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PI0002426 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002426
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Genome locationchr12:17237511..17238266
RNA-Seq ExpressionPI0002426
SyntenyPI0002426
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054434.1 hypothetical protein E6C27_scaffold24G001880 [Cucumis melo var. makuwa]2.1e-0454Show/hide
Query:  RHDQQFRTQMEYTYAAIVQRVPAPIIPPELKAPFPPLTRL-GDPAPRQDN
        R D++F+  MEYT+A  VQRVP P+IP EL+ PFPP+ +  G P PRQ++
Subjt:  RHDQQFRTQMEYTYAAIVQRVPAPIIPPELKAPFPPLTRL-GDPAPRQDN

KAA0064129.1 uncharacterized protein E6C27_scaffold548G00430 [Cucumis melo var. makuwa]1.9e-1031.03Show/hide
Query:  AGETASS-AHTTNAQPTTAPGEDEDLGDLLGSL---PVFGYFDQVLAHHADQATQLQSLKTSIDQLQRPTTENLVTPVSQEEISALRSELKELSANNAQL
        A ET+SS +   + + +    E +D+ D +GS      F YF+QVL      + +  ++ T ++++Q   ++       ++ ++  + ++ ++ AN  QL
Subjt:  AGETASS-AHTTNAQPTTAPGEDEDLGDLLGSL---PVFGYFDQVLAHHADQATQLQSLKTSIDQLQRPTTENLVTPVSQEEISALRSELKELSANNAQL

Query:  STAVSNLTSLVIAQSEMMRQIAARHDQQFRTQMEYTYAAIVQRVPAPIIPPELKAPFPPL--TRLGDPAPRQDN
        S+ VSNLT +VI   EM  ++  + D+QF+  +EYT+A   QR+P+P I PE+++ +P +    LG P P QDN
Subjt:  STAVSNLTSLVIAQSEMMRQIAARHDQQFRTQMEYTYAAIVQRVPAPIIPPELKAPFPPL--TRLGDPAPRQDN

TYK14602.1 hypothetical protein E5676_scaffold552G001110 [Cucumis melo var. makuwa]4.1e-0550Show/hide
Query:  EMMRQIAARHDQQFRTQMEYTYAAIVQRVPAPIIPPELKAPFPPLTRL-GDPAPRQDN
        EM  ++  R D++F+  MEYT+A  VQRVP P+IP EL+ PFPP+ +  G P PRQ++
Subjt:  EMMRQIAARHDQQFRTQMEYTYAAIVQRVPAPIIPPELKAPFPPLTRL-GDPAPRQDN

TYK28611.1 hypothetical protein E5676_scaffold2030G00280 [Cucumis melo var. makuwa]1.9e-1031.03Show/hide
Query:  AGETASS-AHTTNAQPTTAPGEDEDLGDLLGSL---PVFGYFDQVLAHHADQATQLQSLKTSIDQLQRPTTENLVTPVSQEEISALRSELKELSANNAQL
        A ET+SS +   + + +    E +D+ D +GS      F YF+QVL      + +  ++ T ++++Q   ++       ++ ++  + ++ ++ AN  QL
Subjt:  AGETASS-AHTTNAQPTTAPGEDEDLGDLLGSL---PVFGYFDQVLAHHADQATQLQSLKTSIDQLQRPTTENLVTPVSQEEISALRSELKELSANNAQL

Query:  STAVSNLTSLVIAQSEMMRQIAARHDQQFRTQMEYTYAAIVQRVPAPIIPPELKAPFPPL--TRLGDPAPRQDN
        S+ VSNLT +VI   EM  ++  + D+QF+  +EYT+A   QR+P+P I PE+++ +P +    LG P P QDN
Subjt:  STAVSNLTSLVIAQSEMMRQIAARHDQQFRTQMEYTYAAIVQRVPAPIIPPELKAPFPPL--TRLGDPAPRQDN

TrEMBL top hitse value%identityAlignment
A0A5A7UH00 Uncharacterized protein9.9e-0554Show/hide
Query:  RHDQQFRTQMEYTYAAIVQRVPAPIIPPELKAPFPPLTRL-GDPAPRQDN
        R D++F+  MEYT+A  VQRVP P+IP EL+ PFPP+ +  G P PRQ++
Subjt:  RHDQQFRTQMEYTYAAIVQRVPAPIIPPELKAPFPPLTRL-GDPAPRQDN

A0A5A7VF20 Uncharacterized protein9.3e-1131.03Show/hide
Query:  AGETASS-AHTTNAQPTTAPGEDEDLGDLLGSL---PVFGYFDQVLAHHADQATQLQSLKTSIDQLQRPTTENLVTPVSQEEISALRSELKELSANNAQL
        A ET+SS +   + + +    E +D+ D +GS      F YF+QVL      + +  ++ T ++++Q   ++       ++ ++  + ++ ++ AN  QL
Subjt:  AGETASS-AHTTNAQPTTAPGEDEDLGDLLGSL---PVFGYFDQVLAHHADQATQLQSLKTSIDQLQRPTTENLVTPVSQEEISALRSELKELSANNAQL

Query:  STAVSNLTSLVIAQSEMMRQIAARHDQQFRTQMEYTYAAIVQRVPAPIIPPELKAPFPPL--TRLGDPAPRQDN
        S+ VSNLT +VI   EM  ++  + D+QF+  +EYT+A   QR+P+P I PE+++ +P +    LG P P QDN
Subjt:  STAVSNLTSLVIAQSEMMRQIAARHDQQFRTQMEYTYAAIVQRVPAPIIPPELKAPFPPL--TRLGDPAPRQDN

A0A5D3CKB6 Retrovirus-related Pol polyprotein from transposon 17.64.9e-0440.7Show/hide
Query:  ISALRSELKELSANNAQLSTAVSNLTSLVIAQSEMMRQIAARHDQQFRTQMEYTYAAIVQRVPAPIIPPELKAPFPPLTRLGDPAP
        I ++ + LKE+   N  +   +++L +        +  IA RHD+QF TQMEYT+A  VQ V  P+I PEL AP PP+ +L +P P
Subjt:  ISALRSELKELSANNAQLSTAVSNLTSLVIAQSEMMRQIAARHDQQFRTQMEYTYAAIVQRVPAPIIPPELKAPFPPLTRLGDPAP

A0A5D3CT45 Uncharacterized protein2.0e-0550Show/hide
Query:  EMMRQIAARHDQQFRTQMEYTYAAIVQRVPAPIIPPELKAPFPPLTRL-GDPAPRQDN
        EM  ++  R D++F+  MEYT+A  VQRVP P+IP EL+ PFPP+ +  G P PRQ++
Subjt:  EMMRQIAARHDQQFRTQMEYTYAAIVQRVPAPIIPPELKAPFPPLTRL-GDPAPRQDN

A0A5D3DYE2 Uncharacterized protein9.3e-1131.03Show/hide
Query:  AGETASS-AHTTNAQPTTAPGEDEDLGDLLGSL---PVFGYFDQVLAHHADQATQLQSLKTSIDQLQRPTTENLVTPVSQEEISALRSELKELSANNAQL
        A ET+SS +   + + +    E +D+ D +GS      F YF+QVL      + +  ++ T ++++Q   ++       ++ ++  + ++ ++ AN  QL
Subjt:  AGETASS-AHTTNAQPTTAPGEDEDLGDLLGSL---PVFGYFDQVLAHHADQATQLQSLKTSIDQLQRPTTENLVTPVSQEEISALRSELKELSANNAQL

Query:  STAVSNLTSLVIAQSEMMRQIAARHDQQFRTQMEYTYAAIVQRVPAPIIPPELKAPFPPL--TRLGDPAPRQDN
        S+ VSNLT +VI   EM  ++  + D+QF+  +EYT+A   QR+P+P I PE+++ +P +    LG P P QDN
Subjt:  STAVSNLTSLVIAQSEMMRQIAARHDQQFRTQMEYTYAAIVQRVPAPIIPPELKAPFPPL--TRLGDPAPRQDN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCTTTCCAATCTCCTTAATGACCCACCCATGGCCGCCACTGAAGTCGCTGAGGTGCCTCCACCCATCATCCATCTGGTAGACCCACCCGTGCGAACCTCTCCCAT
TCTCATTCTTTCAAAAGAGGATGCCAACCCGAAAATCAGGGTCTCGCCACCACCACCACCGCCTGTTTTGGATACAGTTGACCATGTTGATGACCCACACATTAAGGACC
CAACACCTATCCTTAATGATGCTGGTGAGACAGCTTCTTCGGCGCATACCACCAACGCTCAACCTACTACCGCGCCTGGAGAAGATGAAGATTTGGGCGATCTATTAGGA
TCGCTTCCCGTCTTTGGCTATTTTGATCAAGTCCTTGCTCACCATGCTGATCAGGCGACGCAACTCCAATCCTTGAAGACATCCATTGATCAGTTGCAACGCCCTACCAC
CGAAAACCTTGTGACGCCCGTCTCTCAAGAAGAAATCAGTGCCCTGAGAAGCGAGTTGAAGGAACTTTCGGCGAACAATGCCCAACTTTCCACCGCTGTATCCAACCTCA
CCTCCCTAGTCATCGCGCAATCCGAAATGATGCGGCAAATAGCTGCGCGGCATGATCAGCAGTTTCGCACGCAAATGGAATATACCTACGCAGCCATTGTTCAACGCGTG
CCTGCACCAATCATCCCGCCAGAACTCAAAGCACCCTTTCCGCCACTCACGCGTCTTGGCGATCCTGCTCCCCGCCAAGATAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCTTTCCAATCTCCTTAATGACCCACCCATGGCCGCCACTGAAGTCGCTGAGGTGCCTCCACCCATCATCCATCTGGTAGACCCACCCGTGCGAACCTCTCCCAT
TCTCATTCTTTCAAAAGAGGATGCCAACCCGAAAATCAGGGTCTCGCCACCACCACCACCGCCTGTTTTGGATACAGTTGACCATGTTGATGACCCACACATTAAGGACC
CAACACCTATCCTTAATGATGCTGGTGAGACAGCTTCTTCGGCGCATACCACCAACGCTCAACCTACTACCGCGCCTGGAGAAGATGAAGATTTGGGCGATCTATTAGGA
TCGCTTCCCGTCTTTGGCTATTTTGATCAAGTCCTTGCTCACCATGCTGATCAGGCGACGCAACTCCAATCCTTGAAGACATCCATTGATCAGTTGCAACGCCCTACCAC
CGAAAACCTTGTGACGCCCGTCTCTCAAGAAGAAATCAGTGCCCTGAGAAGCGAGTTGAAGGAACTTTCGGCGAACAATGCCCAACTTTCCACCGCTGTATCCAACCTCA
CCTCCCTAGTCATCGCGCAATCCGAAATGATGCGGCAAATAGCTGCGCGGCATGATCAGCAGTTTCGCACGCAAATGGAATATACCTACGCAGCCATTGTTCAACGCGTG
CCTGCACCAATCATCCCGCCAGAACTCAAAGCACCCTTTCCGCCACTCACGCGTCTTGGCGATCCTGCTCCCCGCCAAGATAATTAA
Protein sequenceShow/hide protein sequence
MELSNLLNDPPMAATEVAEVPPPIIHLVDPPVRTSPILILSKEDANPKIRVSPPPPPPVLDTVDHVDDPHIKDPTPILNDAGETASSAHTTNAQPTTAPGEDEDLGDLLG
SLPVFGYFDQVLAHHADQATQLQSLKTSIDQLQRPTTENLVTPVSQEEISALRSELKELSANNAQLSTAVSNLTSLVIAQSEMMRQIAARHDQQFRTQMEYTYAAIVQRV
PAPIIPPELKAPFPPLTRLGDPAPRQDN