L18 [Cucumis melo var. makuwa]1.8e-5793.02Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGF+NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNV-DEASRSSYQ
        AIVNSLKNNGVKLILDNNV D+A++S+YQ
Subjt:  AIVNSLKNNGVKLILDNNV-DEASRSSYQ

XP_022943852.1 uncharacterized protein LOC111448460 [Cucurbita moschata]1.3e-5895.31Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH DINKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNVDEASRSSYQ
        AIVNSLKNNGVKLILDNN D+ASR SY+
Subjt:  AIVNSLKNNGVKLILDNNVDEASRSSYQ

XP_022985582.1 uncharacterized protein LOC111483610 [Cucurbita maxima]6.3e-5894.53Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH DINKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNVDEASRSSYQ
        AIVNSLKNNGVKLILDNN D+A R SY+
Subjt:  AIVNSLKNNGVKLILDNNVDEASRSSYQ

XP_023511782.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo]1.7e-5894.53Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH D+NKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNVDEASRSSYQ
        AIVNSLKNNGVKLILDNN D+ASR SY+
Subjt:  AIVNSLKNNGVKLILDNNVDEASRSSYQ

XP_038901007.1 uncharacterized protein LOC120088052 [Benincasa hispida]8.0e-6197.66Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHAD+NKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNVDEASRSSYQ
        AIVN+LKNNGVKLILDNNVD+ASRSSYQ
Subjt:  AIVNSLKNNGVKLILDNNVDEASRSSYQ

TrEMBL top hitse value%identityAlignment
A0A1S4E442 uncharacterized protein LOC1035015013.4e-5792.25Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGF+NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNV-DEASRSSYQ
        AIVNSLKNNGVKLIL+NNV D+A++S+YQ
Subjt:  AIVNSLKNNGVKLILDNNV-DEASRSSYQ

A0A5A7SM55 50S ribosomal protein L183.4e-5792.25Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGF+NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNV-DEASRSSYQ
        AIVNSLKNNGVKLIL+NNV D+A++S+YQ
Subjt:  AIVNSLKNNGVKLILDNNV-DEASRSSYQ

A0A5D3C2Z2 50S ribosomal protein L188.9e-5893.02Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGF+NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNV-DEASRSSYQ
        AIVNSLKNNGVKLILDNNV D+A++S+YQ
Subjt:  AIVNSLKNNGVKLILDNNV-DEASRSSYQ

A0A6J1FXG0 uncharacterized protein LOC1114484606.2e-5995.31Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH DINKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNVDEASRSSYQ
        AIVNSLKNNGVKLILDNN D+ASR SY+
Subjt:  AIVNSLKNNGVKLILDNNVDEASRSSYQ

A0A6J1JBQ5 uncharacterized protein LOC1114836103.1e-5894.53Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH DINKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNVDEASRSSYQ
        AIVNSLKNNGVKLILDNN D+A R SY+
Subjt:  AIVNSLKNNGVKLILDNNVDEASRSSYQ

SwissProt top hitse value%identityAlignment
A1KRI9 50S ribosomal protein L188.4e-0529.63Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV
        LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV

Query:  NSLKNNGV
         + + NG+
Subjt:  NSLKNNGV

A9M3V0 50S ribosomal protein L188.4e-0529.63Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV
        LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV

Query:  NSLKNNGV
         + + NG+
Subjt:  NSLKNNGV

Q5F5U3 50S ribosomal protein L188.4e-0529.63Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV
        LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV

Query:  NSLKNNGV
         + + NG+
Subjt:  NSLKNNGV

Q7DDT0 50S ribosomal protein L188.4e-0529.63Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV
        LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV

Query:  NSLKNNGV
         + + NG+
Subjt:  NSLKNNGV

Q9JQQ6 50S ribosomal protein L188.4e-0529.63Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV
        LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV

Query:  NSLKNNGV
         + + NG+
Subjt:  NSLKNNGV

Arabidopsis top hitse value%identityAlignment
AT3G45020.1 Ribosomal L18p/L5e family protein8.5e-5381.82Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYVLRLF+S+KYITANVVDRNNGRIV TASTVEH+IK SLECGR+CNAKAAA+VGEVLAMRLKV+GL+ GQGRGIHAD+ KEIEKKGFK+RTK+W
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNVDE
        A++NSL+NNGV LILD++ D+
Subjt:  AIVNSLKNNGVKLILDNNVDE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGTATTAAAGCGCTATGTGCTACGATTATTCATATCTTTGAAGTACATAACAGCTAATGTGGTAGATAGAAATAATGGACGGATTGTCGCAACTGCATCCACAGT
CGAACACTCCATCAAGGGCTCACTTGAATGTGGCCGGTCTTGTAATGCTAAGGCAGCAGCCGTTGTTGGAGAGGTGTTAGCTATGCGACTCAAAGTCGATGGTCTCGAAC
AGGGGCAAGGAAGAGGCATTCACGCAGACATAAACAAGGAAATCGAGAAGAAAGGCTTTAAAAACCGCACAAAAATCTGGGCGATAGTGAACTCGCTCAAGAATAACGGA
GTTAAACTTATACTCGACAACAATGTCGACGAGGCATCTCGGTCGAGCTATCAATAA
mRNA sequenceShow/hide mRNA sequence
CATCCCTTCCGCTTCCTTTTCAAGATAAGCTTAGTTCATTGGGAATTTGGCTGTTGTTACATGATCATTGTGGGTTCTTGGTAATGTCTTTCTTGGAGCTCATTGATCGA
TAATTCAAGGTTCAAAATCTGTAACTACTCAGGTCTTTTGAGAAAATTGCTGCTGTCAATGACAGTATTAAAGCGCTATGTGCTACGATTATTCATATCTTTGAAGTACA
TAACAGCTAATGTGGTAGATAGAAATAATGGACGGATTGTCGCAACTGCATCCACAGTCGAACACTCCATCAAGGGCTCACTTGAATGTGGCCGGTCTTGTAATGCTAAG
GCAGCAGCCGTTGTTGGAGAGGTGTTAGCTATGCGACTCAAAGTCGATGGTCTCGAACAGGGGCAAGGAAGAGGCATTCACGCAGACATAAACAAGGAAATCGAGAAGAA
AGGCTTTAAAAACCGCACAAAAATCTGGGCGATAGTGAACTCGCTCAAGAATAACGGAGTTAAACTTATACTCGACAACAATGTCGACGAGGCATCTCGGTCGAGCTATC
AATAAGCTCCTGAGGCAATCCCTGGATGACTAGAGCTCAACC
Protein sequenceShow/hide protein sequence
MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIVNSLKNNG
VKLILDNNVDEASRSSYQ