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PI0002540 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002540
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr02:15558607..15560048
RNA-Seq ExpressionPI0002540
SyntenyPI0002540
Gene Ontology termsGO:0008152 - metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032583.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-5540.11Show/hide
Query:  EISDTVRFLEGRIEEVSEKADAIDAVTGRLDRLPIKELLTKVDTLEAKAT---RINYERGGSSTGSIAHVEERIGELDSSQKSIVEMINDMSEDFRAALD
        E+ D++R+LE R+EE+SEK + IDAV GR++  PI+EL+T+VD LE        +NYERG SSTGS+AH+EER+ ELDSSQK+++EMIN MSEDFRA LD
Subjt:  EISDTVRFLEGRIEEVSEKADAIDAVTGRLDRLPIKELLTKVDTLEAKAT---RINYERGGSSTGSIAHVEERIGELDSSQKSIVEMINDMSEDFRAALD

Query:  IVRNEIAD--------------------------------------------------------------------------------------------
        +VRNEIAD                                                                                            
Subjt:  IVRNEIAD--------------------------------------------------------------------------------------------

Query:  ------------------------------------------------------RVQELSSAYAAAERLFDLSSDSQDARRLPSYSFGGNKNNRASFPKA
                                                              RVQ+L+SAYAAAERLFDLS+DSQD RR PS S GG++NNR S PK 
Subjt:  ------------------------------------------------------RVQELSSAYAAAERLFDLSSDSQDARRLPSYSFGGNKNNRASFPKA

Query:  GGGDRGSNGDHRPFQSNTGNTGRGQNPQNSHSRPFAYFICKGPHMARECLNRIAFNAFQAALTSDSDDK
         GGDR  NGD R  QSNTGN+ RG + QN  +RP + FICKGPHMAREC N+ AFNAFQA+LTSDSD++
Subjt:  GGGDRGSNGDHRPFQSNTGNTGRGQNPQNSHSRPFAYFICKGPHMARECLNRIAFNAFQAALTSDSDDK

KAA0060348.1 reverse transcriptase [Cucumis melo var. makuwa]7.5e-5844.79Show/hide
Query:  EISDTVRFLEGRIEEVSEKADAIDAVTGRLDRLPIKELLTKVDTLEAK---ATRINYERGGSSTGSIAHVEERIGELDSSQKSIVEMINDMSEDFRAALD
        E+ D++R+LE  ++E+SEK + IDAV GR++  PI+EL+T+VD LE        +NYERG SST S+AH+EER+ ELDSSQK+++EMIN MSEDFRA L+
Subjt:  EISDTVRFLEGRIEEVSEKADAIDAVTGRLDRLPIKELLTKVDTLEAK---ATRINYERGGSSTGSIAHVEERIGELDSSQKSIVEMINDMSEDFRAALD

Query:  IVRNEIAD--------------------------------------------------------------------------------------------
        +VRNEIAD                                                                                            
Subjt:  IVRNEIAD--------------------------------------------------------------------------------------------

Query:  --RVQELSSAYAAAERLFDLSSDSQDARRLPSYSFGGNKNNRASFPKAGGGDRGSNGDHRPFQSNTGNTGRGQNPQNSHSRPFAYFICKGPHMARECLNR
          RVQ+L+SAYAAAERLFDLS+D QD RR PS S GG++NNR S PK  GGDR  NGD R  QSNTGN+ RG + QN  +RP + FICKGPHMAREC N+
Subjt:  --RVQELSSAYAAAERLFDLSSDSQDARRLPSYSFGGNKNNRASFPKAGGGDRGSNGDHRPFQSNTGNTGRGQNPQNSHSRPFAYFICKGPHMARECLNR

Query:  IAFNAFQAALTSDSDDK
         AFNAFQA+L SDSD++
Subjt:  IAFNAFQAALTSDSDDK

KAA0064695.1 reverse transcriptase [Cucumis melo var. makuwa]3.0e-5442.17Show/hide
Query:  EISDTVRFLEGRIEEVSEKADAIDAVTGRLDRLPIKELLTKVDTLEAKAT---RINYERGGSSTGSIAHVEERIGELDSSQKSIVEMINDMSEDFRAALD
        E+ D++R+LE R++E+SEK + ID V G ++  PI+EL+ +VD LE        +NYERG SSTGS+AH+EER+ ELDSS K+++EMIN MSEDFRA LD
Subjt:  EISDTVRFLEGRIEEVSEKADAIDAVTGRLDRLPIKELLTKVDTLEAKAT---RINYERGGSSTGSIAHVEERIGELDSSQKSIVEMINDMSEDFRAALD

Query:  IVRNEIAD--------------------------------------------------------------------------------------------
        +VRNEIAD                                                                                            
Subjt:  IVRNEIAD--------------------------------------------------------------------------------------------

Query:  -----------------RVQELSSAYAAAERLFDLSSDSQDARRLPSYSFGGNKNNRASFPKAGGGDRGSNGDHRPFQSNTGNTGRGQNPQNSHSRPFAY
                         RVQ+L+SAYAAAERLFDLS+DSQD RR  S S GG++NNR S PK  GGD   NGD R  QSNTGN+ RG +  N  +RP + 
Subjt:  -----------------RVQELSSAYAAAERLFDLSSDSQDARRLPSYSFGGNKNNRASFPKAGGGDRGSNGDHRPFQSNTGNTGRGQNPQNSHSRPFAY

Query:  FICKGPHMARECLNRIAFNAFQAALTSDSDDK
        FICKGPHMARECLN+ AFNAFQA+L SDSD++
Subjt:  FICKGPHMARECLNRIAFNAFQAALTSDSDDK

TYK07954.1 reverse transcriptase [Cucumis melo var. makuwa]3.0e-5439.62Show/hide
Query:  EISDTVRFLEGRIEEVSEKADAIDAVTGRLDRLPIKELLTKVDTLEAK---ATRINYERGGSSTGSIAHVEERIGELDSSQKSIVEMINDMSEDFRAALD
        E+ D++R+LE R++E+SEK + IDAV GR++  PI+EL+T+VD LE        +NYERG SSTGS+AH+EER+ ELDSSQK+++EM+N MSEDFRA LD
Subjt:  EISDTVRFLEGRIEEVSEKADAIDAVTGRLDRLPIKELLTKVDTLEAK---ATRINYERGGSSTGSIAHVEERIGELDSSQKSIVEMINDMSEDFRAALD

Query:  IVRNEIAD--------------------------------------------------------------------------------------------
        +VRNEIAD                                                                                            
Subjt:  IVRNEIAD--------------------------------------------------------------------------------------------

Query:  ---------------------------------------------------RVQELSSAYAAAERLFDLSSDSQDARRLPSYSFGGNKNNRASFPKAGGG
                                                           RVQ+L+SAYAAAERLFDLS+DSQD RR PS S GG++NNR S PK  GG
Subjt:  ---------------------------------------------------RVQELSSAYAAAERLFDLSSDSQDARRLPSYSFGGNKNNRASFPKAGGG

Query:  DRGSNGDHRPFQSNTGNTGRGQNPQNSHSRPFAYFICKGPHMARECLNRIAFNAFQAALTSDSDDK
        DR  NGD R  QSNTGN+ RG + QN  +RP + FICKGPHMAREC N+ AFNAFQA+L SDSD++
Subjt:  DRGSNGDHRPFQSNTGNTGRGQNPQNSHSRPFAYFICKGPHMARECLNRIAFNAFQAALTSDSDDK

TYK22097.1 reverse transcriptase [Cucumis melo var. makuwa]7.5e-5844.79Show/hide
Query:  EISDTVRFLEGRIEEVSEKADAIDAVTGRLDRLPIKELLTKVDTLEAK---ATRINYERGGSSTGSIAHVEERIGELDSSQKSIVEMINDMSEDFRAALD
        E+ D++R+LE  ++E+SEK + IDAV GR++  PI+EL+T+VD LE        +NYERG SST S+AH+EER+ ELDSSQK+++EMIN MSEDFRA L+
Subjt:  EISDTVRFLEGRIEEVSEKADAIDAVTGRLDRLPIKELLTKVDTLEAK---ATRINYERGGSSTGSIAHVEERIGELDSSQKSIVEMINDMSEDFRAALD

Query:  IVRNEIAD--------------------------------------------------------------------------------------------
        +VRNEIAD                                                                                            
Subjt:  IVRNEIAD--------------------------------------------------------------------------------------------

Query:  --RVQELSSAYAAAERLFDLSSDSQDARRLPSYSFGGNKNNRASFPKAGGGDRGSNGDHRPFQSNTGNTGRGQNPQNSHSRPFAYFICKGPHMARECLNR
          RVQ+L+SAYAAAERLFDLS+D QD RR PS S GG++NNR S PK  GGDR  NGD R  QSNTGN+ RG + QN  +RP + FICKGPHMAREC N+
Subjt:  --RVQELSSAYAAAERLFDLSSDSQDARRLPSYSFGGNKNNRASFPKAGGGDRGSNGDHRPFQSNTGNTGRGQNPQNSHSRPFAYFICKGPHMARECLNR

Query:  IAFNAFQAALTSDSDDK
         AFNAFQA+L SDSD++
Subjt:  IAFNAFQAALTSDSDDK

TrEMBL top hitse value%identityAlignment
A0A5A7SQC7 Reverse transcriptase9.9e-5640.11Show/hide
Query:  EISDTVRFLEGRIEEVSEKADAIDAVTGRLDRLPIKELLTKVDTLEAKAT---RINYERGGSSTGSIAHVEERIGELDSSQKSIVEMINDMSEDFRAALD
        E+ D++R+LE R+EE+SEK + IDAV GR++  PI+EL+T+VD LE        +NYERG SSTGS+AH+EER+ ELDSSQK+++EMIN MSEDFRA LD
Subjt:  EISDTVRFLEGRIEEVSEKADAIDAVTGRLDRLPIKELLTKVDTLEAKAT---RINYERGGSSTGSIAHVEERIGELDSSQKSIVEMINDMSEDFRAALD

Query:  IVRNEIAD--------------------------------------------------------------------------------------------
        +VRNEIAD                                                                                            
Subjt:  IVRNEIAD--------------------------------------------------------------------------------------------

Query:  ------------------------------------------------------RVQELSSAYAAAERLFDLSSDSQDARRLPSYSFGGNKNNRASFPKA
                                                              RVQ+L+SAYAAAERLFDLS+DSQD RR PS S GG++NNR S PK 
Subjt:  ------------------------------------------------------RVQELSSAYAAAERLFDLSSDSQDARRLPSYSFGGNKNNRASFPKA

Query:  GGGDRGSNGDHRPFQSNTGNTGRGQNPQNSHSRPFAYFICKGPHMARECLNRIAFNAFQAALTSDSDDK
         GGDR  NGD R  QSNTGN+ RG + QN  +RP + FICKGPHMAREC N+ AFNAFQA+LTSDSD++
Subjt:  GGGDRGSNGDHRPFQSNTGNTGRGQNPQNSHSRPFAYFICKGPHMARECLNRIAFNAFQAALTSDSDDK

A0A5A7UYM0 Reverse transcriptase3.7e-5844.79Show/hide
Query:  EISDTVRFLEGRIEEVSEKADAIDAVTGRLDRLPIKELLTKVDTLEAK---ATRINYERGGSSTGSIAHVEERIGELDSSQKSIVEMINDMSEDFRAALD
        E+ D++R+LE  ++E+SEK + IDAV GR++  PI+EL+T+VD LE        +NYERG SST S+AH+EER+ ELDSSQK+++EMIN MSEDFRA L+
Subjt:  EISDTVRFLEGRIEEVSEKADAIDAVTGRLDRLPIKELLTKVDTLEAK---ATRINYERGGSSTGSIAHVEERIGELDSSQKSIVEMINDMSEDFRAALD

Query:  IVRNEIAD--------------------------------------------------------------------------------------------
        +VRNEIAD                                                                                            
Subjt:  IVRNEIAD--------------------------------------------------------------------------------------------

Query:  --RVQELSSAYAAAERLFDLSSDSQDARRLPSYSFGGNKNNRASFPKAGGGDRGSNGDHRPFQSNTGNTGRGQNPQNSHSRPFAYFICKGPHMARECLNR
          RVQ+L+SAYAAAERLFDLS+D QD RR PS S GG++NNR S PK  GGDR  NGD R  QSNTGN+ RG + QN  +RP + FICKGPHMAREC N+
Subjt:  --RVQELSSAYAAAERLFDLSSDSQDARRLPSYSFGGNKNNRASFPKAGGGDRGSNGDHRPFQSNTGNTGRGQNPQNSHSRPFAYFICKGPHMARECLNR

Query:  IAFNAFQAALTSDSDDK
         AFNAFQA+L SDSD++
Subjt:  IAFNAFQAALTSDSDDK

A0A5D3C9P8 Reverse transcriptase1.4e-5439.62Show/hide
Query:  EISDTVRFLEGRIEEVSEKADAIDAVTGRLDRLPIKELLTKVDTLEAK---ATRINYERGGSSTGSIAHVEERIGELDSSQKSIVEMINDMSEDFRAALD
        E+ D++R+LE R++E+SEK + IDAV GR++  PI+EL+T+VD LE        +NYERG SSTGS+AH+EER+ ELDSSQK+++EM+N MSEDFRA LD
Subjt:  EISDTVRFLEGRIEEVSEKADAIDAVTGRLDRLPIKELLTKVDTLEAK---ATRINYERGGSSTGSIAHVEERIGELDSSQKSIVEMINDMSEDFRAALD

Query:  IVRNEIAD--------------------------------------------------------------------------------------------
        +VRNEIAD                                                                                            
Subjt:  IVRNEIAD--------------------------------------------------------------------------------------------

Query:  ---------------------------------------------------RVQELSSAYAAAERLFDLSSDSQDARRLPSYSFGGNKNNRASFPKAGGG
                                                           RVQ+L+SAYAAAERLFDLS+DSQD RR PS S GG++NNR S PK  GG
Subjt:  ---------------------------------------------------RVQELSSAYAAAERLFDLSSDSQDARRLPSYSFGGNKNNRASFPKAGGG

Query:  DRGSNGDHRPFQSNTGNTGRGQNPQNSHSRPFAYFICKGPHMARECLNRIAFNAFQAALTSDSDDK
        DR  NGD R  QSNTGN+ RG + QN  +RP + FICKGPHMAREC N+ AFNAFQA+L SDSD++
Subjt:  DRGSNGDHRPFQSNTGNTGRGQNPQNSHSRPFAYFICKGPHMARECLNRIAFNAFQAALTSDSDDK

A0A5D3D8M3 Reverse transcriptase1.4e-5442.17Show/hide
Query:  EISDTVRFLEGRIEEVSEKADAIDAVTGRLDRLPIKELLTKVDTLEAKAT---RINYERGGSSTGSIAHVEERIGELDSSQKSIVEMINDMSEDFRAALD
        E+ D++R+LE R++E+SEK + ID V G ++  PI+EL+ +VD LE        +NYERG SSTGS+AH+EER+ ELDSS K+++EMIN MSEDFRA LD
Subjt:  EISDTVRFLEGRIEEVSEKADAIDAVTGRLDRLPIKELLTKVDTLEAKAT---RINYERGGSSTGSIAHVEERIGELDSSQKSIVEMINDMSEDFRAALD

Query:  IVRNEIAD--------------------------------------------------------------------------------------------
        +VRNEIAD                                                                                            
Subjt:  IVRNEIAD--------------------------------------------------------------------------------------------

Query:  -----------------RVQELSSAYAAAERLFDLSSDSQDARRLPSYSFGGNKNNRASFPKAGGGDRGSNGDHRPFQSNTGNTGRGQNPQNSHSRPFAY
                         RVQ+L+SAYAAAERLFDLS+DSQD RR  S S GG++NNR S PK  GGD   NGD R  QSNTGN+ RG +  N  +RP + 
Subjt:  -----------------RVQELSSAYAAAERLFDLSSDSQDARRLPSYSFGGNKNNRASFPKAGGGDRGSNGDHRPFQSNTGNTGRGQNPQNSHSRPFAY

Query:  FICKGPHMARECLNRIAFNAFQAALTSDSDDK
        FICKGPHMARECLN+ AFNAFQA+L SDSD++
Subjt:  FICKGPHMARECLNRIAFNAFQAALTSDSDDK

A0A5D3DEJ3 Reverse transcriptase3.7e-5844.79Show/hide
Query:  EISDTVRFLEGRIEEVSEKADAIDAVTGRLDRLPIKELLTKVDTLEAK---ATRINYERGGSSTGSIAHVEERIGELDSSQKSIVEMINDMSEDFRAALD
        E+ D++R+LE  ++E+SEK + IDAV GR++  PI+EL+T+VD LE        +NYERG SST S+AH+EER+ ELDSSQK+++EMIN MSEDFRA L+
Subjt:  EISDTVRFLEGRIEEVSEKADAIDAVTGRLDRLPIKELLTKVDTLEAK---ATRINYERGGSSTGSIAHVEERIGELDSSQKSIVEMINDMSEDFRAALD

Query:  IVRNEIAD--------------------------------------------------------------------------------------------
        +VRNEIAD                                                                                            
Subjt:  IVRNEIAD--------------------------------------------------------------------------------------------

Query:  --RVQELSSAYAAAERLFDLSSDSQDARRLPSYSFGGNKNNRASFPKAGGGDRGSNGDHRPFQSNTGNTGRGQNPQNSHSRPFAYFICKGPHMARECLNR
          RVQ+L+SAYAAAERLFDLS+D QD RR PS S GG++NNR S PK  GGDR  NGD R  QSNTGN+ RG + QN  +RP + FICKGPHMAREC N+
Subjt:  --RVQELSSAYAAAERLFDLSSDSQDARRLPSYSFGGNKNNRASFPKAGGGDRGSNGDHRPFQSNTGNTGRGQNPQNSHSRPFAYFICKGPHMARECLNR

Query:  IAFNAFQAALTSDSDDK
         AFNAFQA+L SDSD++
Subjt:  IAFNAFQAALTSDSDDK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGAGGCTACATCATTCCGCGAGTTTGTCCACATGTCTGCAGCGAAACAGATAGGCAAGGCCCACGCAGACCGATTGGTAGAGATCGAAAAGCAGATGCTCTACC
TGCTGAAATTTCGGATACCGTCCGCTTCTTGGAAGGTCGGATTGAGGAAGTGTCCGAGAAAGCTGATGCTATTGACGCGGTGACCGGTCGCCTCGACAGATTACCTATAA
AGGAGTTGTTAACAAAAGTTGACACTTTAGAGGCAAAGGCTACAAGAATAAACTACGAACGTGGGGGCAGTTCAACGGGCTCTATTGCCCACGTAGAGGAACGGATTGGC
GAGCTAGATAGCTCCCAAAAGTCGATTGTCGAGATGATAAATGACATGTCAGAGGATTTCCGTGCCGCCCTTGACATCGTTAGGAATGAGATCGCAGACAGGGTCCAAGA
ACTCTCATCGGCATACGCAGCGGCAGAACGACTATTTGACCTGTCCAGTGACTCTCAAGATGCGAGACGTCTTCCAAGTTACTCGTTTGGAGGAAATAAGAACAATCGTG
CAAGTTTCCCAAAGGCCGGAGGGGGAGATAGAGGATCTAATGGTGATCATAGGCCCTTCCAATCAAACACCGGGAACACGGGGCGAGGACAGAACCCCCAAAACTCTCAC
AGTCGTCCCTTTGCCTATTTCATATGTAAGGGGCCGCACATGGCGAGAGAATGTTTGAATCGAATCGCCTTCAACGCCTTTCAGGCTGCCTTAACCTCAGACTCGGATGA
CAAGAATGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGAGGCTACATCATTCCGCGAGTTTGTCCACATGTCTGCAGCGAAACAGATAGGCAAGGCCCACGCAGACCGATTGGTAGAGATCGAAAAGCAGATGCTCTACC
TGCTGAAATTTCGGATACCGTCCGCTTCTTGGAAGGTCGGATTGAGGAAGTGTCCGAGAAAGCTGATGCTATTGACGCGGTGACCGGTCGCCTCGACAGATTACCTATAA
AGGAGTTGTTAACAAAAGTTGACACTTTAGAGGCAAAGGCTACAAGAATAAACTACGAACGTGGGGGCAGTTCAACGGGCTCTATTGCCCACGTAGAGGAACGGATTGGC
GAGCTAGATAGCTCCCAAAAGTCGATTGTCGAGATGATAAATGACATGTCAGAGGATTTCCGTGCCGCCCTTGACATCGTTAGGAATGAGATCGCAGACAGGGTCCAAGA
ACTCTCATCGGCATACGCAGCGGCAGAACGACTATTTGACCTGTCCAGTGACTCTCAAGATGCGAGACGTCTTCCAAGTTACTCGTTTGGAGGAAATAAGAACAATCGTG
CAAGTTTCCCAAAGGCCGGAGGGGGAGATAGAGGATCTAATGGTGATCATAGGCCCTTCCAATCAAACACCGGGAACACGGGGCGAGGACAGAACCCCCAAAACTCTCAC
AGTCGTCCCTTTGCCTATTTCATATGTAAGGGGCCGCACATGGCGAGAGAATGTTTGAATCGAATCGCCTTCAACGCCTTTCAGGCTGCCTTAACCTCAGACTCGGATGA
CAAGAATGGTTAA
Protein sequenceShow/hide protein sequence
MKGGYIIPRVCPHVCSETDRQGPRRPIGRDRKADALPAEISDTVRFLEGRIEEVSEKADAIDAVTGRLDRLPIKELLTKVDTLEAKATRINYERGGSSTGSIAHVEERIG
ELDSSQKSIVEMINDMSEDFRAALDIVRNEIADRVQELSSAYAAAERLFDLSSDSQDARRLPSYSFGGNKNNRASFPKAGGGDRGSNGDHRPFQSNTGNTGRGQNPQNSH
SRPFAYFICKGPHMARECLNRIAFNAFQAALTSDSDDKNG