; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0002567 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002567
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 297 family
Genome locationchr11:15652352..15653019
RNA-Seq ExpressionPI0002567
SyntenyPI0002567
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042324.1 Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa]4.3e-5266.3Show/hide
Query:  LKSLETLEKHDKFNEHIDQATLEYVNNEFAREKPSHDDLSTFLDFVTSINDEHALVDNVTTLE-----------QHALANNFFDD-EQILKTIGIDNVHN
        L+SL+ LE+HDKFNE IDQATLE+V NEFA+ KPS DDLS FLDFVTS+NDE+ LVDN+ T E           +H    N  DD E ILK+I I+N H+
Subjt:  LKSLETLEKHDKFNEHIDQATLEYVNNEFAREKPSHDDLSTFLDFVTSINDEHALVDNVTTLE-----------QHALANNFFDD-EQILKTIGIDNVHN

Query:  INTHIENLEKEN----DSCEAYLHKECENSNSNELTLPLQENGIELKVLPSHLKYVFLREKNTYPVIISKELTEEQEARLL
         + HI+N EKEN    D CE  LHKECE+SN+NELT PLQENGI+LKVLPSHLKYVFL EKNTY VIISKELT+EQEARLL
Subjt:  INTHIENLEKEN----DSCEAYLHKECENSNSNELTLPLQENGIELKVLPSHLKYVFLREKNTYPVIISKELTEEQEARLL

KAA0062405.1 Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa]9.9e-3354.55Show/hide
Query:  LKSLETLEKHDKFNEHIDQATLEYVNNEFAREKPSHDDLSTFLDFVTSINDEHALVDNVTTLEQHALANNFFDDEQILKTIGIDNVHNINTHIENLEKEN
        L+SLETLE+HDKFNE IDQATLEYV NEF++ KPS DDLS FLDFV S+ND H LVDN+ T EQH L                                 
Subjt:  LKSLETLEKHDKFNEHIDQATLEYVNNEFAREKPSHDDLSTFLDFVTSINDEHALVDNVTTLEQHALANNFFDDEQILKTIGIDNVHNINTHIENLEKEN

Query:  DSCEAYLHKECENSNSNELTLPLQENGIELKVLPSHLKYVFLREKNTYPVIISKELTEEQEARLL
           +  LH                +NGIELKVLPSHLKYVFL EKNTYPVIISKELTEEQE RLL
Subjt:  DSCEAYLHKECENSNSNELTLPLQENGIELKVLPSHLKYVFLREKNTYPVIISKELTEEQEARLL

KAA0065429.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]1.4e-3160.56Show/hide
Query:  EYVNNEFAREKPSHDDLSTFLDFVTSINDEHALVDNVTTLEQHALANNFF-------------DDEQILKTIGIDNVHNINTHIENLEKENDSCEAYLHK
        ++V+NEFA+EKP+ DDLS FL+FVTSINDEHALVDNVTT EQHAL NNF              DDEQILK+I IDN H+INTHI+N EKEND      + 
Subjt:  EYVNNEFAREKPSHDDLSTFLDFVTSINDEHALVDNVTTLEQHALANNFF-------------DDEQILKTIGIDNVHNINTHIENLEKENDSCEAYLHK

Query:  ECENSNSNELTLPLQENGIELKVLPSHLKYVFLREKNTYPVI
         CE            EN IELKVLP HLKYVFL EKNTY V+
Subjt:  ECENSNSNELTLPLQENGIELKVLPSHLKYVFLREKNTYPVI

KAA0066992.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]5.4e-3152.69Show/hide
Query:  LKSLETLEKHDKFNEHIDQATLEYVNNEFAREKPSHDDLSTFLDFVTSINDEHALVDNVTTLEQHALANNFFDDEQILKTIGIDNVHNINTHIENLEKEN
        L+SLE LE+HD FNE IDQATLEYV NEFA+ KPS DDLS FL FV S+NDEH  VDN+ T EQHAL N+F             N H++  +I++     
Subjt:  LKSLETLEKHDKFNEHIDQATLEYVNNEFAREKPSHDDLSTFLDFVTSINDEHALVDNVTTLEQHALANNFFDDEQILKTIGIDNVHNINTHIENLEKEN

Query:  DSCEAYLHKECENSNSNELTLPLQENG---IELKVLPSHLKYVFLREKNTYPVIISKELTEEQEARL
                                +NG    +LKVLPSHLKY FLREKNTYPVII KELT+EQEARL
Subjt:  DSCEAYLHKECENSNSNELTLPLQENG---IELKVLPSHLKYVFLREKNTYPVIISKELTEEQEARL

KAE8647060.1 hypothetical protein Csa_022980 [Cucumis sativus]1.7e-5668.98Show/hide
Query:  LKSLETLEKHDKFNEHIDQATLEYVNNEFAREKPSHDDLSTFLDFVTSINDEHALVDNVTTLEQHALANNFF-------------DDEQILKTIGIDNVH
        L+SLETLE+ DK NE IDQATLEYV+NEF++EKPS DDLS FL+FV SINDEHALVDNVTT +QHAL NNF              +DEQ LK I IDN  
Subjt:  LKSLETLEKHDKFNEHIDQATLEYVNNEFAREKPSHDDLSTFLDFVTSINDEHALVDNVTTLEQHALANNFF-------------DDEQILKTIGIDNVH

Query:  NINTHIENLEK-----ENDSCEAYLHKECE----NSNSNELTLPLQENGIELKVLPSHLKYVFLREKNTYPVIISKELTEEQEARLL
        + + HI  L+K     END CE YLHKECE    NSNSNELTLPLQ+NGIE+KV PSHLKYVFL EKNTYP IISKELTEEQEARLL
Subjt:  NINTHIENLEK-----ENDSCEAYLHKECE----NSNSNELTLPLQENGIELKVLPSHLKYVFLREKNTYPVIISKELTEEQEARLL

TrEMBL top hitse value%identityAlignment
A0A5A7V4I7 Uncharacterized protein9.0e-2455.65Show/hide
Query:  KSLETLEKHDKFNEHIDQATLEYVNNEFAREKPSHDDLSTFLDFVTSINDEHALVDNVTTLEQHALANNFF-------------DDEQILKTIGIDNVHN
        +SLETLEKHD+F+E IDQATLEYV NEFA+ KPS DD+S FLDF  S+NDEH LVDN+ T EQH L N+F              DDE ILK+IGI+N H+
Subjt:  KSLETLEKHDKFNEHIDQATLEYVNNEFAREKPSHDDLSTFLDFVTSINDEHALVDNVTTLEQHALANNFF-------------DDEQILKTIGIDNVHN

Query:  INTHIENLEKENDSC
         + HI+       +C
Subjt:  INTHIENLEKENDSC

A0A5A7VIZ2 Retrovirus-related Pol polyprotein from transposon 17.66.9e-3260.56Show/hide
Query:  EYVNNEFAREKPSHDDLSTFLDFVTSINDEHALVDNVTTLEQHALANNFF-------------DDEQILKTIGIDNVHNINTHIENLEKENDSCEAYLHK
        ++V+NEFA+EKP+ DDLS FL+FVTSINDEHALVDNVTT EQHAL NNF              DDEQILK+I IDN H+INTHI+N EKEND      + 
Subjt:  EYVNNEFAREKPSHDDLSTFLDFVTSINDEHALVDNVTTLEQHALANNFF-------------DDEQILKTIGIDNVHNINTHIENLEKENDSCEAYLHK

Query:  ECENSNSNELTLPLQENGIELKVLPSHLKYVFLREKNTYPVI
         CE            EN IELKVLP HLKYVFL EKNTY V+
Subjt:  ECENSNSNELTLPLQENGIELKVLPSHLKYVFLREKNTYPVI

A0A5D3BDS0 Transposon Ty3-I Gag-Pol polyprotein2.6e-3152.69Show/hide
Query:  LKSLETLEKHDKFNEHIDQATLEYVNNEFAREKPSHDDLSTFLDFVTSINDEHALVDNVTTLEQHALANNFFDDEQILKTIGIDNVHNINTHIENLEKEN
        L+SLE LE+HD FNE IDQATLEYV NEFA+ KPS DDLS FL FV S+NDEH  VDN+ T EQHAL N+F             N H++  +I++     
Subjt:  LKSLETLEKHDKFNEHIDQATLEYVNNEFAREKPSHDDLSTFLDFVTSINDEHALVDNVTTLEQHALANNFFDDEQILKTIGIDNVHNINTHIENLEKEN

Query:  DSCEAYLHKECENSNSNELTLPLQENG---IELKVLPSHLKYVFLREKNTYPVIISKELTEEQEARL
                                +NG    +LKVLPSHLKY FLREKNTYPVII KELT+EQEARL
Subjt:  DSCEAYLHKECENSNSNELTLPLQENG---IELKVLPSHLKYVFLREKNTYPVIISKELTEEQEARL

A0A5D3CW21 Retrovirus-related Pol polyprotein from transposon 297 family2.1e-5266.3Show/hide
Query:  LKSLETLEKHDKFNEHIDQATLEYVNNEFAREKPSHDDLSTFLDFVTSINDEHALVDNVTTLE-----------QHALANNFFDD-EQILKTIGIDNVHN
        L+SL+ LE+HDKFNE IDQATLE+V NEFA+ KPS DDLS FLDFVTS+NDE+ LVDN+ T E           +H    N  DD E ILK+I I+N H+
Subjt:  LKSLETLEKHDKFNEHIDQATLEYVNNEFAREKPSHDDLSTFLDFVTSINDEHALVDNVTTLE-----------QHALANNFFDD-EQILKTIGIDNVHN

Query:  INTHIENLEKEN----DSCEAYLHKECENSNSNELTLPLQENGIELKVLPSHLKYVFLREKNTYPVIISKELTEEQEARLL
         + HI+N EKEN    D CE  LHKECE+SN+NELT PLQENGI+LKVLPSHLKYVFL EKNTY VIISKELT+EQEARLL
Subjt:  INTHIENLEKEN----DSCEAYLHKECENSNSNELTLPLQENGIELKVLPSHLKYVFLREKNTYPVIISKELTEEQEARLL

A0A5D3DS97 Retrovirus-related Pol polyprotein from transposon 297 family4.8e-3354.55Show/hide
Query:  LKSLETLEKHDKFNEHIDQATLEYVNNEFAREKPSHDDLSTFLDFVTSINDEHALVDNVTTLEQHALANNFFDDEQILKTIGIDNVHNINTHIENLEKEN
        L+SLETLE+HDKFNE IDQATLEYV NEF++ KPS DDLS FLDFV S+ND H LVDN+ T EQH L                                 
Subjt:  LKSLETLEKHDKFNEHIDQATLEYVNNEFAREKPSHDDLSTFLDFVTSINDEHALVDNVTTLEQHALANNFFDDEQILKTIGIDNVHNINTHIENLEKEN

Query:  DSCEAYLHKECENSNSNELTLPLQENGIELKVLPSHLKYVFLREKNTYPVIISKELTEEQEARLL
           +  LH                +NGIELKVLPSHLKYVFL EKNTYPVIISKELTEEQE RLL
Subjt:  DSCEAYLHKECENSNSNELTLPLQENGIELKVLPSHLKYVFLREKNTYPVIISKELTEEQEARLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGATAAAGGTCTTCTTAGTGTTGAAATCATTAGAGACTTTAGAAAAGCATGATAAATTCAATGAGCATATAGATCAAGCAACTCTAGAATATGTTAATAATGAATT
TGCTAGGGAGAAACCTAGTCATGATGATCTTTCTACCTTCCTTGACTTTGTTACTAGTATAAATGATGAGCATGCTTTGGTTGATAATGTTACAACACTTGAACAACATG
CTCTAGCTAATAATTTTTTTGATGATGAGCAAATTTTGAAAACCATAGGCATTGACAATGTTCATAACATAAACACCCACATAGAAAACCTTGAAAAAGAGAATGATTCT
TGTGAGGCTTATTTGCATAAAGAATGTGAGAATTCTAATTCTAATGAACTTACTTTACCTTTGCAGGAAAATGGGATAGAGCTTAAGGTTCTTCCTTCTCATCTCAAATA
TGTGTTCTTGAGAGAAAAGAACACATATCCTGTCATAATTTCGAAGGAACTTACCGAAGAACAAGAAGCAAGGTTGCTTGTGTTGGGTTTTATGTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGATAAAGGTCTTCTTAGTGTTGAAATCATTAGAGACTTTAGAAAAGCATGATAAATTCAATGAGCATATAGATCAAGCAACTCTAGAATATGTTAATAATGAATT
TGCTAGGGAGAAACCTAGTCATGATGATCTTTCTACCTTCCTTGACTTTGTTACTAGTATAAATGATGAGCATGCTTTGGTTGATAATGTTACAACACTTGAACAACATG
CTCTAGCTAATAATTTTTTTGATGATGAGCAAATTTTGAAAACCATAGGCATTGACAATGTTCATAACATAAACACCCACATAGAAAACCTTGAAAAAGAGAATGATTCT
TGTGAGGCTTATTTGCATAAAGAATGTGAGAATTCTAATTCTAATGAACTTACTTTACCTTTGCAGGAAAATGGGATAGAGCTTAAGGTTCTTCCTTCTCATCTCAAATA
TGTGTTCTTGAGAGAAAAGAACACATATCCTGTCATAATTTCGAAGGAACTTACCGAAGAACAAGAAGCAAGGTTGCTTGTGTTGGGTTTTATGTCCTAA
Protein sequenceShow/hide protein sequence
MLIKVFLVLKSLETLEKHDKFNEHIDQATLEYVNNEFAREKPSHDDLSTFLDFVTSINDEHALVDNVTTLEQHALANNFFDDEQILKTIGIDNVHNINTHIENLEKENDS
CEAYLHKECENSNSNELTLPLQENGIELKVLPSHLKYVFLREKNTYPVIISKELTEEQEARLLVLGFMS