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PI0002623 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0002623
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr04:22643022..22644315
RNA-Seq ExpressionPI0002623
SyntenyPI0002623
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN61375.1 hypothetical protein Csa_006401 [Cucumis sativus]1.6e-0875.61Show/hide
Query:  FMLFPLTLRDEAKMWANALEDGEVGTWDQLIEKFMKNFFHL
        F LFPLT+RDEAK+WAN+LE  EV TW+QLIEKFMK FF L
Subjt:  FMLFPLTLRDEAKMWANALEDGEVGTWDQLIEKFMKNFFHL

WP_217833228.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]4.7e-0848.57Show/hide
Query:  EQPEFELDSEIERIFQRILP----EELRFMLFPLTLRDEAKMWANALEDGEVGTWDQLIEKFMKNFFHLT
        E P   L S IE     ++P    +++R  LFP +LRDEA+ WA +LE GE+ TW+Q+IEKFMK +F LT
Subjt:  EQPEFELDSEIERIFQRILP----EELRFMLFPLTLRDEAKMWANALEDGEVGTWDQLIEKFMKNFFHLT

XP_038882281.1 uncharacterized protein LOC120073512 [Benincasa hispida]1.2e-0654.35Show/hide
Query:  ILPEELRFMLFPLTLRDEAKMWANALEDGEVGTWDQLIEKFMKNFF
        I PE +R  LFP +LRD+AK W ++LE GE+ TW++L+EKFM+ +F
Subjt:  ILPEELRFMLFPLTLRDEAKMWANALEDGEVGTWDQLIEKFMKNFF

XP_038889363.1 uncharacterized protein LOC120079279 [Benincasa hispida]6.8e-0758.7Show/hide
Query:  ILPEELRFMLFPLTLRDEAKMWANALEDGEVGTWDQLIEKFMKNFF
        + PE +R  LFP TLRDEA +WA++LE  E+ +WDQL+E FMK FF
Subjt:  ILPEELRFMLFPLTLRDEAKMWANALEDGEVGTWDQLIEKFMKNFF

XP_038896560.1 uncharacterized protein LOC120084813 [Benincasa hispida]8.0e-0860.87Show/hide
Query:  ILPEELRFMLFPLTLRDEAKMWANALEDGEVGTWDQLIEKFMKNFF
        + PEELR  LFP TLRDEA+ WA +LE  E+  WDQL+E+FM  FF
Subjt:  ILPEELRFMLFPLTLRDEAKMWANALEDGEVGTWDQLIEKFMKNFF

TrEMBL top hitse value%identityAlignment
A0A0A0LHG4 Retrotrans_gag domain-containing protein7.8e-0975.61Show/hide
Query:  FMLFPLTLRDEAKMWANALEDGEVGTWDQLIEKFMKNFFHL
        F LFPLT+RDEAK+WAN+LE  EV TW+QLIEKFMK FF L
Subjt:  FMLFPLTLRDEAKMWANALEDGEVGTWDQLIEKFMKNFFHL

A0A392QG70 Retrotrans_gag domain-containing protein (Fragment)6.9e-0534.23Show/hide
Query:  YKISCKSSLNIKYLDPERRAKVQFQLNRTFKPEECVTKFI-SDYEQPEFELDSEIERIFQRILP----EELRFMLFPLTLRDEAKMWANALEDGEVGTWD
        Y I   S +N   + PE  A  QFQ    F+  + V +F  ++ E P   L   ++      +P    E  R  LFP +LRD AK W N+LE   + TW+
Subjt:  YKISCKSSLNIKYLDPERRAKVQFQLNRTFKPEECVTKFI-SDYEQPEFELDSEIERIFQRILP----EELRFMLFPLTLRDEAKMWANALEDGEVGTWD

Query:  QLIEKFMKNFF
         L EKF+  +F
Subjt:  QLIEKFMKNFF

A0A5A7TRN6 Retrotrans_gag domain-containing protein6.9e-0552.17Show/hide
Query:  ILPEELRFMLFPLTLRDEAKMWANALEDGEVGTWDQLIEKFMKNFF
        I   ELR  LFP TL+D+ + W +A+E  E+  WDQLI+KFM+ FF
Subjt:  ILPEELRFMLFPLTLRDEAKMWANALEDGEVGTWDQLIEKFMKNFF

A0A5A7UYP0 Retrotrans_gag domain-containing protein2.1e-0675.68Show/hide
Query:  LFPLTLRDEAKMWANALEDGEVGTWDQLIEKFMKNFF
        LF LTLRDEAK W N+LE GEV TW+ LIEKFMK FF
Subjt:  LFPLTLRDEAKMWANALEDGEVGTWDQLIEKFMKNFF

A0A6J1AZQ8 uncharacterized protein LOC1104227876.9e-0543.14Show/hide
Query:  ILPEELRFMLFPLTLRDEAKMWANALEDGEVGTWDQLIEKFMKNFFHLTRM
        +  + +R  LFP +LRD+AK W N+L  G + TWD L +K++  FF LT++
Subjt:  ILPEELRFMLFPLTLRDEAKMWANALEDGEVGTWDQLIEKFMKNFFHLTRM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCGCCTTAATTAGGGGTGATGAAACATATTGTAAATATAAGATTAGTTGTAAATCATCCCTTAACATTAAGTATTTGGATCCCGAGAGGCGAGCAAAAGTTCAGTT
TCAGTTGAATCGCACGTTTAAACCCGAAGAATGTGTGACCAAGTTTATAAGTGACTATGAACAACCAGAATTTGAGCTTGACTCTGAGATTGAACGAATATTTCAACGCA
TCTTGCCTGAAGAATTAAGATTCATGCTTTTTCCGTTAACTCTGAGGGATGAGGCAAAGATGTGGGCGAACGCCTTGGAAGATGGCGAGGTGGGAACATGGGACCAATTA
ATTGAAAAATTCATGAAGAATTTTTTCCACCTCACGAGAATGCAAGAAGAAGGAAGGAGCTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCGCCTTAATTAGGGGTGATGAAACATATTGTAAATATAAGATTAGTTGTAAATCATCCCTTAACATTAAGTATTTGGATCCCGAGAGGCGAGCAAAAGTTCAGTT
TCAGTTGAATCGCACGTTTAAACCCGAAGAATGTGTGACCAAGTTTATAAGTGACTATGAACAACCAGAATTTGAGCTTGACTCTGAGATTGAACGAATATTTCAACGCA
TCTTGCCTGAAGAATTAAGATTCATGCTTTTTCCGTTAACTCTGAGGGATGAGGCAAAGATGTGGGCGAACGCCTTGGAAGATGGCGAGGTGGGAACATGGGACCAATTA
ATTGAAAAATTCATGAAGAATTTTTTCCACCTCACGAGAATGCAAGAAGAAGGAAGGAGCTCATGA
Protein sequenceShow/hide protein sequence
MLALIRGDETYCKYKISCKSSLNIKYLDPERRAKVQFQLNRTFKPEECVTKFISDYEQPEFELDSEIERIFQRILPEELRFMLFPLTLRDEAKMWANALEDGEVGTWDQL
IEKFMKNFFHLTRMQEEGRSS