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PI0002593 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002593
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr02:15080258..15080713
RNA-Seq ExpressionPI0002593
SyntenyPI0002593
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040193.1 gag/pol protein [Cucumis melo var. makuwa]2.0e-5574.17Show/hide
Query:  MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHDRWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQE
        M SSIIALLK ++LTG NY  WKS LNMILVI DLR +LME+CPPFP +NASQ+V+DA+D WTK N+KA++YIL SM D+LSKKHE MVTARQIMDS++E
Subjt:  MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHDRWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEVVIDE
        MFGQPSIQI+ EAIKYVYN  MKE QSVREHVLDM+V FN+AE N VV DE
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEVVIDE

KAA0063887.1 gag/pol protein [Cucumis melo var. makuwa]4.7e-6078.81Show/hide
Query:  MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHDRWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQE
        M SSIIALLK ++LTG+NYA WKS LNMILVI DLRFVLMEECPPFP +NASQ+V+DA+D WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+E
Subjt:  MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHDRWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEVVIDE
        MFGQPSIQI+ EAIKYVYNARMKEGQSVREHVL M+V FNVAE N+ + DE
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEVVIDE

TYK00843.1 gag/pol protein [Cucumis melo var. makuwa]4.8e-5778.15Show/hide
Query:  MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHDRWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQE
        M SSIIALLK E LTG+NYAMWKS LNMILVI DLRF+LMEECPPFP +NAS+++RDA++R TKAN+KA +YILASMSD+LSKKHE MVTARQIMDS +E
Subjt:  MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHDRWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEVVIDE
        +F QPSIQI+ EAIKYVYNA MKEGQSVREH LDM+V FNVAE N  VIDE
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEVVIDE

TYK15919.1 gag/pol protein [Cucumis melo var. makuwa]4.7e-6078.81Show/hide
Query:  MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHDRWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQE
        M SSIIALLK ++LTG+NYA WKS LNMILVI DLRFVLMEECPPFP +NASQ+V+DA+D WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+E
Subjt:  MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHDRWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEVVIDE
        MFGQPSIQI+ EAIKYVYNARMKEGQSVREHVL M+V FNVAE N+ + DE
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEVVIDE

XP_022158791.1 uncharacterized protein LOC111025258 [Momordica charantia]1.7e-5473.51Show/hide
Query:  MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHDRWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQE
        M +S I LL ++KL GDNY +WKSNLN ILVIDDLRFVL EECPP    N++QTVRDAHDRW KANEKA+VYILAS+SDVLSKKHE + TAR+IMDSLQ 
Subjt:  MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHDRWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEVVIDE
        +FGQPS  I H+AIKYVYN RMKEG SVREHVL+MMV FNVAE N+ V++E
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEVVIDE

TrEMBL top hitse value%identityAlignment
A0A5A7VA67 Gag/pol protein2.3e-6078.81Show/hide
Query:  MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHDRWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQE
        M SSIIALLK ++LTG+NYA WKS LNMILVI DLRFVLMEECPPFP +NASQ+V+DA+D WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+E
Subjt:  MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHDRWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEVVIDE
        MFGQPSIQI+ EAIKYVYNARMKEGQSVREHVL M+V FNVAE N+ + DE
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEVVIDE

A0A5D3BM47 Gag/pol protein2.3e-5778.15Show/hide
Query:  MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHDRWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQE
        M SSIIALLK E LTG+NYAMWKS LNMILVI DLRF+LMEECPPFP +NAS+++RDA++R TKAN+KA +YILASMSD+LSKKHE MVTARQIMDS +E
Subjt:  MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHDRWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEVVIDE
        +F QPSIQI+ EAIKYVYNA MKEGQSVREH LDM+V FNVAE N  VIDE
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEVVIDE

A0A5D3D0D9 Gag/pol protein2.3e-6078.81Show/hide
Query:  MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHDRWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQE
        M SSIIALLK ++LTG+NYA WKS LNMILVI DLRFVLMEECPPFP +NASQ+V+DA+D WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+E
Subjt:  MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHDRWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEVVIDE
        MFGQPSIQI+ EAIKYVYNARMKEGQSVREHVL M+V FNVAE N+ + DE
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEVVIDE

A0A5D3DQJ2 Gag/pol protein9.8e-5674.17Show/hide
Query:  MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHDRWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQE
        M SSIIALLK ++LTG NY  WKS LNMILVI DLR +LME+CPPFP +NASQ+V+DA+D WTK N+KA++YIL SM D+LSKKHE MVTARQIMDS++E
Subjt:  MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHDRWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEVVIDE
        MFGQPSIQI+ EAIKYVYN  MKE QSVREHVLDM+V FN+AE N VV DE
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEVVIDE

A0A6J1E205 uncharacterized protein LOC1110252588.3e-5573.51Show/hide
Query:  MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHDRWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQE
        M +S I LL ++KL GDNY +WKSNLN ILVIDDLRFVL EECPP    N++QTVRDAHDRW KANEKA+VYILAS+SDVLSKKHE + TAR+IMDSLQ 
Subjt:  MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHDRWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEVVIDE
        +FGQPS  I H+AIKYVYN RMKEG SVREHVL+MMV FNVAE N+ V++E
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEVVIDE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACTGGTGATAATTATGCGATGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTGCGCTT
CGTCTTAATGGAGGAATGTCCTCCTTTCCCTATTCGAAATGCATCCCAGACCGTCAGGGATGCACATGACCGCTGGACAAAGGCCAATGAAAAGGCCCAAGTCTACATCT
TGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAAATGTTTGGACAACCGTCCATTCAAATCCGA
CATGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGTCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGAGGT
GGTCATTGACGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACTGGTGATAATTATGCGATGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTGCGCTT
CGTCTTAATGGAGGAATGTCCTCCTTTCCCTATTCGAAATGCATCCCAGACCGTCAGGGATGCACATGACCGCTGGACAAAGGCCAATGAAAAGGCCCAAGTCTACATCT
TGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAAATGTTTGGACAACCGTCCATTCAAATCCGA
CATGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGTCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGAGGT
GGTCATTGACGAGTAA
Protein sequenceShow/hide protein sequence
MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHDRWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIR
HEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEVVIDE