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PI0002574 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002574
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr09:14567800..14568390
RNA-Seq ExpressionPI0002574
SyntenyPI0002574
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025369.1 uncharacterized protein E6C27_scaffold1204G00530 [Cucumis melo var. makuwa]3.0e-7574.02Show/hide
Query:  MTWSSNQELHFFENLNRELRRIRR----EETIHNI-RPDPLENLEPNLE---QPNLDRENMGQVREKTLKELSEPDEDQRPLCIVIPPTTQPFELKLRLI
        MT SSN +  +FE+LNRE+RRIRR    E +IHN+   +PL  LEP+L+    PNL R N+G+VREKTL+EL+EPDEDQRPLCIVIP TTQPFELK  LI
Subjt:  MTWSSNQELHFFENLNRELRRIRR----EETIHNI-RPDPLENLEPNLE---QPNLDRENMGQVREKTLKELSEPDEDQRPLCIVIPPTTQPFELKLRLI

Query:  HLLPMYKGSSGEDPHKHLKDFHMVCDFMRPHGVSEEQLNLRAFPFSLTDTVKRWLYYLEPGSIITWGSLKKKFLEKFFPASRANNIRKEIYEIRQAFGES
        HLL ++KGS GED HKHLKDFHMVC  MRPH +SEEQLNLRAFPF LTD  KRWLYYLEP  I TW SLKKKFLEKFFPASRANNIRKEIY IRQAFGES
Subjt:  HLLPMYKGSSGEDPHKHLKDFHMVCDFMRPHGVSEEQLNLRAFPFSLTDTVKRWLYYLEPGSIITWGSLKKKFLEKFFPASRANNIRKEIYEIRQAFGES

Query:  LSEY
        LSEY
Subjt:  LSEY

KAA0031967.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.5e-7875Show/hide
Query:  MTWSSNQELHFFENLNRELRRIRREETIHNIRP-----DPLENLEPNLE---QPNLDRENMGQVREKTLKELSEPDEDQRPLCIVIPPTTQPFELKLRLI
        MT SSN E  +FE+LN+E+RRIRRE    N  P     +PL  LEP+L+    PNL R NMG+VREKT+++L E DEDQRPLCIVI  TTQPFELK RLI
Subjt:  MTWSSNQELHFFENLNRELRRIRREETIHNIRP-----DPLENLEPNLE---QPNLDRENMGQVREKTLKELSEPDEDQRPLCIVIPPTTQPFELKLRLI

Query:  HLLPMYKGSSGEDPHKHLKDFHMVCDFMRPHGVSEEQLNLRAFPFSLTDTVKRWLYYLEPGSIITWGSLKKKFLEKFFPASRANNIRKEIYEIRQAFGES
        HLLP++KG+SGEDPHKHLKDFHMVCD MRPHG+SEEQLNLRAFPFSLTD  KRWLYYLEPGSI TWGSLKKKFLEKFFPASR NNIRKEIY IRQAFGES
Subjt:  HLLPMYKGSSGEDPHKHLKDFHMVCDFMRPHGVSEEQLNLRAFPFSLTDTVKRWLYYLEPGSIITWGSLKKKFLEKFFPASRANNIRKEIYEIRQAFGES

Query:  LSEY
        L +Y
Subjt:  LSEY

KAA0054379.1 uncharacterized protein E6C27_scaffold24G001140 [Cucumis melo var. makuwa]1.2e-6875.98Show/hide
Query:  IRREETIHNI-RPDPLENLEPNLEQP---NLDRENMGQVREKTLKELSEPDEDQRPLCIVIPPTTQPFELKLRLIHLLPMYKGSSGEDPHKHLKDFHMVC
        +R E  I N+   +PL  LEP+L+ P   NL R NMG+VRE TL+EL++PDEDQRPLCIVIPPTTQPFELK  LIH L ++KGSS ED HKHLKDFHMVC
Subjt:  IRREETIHNI-RPDPLENLEPNLEQP---NLDRENMGQVREKTLKELSEPDEDQRPLCIVIPPTTQPFELKLRLIHLLPMYKGSSGEDPHKHLKDFHMVC

Query:  DFMRPHGVSEEQLNLRAFPFSLTDTVKRWLYYLEPGSIITWGSLKKKFLEKFFPASRANNIRKEIYEIRQAFGESLSEY
        D MRPHG+SEEQLNLRAFPFSLTD  KRWLYYLE GSI TWGSLKKKFLEK FPASR NN RKEIY IRQAFGESLSEY
Subjt:  DFMRPHGVSEEQLNLRAFPFSLTDTVKRWLYYLEPGSIITWGSLKKKFLEKFFPASRANNIRKEIYEIRQAFGESLSEY

KAA0058150.1 uncharacterized protein E6C27_scaffold274G004630 [Cucumis melo var. makuwa]1.3e-6585.42Show/hide
Query:  MGQVREKTLKELSEPDEDQRPLCIVIPPTTQPFELKLRLIHLLPMYKGSSGEDPHKHLKDFHMVCDFMRPHGVSEEQLNLRAFPFSLTDTVKRWLYYLEP
        MG+VREK L+EL+EP+ED RPLCIVIPPTTQPFELK  LIHLLP++KGSSGEDPHKHLKDFHMVCD MRP+ +SEEQLNLRAFPF LTD  K WLYYLEP
Subjt:  MGQVREKTLKELSEPDEDQRPLCIVIPPTTQPFELKLRLIHLLPMYKGSSGEDPHKHLKDFHMVCDFMRPHGVSEEQLNLRAFPFSLTDTVKRWLYYLEP

Query:  GSIITWGSLKKKFLEKFFPASRANNIRKEIYEIRQAFGESLSEY
        GSI TWGSLKKKFLEKFFPASRANNIRKEIY IRQAFGESLS+Y
Subjt:  GSIITWGSLKKKFLEKFFPASRANNIRKEIYEIRQAFGESLSEY

KAA0058334.1 uncharacterized protein E6C27_scaffold409G00180 [Cucumis melo var. makuwa]1.0e-7573.04Show/hide
Query:  MTWSSNQELHFFENLNRELRRIRREETIHNIRP-----DPLENLEPNLE---QPNLDRENMGQVREKTLKELSEPDEDQRPLCIVIPPTTQPFELKLRLI
        MT SSN E  +FE+LNRE+R I+RE    N  P     +PL  LEP+L+    PNL R NM +VREKTL+EL+EP+EDQRPLC+VIPPTTQPFELK RLI
Subjt:  MTWSSNQELHFFENLNRELRRIRREETIHNIRP-----DPLENLEPNLE---QPNLDRENMGQVREKTLKELSEPDEDQRPLCIVIPPTTQPFELKLRLI

Query:  HLLPMYKGSSGEDPHKHLKDFHMVCDFMRPHGVSEEQLNLRAFPFSLTDTVKRWLYYLEPGSIITWGSLKKKFLEKFFPASRANNIRKEIYEIRQAFGES
        HLLP++KG+ GEDPHKHLK FHMVCD MRPH +S+EQLNLRAFPFSLTD  KRW YYLE GSI TWGSLKKKFLEKFF AS+ANNIRKEIY IRQAFGES
Subjt:  HLLPMYKGSSGEDPHKHLKDFHMVCDFMRPHGVSEEQLNLRAFPFSLTDTVKRWLYYLEPGSIITWGSLKKKFLEKFFPASRANNIRKEIYEIRQAFGES

Query:  LSEY
        LSEY
Subjt:  LSEY

TrEMBL top hitse value%identityAlignment
A0A5A7SRF5 Retrotransposon gag protein3.1e-7875Show/hide
Query:  MTWSSNQELHFFENLNRELRRIRREETIHNIRP-----DPLENLEPNLE---QPNLDRENMGQVREKTLKELSEPDEDQRPLCIVIPPTTQPFELKLRLI
        MT SSN E  +FE+LN+E+RRIRRE    N  P     +PL  LEP+L+    PNL R NMG+VREKT+++L E DEDQRPLCIVI  TTQPFELK RLI
Subjt:  MTWSSNQELHFFENLNRELRRIRREETIHNIRP-----DPLENLEPNLE---QPNLDRENMGQVREKTLKELSEPDEDQRPLCIVIPPTTQPFELKLRLI

Query:  HLLPMYKGSSGEDPHKHLKDFHMVCDFMRPHGVSEEQLNLRAFPFSLTDTVKRWLYYLEPGSIITWGSLKKKFLEKFFPASRANNIRKEIYEIRQAFGES
        HLLP++KG+SGEDPHKHLKDFHMVCD MRPHG+SEEQLNLRAFPFSLTD  KRWLYYLEPGSI TWGSLKKKFLEKFFPASR NNIRKEIY IRQAFGES
Subjt:  HLLPMYKGSSGEDPHKHLKDFHMVCDFMRPHGVSEEQLNLRAFPFSLTDTVKRWLYYLEPGSIITWGSLKKKFLEKFFPASRANNIRKEIYEIRQAFGES

Query:  LSEY
        L +Y
Subjt:  LSEY

A0A5A7ULP9 Retrotrans_gag domain-containing protein5.9e-6975.98Show/hide
Query:  IRREETIHNI-RPDPLENLEPNLEQP---NLDRENMGQVREKTLKELSEPDEDQRPLCIVIPPTTQPFELKLRLIHLLPMYKGSSGEDPHKHLKDFHMVC
        +R E  I N+   +PL  LEP+L+ P   NL R NMG+VRE TL+EL++PDEDQRPLCIVIPPTTQPFELK  LIH L ++KGSS ED HKHLKDFHMVC
Subjt:  IRREETIHNI-RPDPLENLEPNLEQP---NLDRENMGQVREKTLKELSEPDEDQRPLCIVIPPTTQPFELKLRLIHLLPMYKGSSGEDPHKHLKDFHMVC

Query:  DFMRPHGVSEEQLNLRAFPFSLTDTVKRWLYYLEPGSIITWGSLKKKFLEKFFPASRANNIRKEIYEIRQAFGESLSEY
        D MRPHG+SEEQLNLRAFPFSLTD  KRWLYYLE GSI TWGSLKKKFLEK FPASR NN RKEIY IRQAFGESLSEY
Subjt:  DFMRPHGVSEEQLNLRAFPFSLTDTVKRWLYYLEPGSIITWGSLKKKFLEKFFPASRANNIRKEIYEIRQAFGESLSEY

A0A5A7USL5 Retrotrans_gag domain-containing protein6.1e-6685.42Show/hide
Query:  MGQVREKTLKELSEPDEDQRPLCIVIPPTTQPFELKLRLIHLLPMYKGSSGEDPHKHLKDFHMVCDFMRPHGVSEEQLNLRAFPFSLTDTVKRWLYYLEP
        MG+VREK L+EL+EP+ED RPLCIVIPPTTQPFELK  LIHLLP++KGSSGEDPHKHLKDFHMVCD MRP+ +SEEQLNLRAFPF LTD  K WLYYLEP
Subjt:  MGQVREKTLKELSEPDEDQRPLCIVIPPTTQPFELKLRLIHLLPMYKGSSGEDPHKHLKDFHMVCDFMRPHGVSEEQLNLRAFPFSLTDTVKRWLYYLEP

Query:  GSIITWGSLKKKFLEKFFPASRANNIRKEIYEIRQAFGESLSEY
        GSI TWGSLKKKFLEKFFPASRANNIRKEIY IRQAFGESLS+Y
Subjt:  GSIITWGSLKKKFLEKFFPASRANNIRKEIYEIRQAFGESLSEY

A0A5A7UT28 Retrotrans_gag domain-containing protein5.0e-7673.04Show/hide
Query:  MTWSSNQELHFFENLNRELRRIRREETIHNIRP-----DPLENLEPNLE---QPNLDRENMGQVREKTLKELSEPDEDQRPLCIVIPPTTQPFELKLRLI
        MT SSN E  +FE+LNRE+R I+RE    N  P     +PL  LEP+L+    PNL R NM +VREKTL+EL+EP+EDQRPLC+VIPPTTQPFELK RLI
Subjt:  MTWSSNQELHFFENLNRELRRIRREETIHNIRP-----DPLENLEPNLE---QPNLDRENMGQVREKTLKELSEPDEDQRPLCIVIPPTTQPFELKLRLI

Query:  HLLPMYKGSSGEDPHKHLKDFHMVCDFMRPHGVSEEQLNLRAFPFSLTDTVKRWLYYLEPGSIITWGSLKKKFLEKFFPASRANNIRKEIYEIRQAFGES
        HLLP++KG+ GEDPHKHLK FHMVCD MRPH +S+EQLNLRAFPFSLTD  KRW YYLE GSI TWGSLKKKFLEKFF AS+ANNIRKEIY IRQAFGES
Subjt:  HLLPMYKGSSGEDPHKHLKDFHMVCDFMRPHGVSEEQLNLRAFPFSLTDTVKRWLYYLEPGSIITWGSLKKKFLEKFFPASRANNIRKEIYEIRQAFGES

Query:  LSEY
        LSEY
Subjt:  LSEY

A0A5D3DIP6 Retrotrans_gag domain-containing protein1.5e-7574.02Show/hide
Query:  MTWSSNQELHFFENLNRELRRIRR----EETIHNI-RPDPLENLEPNLE---QPNLDRENMGQVREKTLKELSEPDEDQRPLCIVIPPTTQPFELKLRLI
        MT SSN +  +FE+LNRE+RRIRR    E +IHN+   +PL  LEP+L+    PNL R N+G+VREKTL+EL+EPDEDQRPLCIVIP TTQPFELK  LI
Subjt:  MTWSSNQELHFFENLNRELRRIRR----EETIHNI-RPDPLENLEPNLE---QPNLDRENMGQVREKTLKELSEPDEDQRPLCIVIPPTTQPFELKLRLI

Query:  HLLPMYKGSSGEDPHKHLKDFHMVCDFMRPHGVSEEQLNLRAFPFSLTDTVKRWLYYLEPGSIITWGSLKKKFLEKFFPASRANNIRKEIYEIRQAFGES
        HLL ++KGS GED HKHLKDFHMVC  MRPH +SEEQLNLRAFPF LTD  KRWLYYLEP  I TW SLKKKFLEKFFPASRANNIRKEIY IRQAFGES
Subjt:  HLLPMYKGSSGEDPHKHLKDFHMVCDFMRPHGVSEEQLNLRAFPFSLTDTVKRWLYYLEPGSIITWGSLKKKFLEKFFPASRANNIRKEIYEIRQAFGES

Query:  LSEY
        LSEY
Subjt:  LSEY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCTGGTCTTCCAACCAAGAACTTCACTTTTTCGAAAACCTAAATAGGGAATTACGTAGGATTAGGAGAGAAGAAACCATTCATAATATCCGTCCAGATCCTTTAGA
AAACCTAGAGCCTAATCTAGAACAACCAAACCTTGATAGAGAGAACATGGGGCAAGTTAGAGAGAAAACCCTAAAAGAGCTTTCCGAGCCTGATGAGGACCAAAGGCCCC
TCTGCATTGTAATTCCCCCAACCACACAACCTTTTGAACTTAAACTCAGACTAATCCATCTCTTACCAATGTATAAGGGTAGTTCAGGAGAGGACCCCCATAAACATCTT
AAGGACTTTCACATGGTTTGTGACTTTATGAGACCGCACGGAGTCTCAGAGGAGCAACTTAACTTGAGAGCCTTCCCCTTTTCTTTAACTGACACAGTCAAAAGATGGCT
TTACTATCTAGAGCCAGGGTCCATCATAACTTGGGGTAGCCTTAAGAAAAAATTCCTAGAAAAATTCTTTCCTGCTTCGAGAGCTAATAACATTAGGAAAGAGATATACG
AAATTAGGCAAGCTTTTGGGGAGTCTTTGTCTGAATACTAG
mRNA sequenceShow/hide mRNA sequence
ATGACCTGGTCTTCCAACCAAGAACTTCACTTTTTCGAAAACCTAAATAGGGAATTACGTAGGATTAGGAGAGAAGAAACCATTCATAATATCCGTCCAGATCCTTTAGA
AAACCTAGAGCCTAATCTAGAACAACCAAACCTTGATAGAGAGAACATGGGGCAAGTTAGAGAGAAAACCCTAAAAGAGCTTTCCGAGCCTGATGAGGACCAAAGGCCCC
TCTGCATTGTAATTCCCCCAACCACACAACCTTTTGAACTTAAACTCAGACTAATCCATCTCTTACCAATGTATAAGGGTAGTTCAGGAGAGGACCCCCATAAACATCTT
AAGGACTTTCACATGGTTTGTGACTTTATGAGACCGCACGGAGTCTCAGAGGAGCAACTTAACTTGAGAGCCTTCCCCTTTTCTTTAACTGACACAGTCAAAAGATGGCT
TTACTATCTAGAGCCAGGGTCCATCATAACTTGGGGTAGCCTTAAGAAAAAATTCCTAGAAAAATTCTTTCCTGCTTCGAGAGCTAATAACATTAGGAAAGAGATATACG
AAATTAGGCAAGCTTTTGGGGAGTCTTTGTCTGAATACTAG
Protein sequenceShow/hide protein sequence
MTWSSNQELHFFENLNRELRRIRREETIHNIRPDPLENLEPNLEQPNLDRENMGQVREKTLKELSEPDEDQRPLCIVIPPTTQPFELKLRLIHLLPMYKGSSGEDPHKHL
KDFHMVCDFMRPHGVSEEQLNLRAFPFSLTDTVKRWLYYLEPGSIITWGSLKKKFLEKFFPASRANNIRKEIYEIRQAFGESLSEY