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PI0002456 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002456
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr08:1855272..1856580
RNA-Seq ExpressionPI0002456
SyntenyPI0002456
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051224.1 uncharacterized protein E6C27_scaffold1250G00280 [Cucumis melo var. makuwa]4.9e-0743.43Show/hide
Query:  MAANAQQFRTRDRSPLSTTSSHEVSELRSKLDELTTFGKYVYLAHGQQPRELVVEGGRQYNQNHWEGQVNSQGGHRCVNSSRSMEDEVKNLWGTVLQLK
        + ANAQQF TRDR  LSTT S EV+E+RS+L ELTT  K V++AHG +P++ V                           S+S+ED+V +L  T+LQLK
Subjt:  MAANAQQFRTRDRSPLSTTSSHEVSELRSKLDELTTFGKYVYLAHGQQPRELVVEGGRQYNQNHWEGQVNSQGGHRCVNSSRSMEDEVKNLWGTVLQLK

TYK18879.1 uncharacterized protein E5676_scaffold204G00840 [Cucumis melo var. makuwa]4.9e-0743.43Show/hide
Query:  MAANAQQFRTRDRSPLSTTSSHEVSELRSKLDELTTFGKYVYLAHGQQPRELVVEGGRQYNQNHWEGQVNSQGGHRCVNSSRSMEDEVKNLWGTVLQLK
        + ANAQQF TRDR  LSTT S EV+E+RS+L ELTT  K V++AHG +P++ V                           S+S+ED+V +L  T+LQLK
Subjt:  MAANAQQFRTRDRSPLSTTSSHEVSELRSKLDELTTFGKYVYLAHGQQPRELVVEGGRQYNQNHWEGQVNSQGGHRCVNSSRSMEDEVKNLWGTVLQLK

XP_022156327.1 uncharacterized protein LOC111023248 [Momordica charantia]5.5e-0629.37Show/hide
Query:  MAANAQQFRTRDRSPLSTTSSHEVSELRSKLDELTTFGKYVYLAHGQQPRELVVEGG---------------------------RQYN--QNH----WEG
        MA N+QQF  R     S T  +EVSEL+S++ +LTT  + +  A G++PRE+    G                           R Y+   NH    W  
Subjt:  MAANAQQFRTRDRSPLSTTSSHEVSELRSKLDELTTFGKYVYLAHGQQPRELVVEGG---------------------------RQYN--QNH----WEG

Query:  QVNSQGGH-------------RCVNSSRSMEDEVKNLWGTVLQLKQNQKTTLSHMQSMITQLANAVGRLD-MKYGKLPSKLE--PDVRNIDVVSTFCSDE
          N   G+             +  NS  S+E+ VKNL  + LQ +Q  +  + ++ + ITQLA ++ RL+    G LPS++E  P    ++ +S      
Subjt:  QVNSQGGH-------------RCVNSSRSMEDEVKNLWGTVLQLKQNQKTTLSHMQSMITQLANAVGRLD-MKYGKLPSKLE--PDVRNIDVVSTFCSDE

Query:  TFDPPV-------DELVPEPVATPWRPR--IRFNPPIGSLFCEVSSVPFPSR
          D P+       +EL  E   T       I F+PP+ SL    S  PFPSR
Subjt:  TFDPPV-------DELVPEPVATPWRPR--IRFNPPIGSLFCEVSSVPFPSR

XP_027121945.1 uncharacterized protein LOC113738867 [Coffea arabica]2.5e-0628.75Show/hide
Query:  MAANAQQFRTRDRSPLSTTSSHEVSELRSKLDELTTFGKYVYLAHGQQPRELVVEGGRQYNQNHWEGQVNSQGGHRCVNSSRSMEDEVKNLWGTVLQLKQ
        MA N+QQF  R+ +P    +  E S ++ KL ELT+  +       + P              H   Q  SQ      NS  S+ED VK+L  T  QL Q
Subjt:  MAANAQQFRTRDRSPLSTTSSHEVSELRSKLDELTTFGKYVYLAHGQQPRELVVEGGRQYNQNHWEGQVNSQGGHRCVNSSRSMEDEVKNLWGTVLQLKQ

Query:  NQKTTLSHMQSMITQLANAVGRLDMK-YGKLPSKLEPDVRNIDVVSTFCSDETFDPPV-------DELVPEPVATPWR----PRIRFNPPIGSLFCEVSS
          K      ++ I+QLA A+ RL+   YGKLPS+ E + +N+  ++     E   P V       DE + + +    R    P++ F  P+       S+
Subjt:  NQKTTLSHMQSMITQLANAVGRLDMK-YGKLPSKLEPDVRNIDVVSTFCSDETFDPPV-------DELVPEPVATPWR----PRIRFNPPIGSLFCEVSS

Query:  VP-FPSRLAKGVALKEEHKKKSLPRSP--RIPFFKTVKVV
        +P FP RL K   +++E +   + R     IP    +K +
Subjt:  VP-FPSRLAKGVALKEEHKKKSLPRSP--RIPFFKTVKVV

XP_027152351.1 uncharacterized protein LOC113752439 [Coffea eugenioides]5.1e-0424.16Show/hide
Query:  AANAQQFRTRDRSPLSTTSSHEVSELRSKLDELTTFGKYVYLAHGQQPRE----------------LVVEGGRQYNQ-------NHWEGQVNS-------
        A N+QQF  R+ +P    +  E + ++ +L ELT+  + + + +  Q +                 L  +G  Q +Q       +  E  V S       
Subjt:  AANAQQFRTRDRSPLSTTSSHEVSELRSKLDELTTFGKYVYLAHGQQPRE----------------LVVEGGRQYNQ-------NHWEGQVNS-------

Query:  --QGGHRCVNSSRSMEDEVKNLWGTVLQLKQNQKTTLSHMQSMITQLANAVGRLDMK-YGKLPSKLEPDVRNIDVVSTFCSDETFDPPVDEL--------
          Q     V ++  ++ E ++L  +  Q +Q+ K  +  M++ ++Q+A A+ RL+   YGKLPS+ E + +N+  ++  C  E   P V +L        
Subjt:  --QGGHRCVNSSRSMEDEVKNLWGTVLQLKQNQKTTLSHMQSMITQLANAVGRLDMK-YGKLPSKLEPDVRNIDVVSTFCSDETFDPPVDEL--------

Query:  ---VPEPVATPWRPRIRFNPPIGSLFCEVSSVPFPSRLAKGVALKEEHKKKSLPRSPRIPFFKTVKVVI
           + E       P +   P   SL  + +  PFP RLAK    K+  K+K +     +  FK V++ I
Subjt:  ---VPEPVATPWRPRIRFNPPIGSLFCEVSSVPFPSRLAKGVALKEEHKKKSLPRSPRIPFFKTVKVVI

TrEMBL top hitse value%identityAlignment
A0A5A7U7D3 Retrotrans_gag domain-containing protein2.4e-0743.43Show/hide
Query:  MAANAQQFRTRDRSPLSTTSSHEVSELRSKLDELTTFGKYVYLAHGQQPRELVVEGGRQYNQNHWEGQVNSQGGHRCVNSSRSMEDEVKNLWGTVLQLK
        + ANAQQF TRDR  LSTT S EV+E+RS+L ELTT  K V++AHG +P++ V                           S+S+ED+V +L  T+LQLK
Subjt:  MAANAQQFRTRDRSPLSTTSSHEVSELRSKLDELTTFGKYVYLAHGQQPRELVVEGGRQYNQNHWEGQVNSQGGHRCVNSSRSMEDEVKNLWGTVLQLK

A0A5D3D5P5 Uncharacterized protein2.4e-0743.43Show/hide
Query:  MAANAQQFRTRDRSPLSTTSSHEVSELRSKLDELTTFGKYVYLAHGQQPRELVVEGGRQYNQNHWEGQVNSQGGHRCVNSSRSMEDEVKNLWGTVLQLK
        + ANAQQF TRDR  LSTT S EV+E+RS+L ELTT  K V++AHG +P++ V                           S+S+ED+V +L  T+LQLK
Subjt:  MAANAQQFRTRDRSPLSTTSSHEVSELRSKLDELTTFGKYVYLAHGQQPRELVVEGGRQYNQNHWEGQVNSQGGHRCVNSSRSMEDEVKNLWGTVLQLK

A0A6J1DRS5 uncharacterized protein LOC1110232482.6e-0629.37Show/hide
Query:  MAANAQQFRTRDRSPLSTTSSHEVSELRSKLDELTTFGKYVYLAHGQQPRELVVEGG---------------------------RQYN--QNH----WEG
        MA N+QQF  R     S T  +EVSEL+S++ +LTT  + +  A G++PRE+    G                           R Y+   NH    W  
Subjt:  MAANAQQFRTRDRSPLSTTSSHEVSELRSKLDELTTFGKYVYLAHGQQPRELVVEGG---------------------------RQYN--QNH----WEG

Query:  QVNSQGGH-------------RCVNSSRSMEDEVKNLWGTVLQLKQNQKTTLSHMQSMITQLANAVGRLD-MKYGKLPSKLE--PDVRNIDVVSTFCSDE
          N   G+             +  NS  S+E+ VKNL  + LQ +Q  +  + ++ + ITQLA ++ RL+    G LPS++E  P    ++ +S      
Subjt:  QVNSQGGH-------------RCVNSSRSMEDEVKNLWGTVLQLKQNQKTTLSHMQSMITQLANAVGRLD-MKYGKLPSKLE--PDVRNIDVVSTFCSDE

Query:  TFDPPV-------DELVPEPVATPWRPR--IRFNPPIGSLFCEVSSVPFPSR
          D P+       +EL  E   T       I F+PP+ SL    S  PFPSR
Subjt:  TFDPPV-------DELVPEPVATPWRPR--IRFNPPIGSLFCEVSSVPFPSR

A0A6P6X2Y5 uncharacterized protein LOC1137388671.2e-0628.75Show/hide
Query:  MAANAQQFRTRDRSPLSTTSSHEVSELRSKLDELTTFGKYVYLAHGQQPRELVVEGGRQYNQNHWEGQVNSQGGHRCVNSSRSMEDEVKNLWGTVLQLKQ
        MA N+QQF  R+ +P    +  E S ++ KL ELT+  +       + P              H   Q  SQ      NS  S+ED VK+L  T  QL Q
Subjt:  MAANAQQFRTRDRSPLSTTSSHEVSELRSKLDELTTFGKYVYLAHGQQPRELVVEGGRQYNQNHWEGQVNSQGGHRCVNSSRSMEDEVKNLWGTVLQLKQ

Query:  NQKTTLSHMQSMITQLANAVGRLDMK-YGKLPSKLEPDVRNIDVVSTFCSDETFDPPV-------DELVPEPVATPWR----PRIRFNPPIGSLFCEVSS
          K      ++ I+QLA A+ RL+   YGKLPS+ E + +N+  ++     E   P V       DE + + +    R    P++ F  P+       S+
Subjt:  NQKTTLSHMQSMITQLANAVGRLDMK-YGKLPSKLEPDVRNIDVVSTFCSDETFDPPV-------DELVPEPVATPWR----PRIRFNPPIGSLFCEVSS

Query:  VP-FPSRLAKGVALKEEHKKKSLPRSP--RIPFFKTVKVV
        +P FP RL K   +++E +   + R     IP    +K +
Subjt:  VP-FPSRLAKGVALKEEHKKKSLPRSP--RIPFFKTVKVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCTAATGCCCAGCAGTTCAGGACTAGAGATCGAAGTCCTTTGTCCACCACATCTTCACATGAGGTAAGTGAGCTTAGATCTAAACTTGATGAATTGACTACTTT
TGGAAAATATGTATACCTTGCACATGGGCAGCAGCCTCGGGAGCTTGTTGTTGAGGGAGGTAGACAGTACAATCAGAACCACTGGGAAGGCCAAGTAAACAGTCAGGGAG
GCCATAGATGTGTCAACTCTAGTAGATCCATGGAGGATGAGGTGAAAAACCTTTGGGGCACTGTTCTGCAGCTGAAGCAGAACCAGAAGACTACCCTATCCCACATGCAG
AGTATGATCACGCAGTTAGCCAATGCAGTTGGGAGACTTGACATGAAATATGGGAAACTGCCTTCCAAACTAGAGCCTGATGTACGGAACATTGACGTAGTCTCTACATT
TTGTTCTGACGAGACTTTCGATCCACCTGTTGATGAGCTTGTTCCTGAACCTGTTGCTACTCCTTGGAGGCCTAGAATACGATTTAATCCTCCTATAGGATCACTTTTCT
GTGAAGTCTCTTCTGTTCCTTTTCCTAGCAGGCTGGCAAAGGGAGTGGCACTGAAGGAAGAGCATAAAAAGAAGAGTCTCCCACGATCTCCAAGGATACCCTTTTTTAAG
ACAGTGAAAGTTGTCATCGATGTGGATAAAGGGTCCTTTGAAGTTAAACAAGGATGGAATTTCAAGACTTTTGTTATGTTTAGTGATGATTCTTCTGCTAATCATGATAG
TAGTCCACCTCCTAAGTTGGGGGTGGAGGATGTTAACTCCAATTCTTTTGGAGAGTATGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCTAATGCCCAGCAGTTCAGGACTAGAGATCGAAGTCCTTTGTCCACCACATCTTCACATGAGGTAAGTGAGCTTAGATCTAAACTTGATGAATTGACTACTTT
TGGAAAATATGTATACCTTGCACATGGGCAGCAGCCTCGGGAGCTTGTTGTTGAGGGAGGTAGACAGTACAATCAGAACCACTGGGAAGGCCAAGTAAACAGTCAGGGAG
GCCATAGATGTGTCAACTCTAGTAGATCCATGGAGGATGAGGTGAAAAACCTTTGGGGCACTGTTCTGCAGCTGAAGCAGAACCAGAAGACTACCCTATCCCACATGCAG
AGTATGATCACGCAGTTAGCCAATGCAGTTGGGAGACTTGACATGAAATATGGGAAACTGCCTTCCAAACTAGAGCCTGATGTACGGAACATTGACGTAGTCTCTACATT
TTGTTCTGACGAGACTTTCGATCCACCTGTTGATGAGCTTGTTCCTGAACCTGTTGCTACTCCTTGGAGGCCTAGAATACGATTTAATCCTCCTATAGGATCACTTTTCT
GTGAAGTCTCTTCTGTTCCTTTTCCTAGCAGGCTGGCAAAGGGAGTGGCACTGAAGGAAGAGCATAAAAAGAAGAGTCTCCCACGATCTCCAAGGATACCCTTTTTTAAG
ACAGTGAAAGTTGTCATCGATGTGGATAAAGGGTCCTTTGAAGTTAAACAAGGATGGAATTTCAAGACTTTTGTTATGTTTAGTGATGATTCTTCTGCTAATCATGATAG
TAGTCCACCTCCTAAGTTGGGGGTGGAGGATGTTAACTCCAATTCTTTTGGAGAGTATGGTTGA
Protein sequenceShow/hide protein sequence
MAANAQQFRTRDRSPLSTTSSHEVSELRSKLDELTTFGKYVYLAHGQQPRELVVEGGRQYNQNHWEGQVNSQGGHRCVNSSRSMEDEVKNLWGTVLQLKQNQKTTLSHMQ
SMITQLANAVGRLDMKYGKLPSKLEPDVRNIDVVSTFCSDETFDPPVDELVPEPVATPWRPRIRFNPPIGSLFCEVSSVPFPSRLAKGVALKEEHKKKSLPRSPRIPFFK
TVKVVIDVDKGSFEVKQGWNFKTFVMFSDDSSANHDSSPPPKLGVEDVNSNSFGEYG