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PI0002605 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002605
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr04:23502789..23504052
RNA-Seq ExpressionPI0002605
SyntenyPI0002605
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]1.7e-1769.23Show/hide
Query:  MKQQISHLTSAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSS-EEKVTSNPILLDNNDEKKEEKAETNALPSYS
        MKQQ++ LT+AISK++GKGKLPAQPDYANVSAISLRSGKIL+TP++ E+KVTS  + L++ +E KEEK ETN  PS S
Subjt:  MKQQISHLTSAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSS-EEKVTSNPILLDNNDEKKEEKAETNALPSYS
KAA0041664.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.7e-1766.67Show/hide
Query:  MKQQISHLTSAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSS-EEKVTSNPILLDNNDEKKEEKAETNALPSYS
        MKQQ++  T+AISK++GKGKLPAQPDYANVS ISLRSGKI++TP++ E+KVTS P+ L++ +E KEEK E N LPS S
Subjt:  MKQQISHLTSAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSS-EEKVTSNPILLDNNDEKKEEKAETNALPSYS
KAA0046065.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.7e-1767.95Show/hide
Query:  MKQQISHLTSAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSS-EEKVTSNPILLDNNDEKKEEKAETNALPSYS
        MKQQ++ LT+AISK++GKGKLPAQP++ANVSAISLRSGKIL+TP++ E+KVTS P+ L++ +E KEEK ETN  PS S
Subjt:  MKQQISHLTSAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSS-EEKVTSNPILLDNNDEKKEEKAETNALPSYS
KAA0062400.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.4e-1869.23Show/hide
Query:  MKQQISHLTSAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSS-EEKVTSNPILLDNNDEKKEEKAETNALPSYS
        MKQQ++ LT+AISK++GKGKLPAQPD+ANVSAISLRSGKIL+TP++ E+KVTS P+ L++ +E KEEK ETN  PS S
Subjt:  MKQQISHLTSAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSS-EEKVTSNPILLDNNDEKKEEKAETNALPSYS
TYK26581.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.4e-1869.23Show/hide
Query:  MKQQISHLTSAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSS-EEKVTSNPILLDNNDEKKEEKAETNALPSYS
        MKQQ++ LT+AISK++GKGKLPAQPD+ANVSAISLRSGKIL+TP++ E+KVTS P+ L++ +E KEEK ETN  PS S
Subjt:  MKQQISHLTSAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSS-EEKVTSNPILLDNNDEKKEEKAETNALPSYS
TrEMBL top hitse value%identityAlignment
A0A5A7TE06 Retrotransposon gag protein8.1e-1866.67Show/hide
Query:  MKQQISHLTSAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSS-EEKVTSNPILLDNNDEKKEEKAETNALPSYS
        MKQQ++  T+AISK++GKGKLPAQPDYANVS ISLRSGKI++TP++ E+KVTS P+ L++ +E KEEK E N LPS S
Subjt:  MKQQISHLTSAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSS-EEKVTSNPILLDNNDEKKEEKAETNALPSYS
A0A5A7TXC8 Retrotransposon gag protein8.1e-1867.95Show/hide
Query:  MKQQISHLTSAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSS-EEKVTSNPILLDNNDEKKEEKAETNALPSYS
        MKQQ++ LT+AISK++GKGKLPAQP++ANVSAISLRSGKIL+TP++ E+KVTS P+ L++ +E KEEK ETN  PS S
Subjt:  MKQQISHLTSAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSS-EEKVTSNPILLDNNDEKKEEKAETNALPSYS
A0A5A7V594 Retrotransposon gag protein2.1e-1869.23Show/hide
Query:  MKQQISHLTSAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSS-EEKVTSNPILLDNNDEKKEEKAETNALPSYS
        MKQQ++ LT+AISK++GKGKLPAQPD+ANVSAISLRSGKIL+TP++ E+KVTS P+ L++ +E KEEK ETN  PS S
Subjt:  MKQQISHLTSAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSS-EEKVTSNPILLDNNDEKKEEKAETNALPSYS
A0A5D3DS57 Retrotransposon gag protein2.1e-1869.23Show/hide
Query:  MKQQISHLTSAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSS-EEKVTSNPILLDNNDEKKEEKAETNALPSYS
        MKQQ++ LT+AISK++GKGKLPAQPD+ANVSAISLRSGKIL+TP++ E+KVTS P+ L++ +E KEEK ETN  PS S
Subjt:  MKQQISHLTSAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSS-EEKVTSNPILLDNNDEKKEEKAETNALPSYS
E5GBZ4 Retrotransposon gag protein8.1e-1869.23Show/hide
Query:  MKQQISHLTSAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSS-EEKVTSNPILLDNNDEKKEEKAETNALPSYS
        MKQQ++ LT+AISK++GKGKLPAQPDYANVSAISLRSGKIL+TP++ E+KVTS  + L++ +E KEEK ETN  PS S
Subjt:  MKQQISHLTSAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSS-EEKVTSNPILLDNNDEKKEEKAETNALPSYS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCAACAAATTTCTCATCTCACAAGTGCGATAAGCAAGTTAGAAGGAAAAGGCAAACTTCCGGCCCAACCGGACTATGCAAATGTAAGTGCCATCTCACTTAGAAG
TGGTAAAATTCTTGAAACCCCTTCAAGTGAAGAAAAGGTAACTTCTAACCCTATCCTTCTTGATAACAATGATGAGAAAAAGGAAGAAAAAGCGGAAACAAATGCTTTAC
CATCCTATTCTAATAAAGCTTCTTTACTTGCTTCTACTAACCTTGTCAATCCAAAGCACAAGCAAGCAAAGACAAGAACAATAAAGATGAATGGAGGAACCAAACCCAAG
ATCATAGATCCGGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCAACAAATTTCTCATCTCACAAGTGCGATAAGCAAGTTAGAAGGAAAAGGCAAACTTCCGGCCCAACCGGACTATGCAAATGTAAGTGCCATCTCACTTAGAAG
TGGTAAAATTCTTGAAACCCCTTCAAGTGAAGAAAAGGTAACTTCTAACCCTATCCTTCTTGATAACAATGATGAGAAAAAGGAAGAAAAAGCGGAAACAAATGCTTTAC
CATCCTATTCTAATAAAGCTTCTTTACTTGCTTCTACTAACCTTGTCAATCCAAAGCACAAGCAAGCAAAGACAAGAACAATAAAGATGAATGGAGGAACCAAACCCAAG
ATCATAGATCCGGGTTAA
Protein sequenceShow/hide protein sequence
MKQQISHLTSAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKVTSNPILLDNNDEKKEEKAETNALPSYSNKASLLASTNLVNPKHKQAKTRTIKMNGGTKPK
IIDPG